Wall clock time and date at job start Tue Mar 31 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47445 * 270.00246 * 3 2 1 5 5 H 1.48497 * 109.47335 * 149.99778 * 3 2 1 6 6 H 1.48501 * 109.47216 * 30.00319 * 3 2 1 7 7 C 1.37876 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46823 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99594 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00483 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99531 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.70578 * 322.95759 * 13 11 10 15 15 C 1.53067 * 109.70537 * 202.33413 * 13 11 10 16 16 C 1.50981 * 110.43578 * 287.92673 * 15 13 11 17 17 O 1.21275 * 118.45605 * 163.15871 * 16 15 13 18 18 N 1.33534 * 123.26461 * 344.35250 * 16 15 13 19 19 C 1.45451 * 123.69839 * 1.36377 * 18 16 15 20 20 H 1.08998 * 108.20480 * 98.22896 * 19 18 16 21 21 C 1.52459 * 110.54340 * 216.55922 * 19 18 16 22 22 C 1.52976 * 109.97544 * 65.15969 * 21 19 18 23 23 C 1.53068 * 109.14744 * 59.60773 * 22 21 19 24 24 C 1.52913 * 109.22801 * 299.04225 * 23 22 21 25 25 C 1.52688 * 110.82838 * 339.74568 * 19 18 16 26 26 H 1.08998 * 109.93315 * 172.55570 * 25 19 18 27 27 H 0.97005 * 120.00109 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47202 * 299.99632 * 9 7 2 29 29 H 1.08994 * 109.47440 * 60.00231 * 9 7 2 30 30 H 0.96996 * 120.00432 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.35301 * 49.15683 * 15 13 11 32 32 H 1.09000 * 109.35914 * 168.74617 * 15 13 11 33 33 H 0.97001 * 118.14525 * 181.39254 * 18 16 15 34 34 H 1.09005 * 109.38626 * 185.31311 * 21 19 18 35 35 H 1.08995 * 109.38959 * 305.10450 * 21 19 18 36 36 H 1.09000 * 109.52217 * 179.50781 * 22 21 19 37 37 H 1.08996 * 109.52410 * 299.70445 * 22 21 19 38 38 H 1.09003 * 109.51170 * 58.96265 * 23 22 21 39 39 H 1.08997 * 109.51238 * 179.06475 * 23 22 21 40 40 H 1.09001 * 109.41935 * 300.54353 * 24 23 22 41 41 H 1.09006 * 109.41853 * 180.73792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5466 1.4402 0.7001 6 1 1.4466 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7332 -6.0287 -0.0022 14 1 3.5941 -5.7757 -0.6209 15 6 2.0552 -7.2872 -0.5493 16 6 1.0640 -7.8298 0.4521 17 8 0.2298 -8.6219 0.0685 18 7 1.0450 -7.4634 1.7361 19 6 1.9538 -6.4829 2.3091 20 1 1.4371 -5.5242 2.3526 21 6 2.3427 -6.8794 3.7289 22 6 3.1481 -8.1798 3.7063 23 6 4.4097 -7.9744 2.8641 24 6 4.0070 -7.6143 1.4335 25 6 3.1946 -6.3167 1.4348 26 1 3.8008 -5.4892 1.8035 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6240 -2.5567 -0.8902 30 1 3.1567 -3.4354 -0.0021 31 1 1.5484 -7.0471 -1.4840 32 1 2.8092 -8.0520 -0.7355 33 1 0.3883 -7.8747 2.3196 34 1 2.9460 -6.0878 4.1733 35 1 1.4410 -7.0243 4.3239 36 1 3.4296 -8.4516 4.7237 37 1 2.5440 -8.9749 3.2696 38 1 5.0038 -7.1656 3.2895 39 1 4.9966 -8.8928 2.8576 40 1 3.4038 -8.4192 1.0134 41 1 4.9032 -7.4802 0.8277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:55 Heat of formation + Delta-G solvation = -130.622796 kcal Electronic energy + Delta-G solvation = -23180.699986 eV Core-core repulsion = 19864.680025 eV Total energy + Delta-G solvation = -3316.019961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.53142 -40.14271 -39.03826 -36.47784 -35.20392 -34.87826 -34.36427 -30.89317 -30.27088 -29.11234 -26.40549 -24.63136 -23.81239 -23.35384 -22.05753 -21.18025 -19.80242 -18.99215 -18.01412 -17.75177 -17.22013 -16.96416 -16.62194 -16.33982 -15.70612 -15.57566 -15.20744 -15.07814 -14.77987 -14.43386 -14.35343 -14.12067 -13.95577 -13.35175 -13.25804 -13.16882 -13.07571 -12.64566 -12.55692 -12.42385 -11.98209 -11.88719 -11.52142 -11.41748 -11.20422 -10.99101 -10.77842 -10.75704 -10.67771 -10.02312 -9.96601 -8.79586 -6.55557 1.56465 1.58294 1.64821 1.66715 1.82233 2.28220 2.37646 2.58277 3.08629 3.40297 3.41411 3.49630 3.62216 3.94509 3.97338 4.10006 4.18263 4.32900 4.40765 4.44711 4.54557 4.59899 4.65362 4.69457 4.80340 4.86426 4.93849 4.95720 5.10398 5.18869 5.24129 5.31347 5.36785 5.43656 5.53370 5.54637 5.79109 6.08021 6.30568 6.35080 6.78373 7.18840 7.23716 7.41450 8.59441 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004599 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.104969 B = 6086.482556 C = 6582.698082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.034 4.034 3 Si 1.131 2.869 4 H -0.272 1.272 5 H -0.256 1.256 6 H -0.288 1.288 7 C -0.625 4.625 8 H 0.080 0.920 9 C 0.255 3.745 10 N -0.697 5.697 11 C 0.496 3.504 12 O -0.596 6.596 13 C -0.098 4.098 14 H 0.148 0.852 15 C -0.114 4.114 16 C 0.530 3.470 17 O -0.616 6.616 18 N -0.697 5.697 19 C 0.139 3.861 20 H 0.032 0.968 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.078 4.078 26 H 0.118 0.882 27 H 0.252 0.748 28 H -0.020 1.020 29 H -0.023 1.023 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.395 0.605 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.649 -14.942 6.909 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.232 4.232 3 Si 0.951 3.049 4 H -0.198 1.198 5 H -0.180 1.180 6 H -0.214 1.214 7 C -0.663 4.663 8 H 0.098 0.902 9 C 0.131 3.869 10 N -0.347 5.347 11 C 0.284 3.716 12 O -0.477 6.477 13 C -0.119 4.119 14 H 0.165 0.835 15 C -0.154 4.154 16 C 0.319 3.681 17 O -0.500 6.500 18 N -0.345 5.345 19 C 0.034 3.966 20 H 0.050 0.950 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.097 4.097 26 H 0.136 0.864 27 H 0.061 0.939 28 H -0.002 1.002 29 H -0.005 1.005 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.162 0.838 33 H 0.230 0.770 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.374 -13.732 6.580 21.638 hybrid contribution -1.035 -1.484 0.071 1.811 sum 14.338 -15.216 6.651 21.940 Atomic orbital electron populations 1.70888 1.08451 1.29839 1.47689 1.27643 0.96266 1.07282 0.92004 0.82775 0.74304 0.69961 0.77884 1.19779 1.18000 1.21384 1.22448 0.95673 0.91537 1.56631 0.90185 1.18618 0.89383 0.85846 0.93007 1.46016 1.10991 1.05018 1.72660 1.21423 0.89827 0.84961 0.75418 1.90701 1.19519 1.85394 1.52125 1.21669 0.98413 0.90987 1.00870 0.83462 1.21685 0.98492 0.97964 0.97212 1.20582 0.84623 0.79427 0.83502 1.90675 1.41316 1.39304 1.78691 1.45332 1.36519 1.43008 1.09669 1.20811 0.90386 0.90227 0.95170 0.95036 1.21744 1.01267 0.99945 0.93085 1.21527 0.96790 0.96039 1.01081 1.21533 0.96961 1.02729 0.94052 1.21693 1.00023 0.94391 0.98841 1.21554 0.95464 1.01895 0.90805 0.86392 0.93878 1.00209 1.00496 0.75247 0.89718 0.83805 0.77035 0.88829 0.91526 0.90303 0.93065 0.90318 0.90397 0.92554 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.65 21.45 0.29 -57.37 16 2 C -0.03 -1.87 5.46 84.66 0.46 -1.40 16 3 Si 1.13 46.87 29.90 68.60 2.05 48.92 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.63 -33.23 9.28 25.60 0.24 -32.99 16 8 H 0.08 3.83 7.60 -2.91 -0.02 3.80 16 9 C 0.26 13.53 4.74 85.63 0.41 13.94 16 10 N -0.70 -27.39 5.55 -466.79 -2.59 -29.98 16 11 C 0.50 18.37 5.53 87.66 0.48 18.85 16 12 O -0.60 -28.69 14.65 -3.03 -0.04 -28.74 16 13 C -0.10 -2.26 2.70 -11.30 -0.03 -2.29 16 14 H 0.15 2.21 8.14 -2.39 -0.02 2.20 16 15 C -0.11 -2.92 4.55 29.96 0.14 -2.79 16 16 C 0.53 17.47 5.62 87.94 0.49 17.96 16 17 O -0.62 -25.72 17.80 -3.01 -0.05 -25.77 16 18 N -0.70 -19.71 4.45 -447.32 -1.99 -21.70 16 19 C 0.14 3.29 2.35 44.91 0.11 3.40 16 20 H 0.03 1.01 6.94 -2.39 -0.02 1.00 16 21 C -0.12 -2.05 5.51 30.41 0.17 -1.88 16 22 C -0.12 -1.54 5.84 30.61 0.18 -1.36 16 23 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 24 C -0.11 -1.38 4.55 30.60 0.14 -1.24 16 25 C -0.08 -1.41 2.35 -10.65 -0.03 -1.44 16 26 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.25 16.28 7.22 -92.70 -0.67 15.61 16 28 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 29 H -0.02 -1.37 8.01 -2.39 -0.02 -1.39 16 30 H 0.41 12.91 8.32 -92.71 -0.77 12.14 16 31 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 32 H 0.14 2.48 6.81 -2.39 -0.02 2.46 16 33 H 0.39 10.88 8.67 -92.71 -0.80 10.08 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 0.82 7.84 -2.39 -0.02 0.80 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.85 5.40 -2.39 -0.01 0.84 16 41 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -81.14 319.79 0.18 -80.97 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.42 Total: 25.94 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 2.94 Total: 7.74 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.29 Total: -109.06 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.10 Total: -54.51 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.05 Total: 48.92 kcal Total: -81.14 0.18 -80.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.657 kcal (2) G-P(sol) polarization free energy of solvation -81.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds