Wall clock time and date at job start Tue Mar 31 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47372 * 299.99771 * 3 2 1 6 6 H 1.48502 * 109.47556 * 59.99880 * 3 2 1 7 7 C 1.37881 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46765 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99738 * 179.97438 * 11 10 9 14 14 H 1.08995 * 109.73787 * 60.61728 * 13 11 10 15 15 C 1.53066 * 109.71337 * 300.00123 * 13 11 10 16 16 C 1.50158 * 110.12850 * 191.67033 * 15 13 11 17 17 O 1.21279 * 118.26177 * 197.21578 * 16 15 13 18 18 N 1.33530 * 123.47259 * 17.20224 * 16 15 13 19 19 C 1.45462 * 123.69931 * 357.52740 * 18 16 15 20 20 H 1.09002 * 108.23754 * 262.38499 * 19 18 16 21 21 C 1.52480 * 111.02122 * 143.72801 * 19 18 16 22 22 C 1.52969 * 109.95058 * 294.67033 * 21 19 18 23 23 C 1.53074 * 109.13711 * 300.36362 * 22 21 19 24 24 C 1.52905 * 109.25471 * 60.93236 * 23 22 21 25 25 C 1.52698 * 110.79182 * 20.24659 * 19 18 16 26 26 H 1.09002 * 109.95269 * 187.99130 * 25 19 18 27 27 H 0.97003 * 119.99569 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47195 * 59.99505 * 9 7 2 29 29 H 1.09007 * 109.46850 * 299.99714 * 9 7 2 30 30 H 0.96996 * 120.00570 * 359.97438 * 10 9 7 31 31 H 1.08998 * 109.36103 * 311.87364 * 15 13 11 32 32 H 1.09002 * 109.35527 * 71.60323 * 15 13 11 33 33 H 0.97003 * 118.14836 * 177.51283 * 18 16 15 34 34 H 1.09002 * 109.39081 * 54.81836 * 21 19 18 35 35 H 1.08999 * 109.38855 * 174.52023 * 21 19 18 36 36 H 1.09004 * 109.52690 * 60.25849 * 22 21 19 37 37 H 1.08994 * 109.52751 * 180.46558 * 22 21 19 38 38 H 1.08994 * 109.51259 * 180.86607 * 23 22 21 39 39 H 1.09006 * 109.50690 * 300.95727 * 23 22 21 40 40 H 1.09002 * 109.41462 * 59.48668 * 24 23 22 41 41 H 1.08996 * 109.42165 * 179.36020 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7535 -4.8834 0.0025 12 8 0.5612 -5.1050 0.0017 13 6 2.7328 -6.0289 0.0032 14 1 3.3546 -5.9811 0.8971 15 6 3.6160 -5.9539 -1.2447 16 6 4.3941 -7.2282 -1.4045 17 8 5.3596 -7.2233 -2.1384 18 7 4.0793 -8.3663 -0.7812 19 6 2.9801 -8.4920 0.1632 20 1 3.3853 -8.4078 1.1716 21 6 2.3007 -9.8510 0.0340 22 6 1.6311 -9.9716 -1.3361 23 6 0.5910 -8.8585 -1.4861 24 6 1.2881 -7.5009 -1.3911 25 6 1.9703 -7.3625 -0.0270 26 1 1.2304 -7.3863 0.7732 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 3.1565 -3.4356 0.0021 31 1 2.9886 -5.8010 -2.1228 32 1 4.3099 -5.1190 -1.1466 33 1 4.6138 -9.1538 -0.9688 34 1 3.0451 -10.6396 0.1437 35 1 1.5477 -9.9548 0.8153 36 1 2.3833 -9.8752 -2.1190 37 1 1.1409 -10.9417 -1.4178 38 1 0.0991 -8.9481 -2.4545 39 1 -0.1506 -8.9439 -0.6918 40 1 2.0361 -7.4218 -2.1801 41 1 0.5515 -6.7063 -1.5090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:59 Heat of formation + Delta-G solvation = -101.890168 kcal Electronic energy + Delta-G solvation = -22797.806107 eV Core-core repulsion = 19483.032086 eV Total energy + Delta-G solvation = -3314.774020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35164 -38.83273 -37.95952 -34.33394 -34.30103 -33.71540 -32.33126 -29.98592 -29.36092 -27.43221 -25.30504 -23.15483 -22.90995 -21.94087 -20.82639 -19.66882 -18.35823 -17.29858 -16.80769 -16.26756 -15.85359 -15.80170 -15.45415 -14.98448 -14.66870 -14.35048 -14.20103 -13.64337 -13.53588 -13.23650 -12.92653 -12.70147 -12.40403 -12.08538 -11.97916 -11.90394 -11.52773 -11.28225 -11.12003 -10.96914 -10.92264 -10.55059 -10.40856 -10.31738 -10.26051 -10.05642 -9.40902 -9.13423 -8.95220 -8.76661 -7.93975 -6.19613 -4.26441 2.58129 3.15162 3.22299 3.24395 3.29950 3.32870 3.89038 4.29829 4.32184 4.42131 4.59773 4.67411 4.81211 4.94741 4.96859 5.09356 5.17095 5.20364 5.33359 5.35761 5.36339 5.54191 5.57321 5.68435 5.74549 5.81969 5.86891 6.01278 6.06074 6.14349 6.34195 6.43207 6.68542 7.22855 7.25491 7.36745 7.47049 7.62749 7.93496 8.13658 8.55954 8.73514 9.01866 9.40435 10.90553 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.004087 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.397816 B = 6848.753316 C = 7486.916209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.505 3.495 12 O -0.548 6.548 13 C -0.112 4.112 14 H 0.099 0.901 15 C -0.129 4.129 16 C 0.528 3.472 17 O -0.559 6.559 18 N -0.710 5.710 19 C 0.143 3.857 20 H 0.069 0.931 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.073 4.073 26 H 0.102 0.898 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.391 0.609 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -19.228 0.615 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.357 5.357 11 C 0.289 3.711 12 O -0.427 6.427 13 C -0.133 4.133 14 H 0.117 0.883 15 C -0.169 4.169 16 C 0.315 3.685 17 O -0.438 6.438 18 N -0.362 5.362 19 C 0.038 3.962 20 H 0.087 0.913 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.092 4.092 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.223 0.777 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.516 -18.998 0.290 19.530 hybrid contribution 1.022 0.777 0.053 1.285 sum 5.538 -18.221 0.343 19.047 Atomic orbital electron populations 1.69983 1.06111 1.27222 1.48971 1.24945 0.94904 0.99471 0.94641 0.86369 0.79892 0.82952 0.77766 1.19591 1.20774 1.20804 1.21267 0.93330 0.90443 1.53155 0.91822 1.19125 0.88277 0.81967 0.97770 1.46508 1.11206 1.06156 1.71840 1.20134 0.89126 0.84096 0.77717 1.90644 1.16547 1.84679 1.50846 1.21606 0.97158 0.95219 0.99365 0.88258 1.21691 0.99231 0.96042 0.99911 1.20082 0.84222 0.85331 0.78832 1.90757 1.28725 1.85578 1.38754 1.45513 1.33029 1.12220 1.45486 1.20764 0.87198 0.96002 0.92244 0.91282 1.21732 1.00194 0.95528 0.98906 1.21541 0.98574 0.98771 0.96846 1.21507 0.97698 0.94350 1.01910 1.21759 1.00351 0.98338 0.95528 1.21303 0.96357 0.90964 1.00602 0.87942 0.92494 0.95453 0.95485 0.77672 0.87318 0.87558 0.76809 0.91468 0.90049 0.91996 0.91982 0.92033 0.91642 0.92456 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.36 5.43 -5.19 -0.03 6.33 16 10 N -0.71 -14.01 5.46 -61.47 -0.34 -14.35 16 11 C 0.51 9.07 6.85 -10.98 -0.08 9.00 16 12 O -0.55 -11.75 14.25 5.56 0.08 -11.67 16 13 C -0.11 -1.43 2.40 -91.40 -0.22 -1.65 16 14 H 0.10 1.11 8.12 -51.93 -0.42 0.68 16 15 C -0.13 -1.63 4.52 -28.11 -0.13 -1.76 16 16 C 0.53 6.85 6.84 -11.80 -0.08 6.77 16 17 O -0.56 -9.36 17.79 5.56 0.10 -9.27 16 18 N -0.71 -7.01 4.66 -55.37 -0.26 -7.26 16 19 C 0.14 1.24 2.89 -68.91 -0.20 1.04 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.13 -0.88 5.54 -27.01 -0.15 -1.03 16 22 C -0.12 -0.96 5.84 -26.71 -0.16 -1.12 16 23 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 24 C -0.12 -1.49 4.31 -26.70 -0.12 -1.60 16 25 C -0.07 -0.82 1.80 -90.36 -0.16 -0.99 16 26 H 0.10 1.23 7.88 -51.93 -0.41 0.82 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.39 6.71 8.02 -40.82 -0.33 6.38 16 31 H 0.11 1.46 6.76 -51.93 -0.35 1.10 16 32 H 0.11 1.30 7.93 -51.93 -0.41 0.89 16 33 H 0.40 3.45 8.68 -40.82 -0.35 3.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 5.43 -51.93 -0.28 0.43 16 41 H 0.09 1.35 6.31 -51.93 -0.33 1.02 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -32.26 321.44 -7.95 -40.21 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.21 Total: 6.22 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.89 Total: 0.58 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.14 Total: -46.56 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.18 Total: -20.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.26 -7.95 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.677 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds