Wall clock time and date at job start Tue Mar 31 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47372 * 299.99771 * 3 2 1 6 6 H 1.48502 * 109.47556 * 59.99880 * 3 2 1 7 7 C 1.37881 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46765 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99738 * 179.97438 * 11 10 9 14 14 H 1.08995 * 109.73787 * 60.61728 * 13 11 10 15 15 C 1.53066 * 109.71337 * 300.00123 * 13 11 10 16 16 C 1.50158 * 110.12850 * 191.67033 * 15 13 11 17 17 O 1.21279 * 118.26177 * 197.21578 * 16 15 13 18 18 N 1.33530 * 123.47259 * 17.20224 * 16 15 13 19 19 C 1.45462 * 123.69931 * 357.52740 * 18 16 15 20 20 H 1.09002 * 108.23754 * 262.38499 * 19 18 16 21 21 C 1.52480 * 111.02122 * 143.72801 * 19 18 16 22 22 C 1.52969 * 109.95058 * 294.67033 * 21 19 18 23 23 C 1.53074 * 109.13711 * 300.36362 * 22 21 19 24 24 C 1.52905 * 109.25471 * 60.93236 * 23 22 21 25 25 C 1.52698 * 110.79182 * 20.24659 * 19 18 16 26 26 H 1.09002 * 109.95269 * 187.99130 * 25 19 18 27 27 H 0.97003 * 119.99569 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47195 * 59.99505 * 9 7 2 29 29 H 1.09007 * 109.46850 * 299.99714 * 9 7 2 30 30 H 0.96996 * 120.00570 * 359.97438 * 10 9 7 31 31 H 1.08998 * 109.36103 * 311.87364 * 15 13 11 32 32 H 1.09002 * 109.35527 * 71.60323 * 15 13 11 33 33 H 0.97003 * 118.14836 * 177.51283 * 18 16 15 34 34 H 1.09002 * 109.39081 * 54.81836 * 21 19 18 35 35 H 1.08999 * 109.38855 * 174.52023 * 21 19 18 36 36 H 1.09004 * 109.52690 * 60.25849 * 22 21 19 37 37 H 1.08994 * 109.52751 * 180.46558 * 22 21 19 38 38 H 1.08994 * 109.51259 * 180.86607 * 23 22 21 39 39 H 1.09006 * 109.50690 * 300.95727 * 23 22 21 40 40 H 1.09002 * 109.41462 * 59.48668 * 24 23 22 41 41 H 1.08996 * 109.42165 * 179.36020 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7535 -4.8834 0.0025 12 8 0.5612 -5.1050 0.0017 13 6 2.7328 -6.0289 0.0032 14 1 3.3546 -5.9811 0.8971 15 6 3.6160 -5.9539 -1.2447 16 6 4.3941 -7.2282 -1.4045 17 8 5.3596 -7.2233 -2.1384 18 7 4.0793 -8.3663 -0.7812 19 6 2.9801 -8.4920 0.1632 20 1 3.3853 -8.4078 1.1716 21 6 2.3007 -9.8510 0.0340 22 6 1.6311 -9.9716 -1.3361 23 6 0.5910 -8.8585 -1.4861 24 6 1.2881 -7.5009 -1.3911 25 6 1.9703 -7.3625 -0.0270 26 1 1.2304 -7.3863 0.7732 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 3.1565 -3.4356 0.0021 31 1 2.9886 -5.8010 -2.1228 32 1 4.3099 -5.1190 -1.1466 33 1 4.6138 -9.1538 -0.9688 34 1 3.0451 -10.6396 0.1437 35 1 1.5477 -9.9548 0.8153 36 1 2.3833 -9.8752 -2.1190 37 1 1.1409 -10.9417 -1.4178 38 1 0.0991 -8.9481 -2.4545 39 1 -0.1506 -8.9439 -0.6918 40 1 2.0361 -7.4218 -2.1801 41 1 0.5515 -6.7063 -1.5090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:58 Heat of formation + Delta-G solvation = -125.617314 kcal Electronic energy + Delta-G solvation = -22798.834993 eV Core-core repulsion = 19483.032086 eV Total energy + Delta-G solvation = -3315.802907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.37626 -40.27214 -38.98926 -36.15080 -35.33737 -34.73604 -34.24670 -30.83274 -30.36228 -29.27276 -26.58368 -24.68808 -23.72416 -23.29555 -21.73000 -21.15648 -19.31932 -18.89273 -17.99694 -17.44288 -17.29664 -16.89043 -16.68991 -16.40880 -16.05035 -15.89384 -15.05265 -14.90532 -14.71110 -14.46497 -14.19631 -13.98827 -13.67423 -13.50546 -13.25506 -13.01622 -12.79853 -12.76871 -12.51003 -12.29082 -12.20677 -11.92630 -11.46303 -11.43697 -11.30121 -11.22346 -11.13776 -10.80753 -10.40735 -9.97664 -9.79428 -8.29358 -6.45057 1.43435 1.43783 1.54901 1.57263 1.73263 2.28855 2.31202 2.54010 3.06053 3.37153 3.53150 3.60952 3.66412 3.94830 4.05822 4.08398 4.20873 4.34238 4.40653 4.47067 4.51106 4.64166 4.67530 4.80849 4.98030 5.01216 5.12367 5.15476 5.22784 5.24982 5.26522 5.34655 5.42641 5.51187 5.52311 5.69593 5.86120 5.87372 6.29822 6.66342 6.90554 7.18574 7.24155 7.48313 8.82801 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.004087 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.397816 B = 6848.753316 C = 7486.916209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.505 3.495 12 O -0.585 6.585 13 C -0.096 4.096 14 H 0.129 0.871 15 C -0.126 4.126 16 C 0.533 3.467 17 O -0.599 6.599 18 N -0.694 5.694 19 C 0.147 3.853 20 H 0.096 0.904 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.073 4.073 26 H 0.099 0.901 27 H 0.268 0.732 28 H -0.012 1.012 29 H -0.009 1.009 30 H 0.406 0.594 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.407 0.593 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -20.720 1.632 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.357 5.357 11 C 0.291 3.709 12 O -0.466 6.466 13 C -0.117 4.117 14 H 0.147 0.853 15 C -0.166 4.166 16 C 0.320 3.680 17 O -0.482 6.482 18 N -0.345 5.345 19 C 0.043 3.957 20 H 0.114 0.886 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.092 4.092 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.241 0.759 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.245 0.755 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.735 -20.551 1.329 21.667 hybrid contribution 0.224 1.185 -0.277 1.237 sum 6.960 -19.366 1.052 20.606 Atomic orbital electron populations 1.70135 1.08161 1.28423 1.50134 1.26001 0.95729 1.03717 0.93931 0.85168 0.79112 0.77638 0.77665 1.17811 1.20581 1.20402 1.21661 0.94267 0.90744 1.52633 0.90016 1.18531 0.88635 0.84220 0.94204 1.46254 1.11102 1.05712 1.72617 1.21047 0.89582 0.84496 0.75740 1.90633 1.18788 1.85220 1.51920 1.21567 0.96092 0.93360 1.00723 0.85303 1.21635 0.99049 0.96781 0.99179 1.19924 0.83540 0.85859 0.78627 1.90748 1.30465 1.86202 1.40743 1.45423 1.32928 1.11613 1.44545 1.20886 0.86103 0.95794 0.92950 0.88649 1.21760 1.00931 0.94804 0.98387 1.21516 0.97821 0.98489 0.97509 1.21502 0.98275 0.93806 1.01809 1.21670 0.99431 0.98532 0.96152 1.21330 0.96938 0.91191 0.99755 0.88296 0.92293 0.99407 0.99147 0.75864 0.88605 0.86941 0.75541 0.88881 0.88757 0.92701 0.90288 0.92464 0.91536 0.93008 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.32 5.46 84.65 0.46 0.79 16 3 Si 0.98 42.22 29.54 68.60 2.03 44.25 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.56 -29.83 9.28 25.60 0.24 -29.59 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.27 14.27 5.43 85.63 0.46 14.74 16 10 N -0.71 -28.55 5.46 -466.78 -2.55 -31.10 16 11 C 0.50 18.51 6.85 87.66 0.60 19.11 16 12 O -0.58 -26.30 14.25 -3.01 -0.04 -26.34 16 13 C -0.10 -2.35 2.40 -11.30 -0.03 -2.37 16 14 H 0.13 2.47 8.12 -2.39 -0.02 2.45 16 15 C -0.13 -3.10 4.52 29.70 0.13 -2.97 16 16 C 0.53 12.95 6.84 87.68 0.60 13.55 16 17 O -0.60 -19.41 17.79 -3.03 -0.05 -19.47 16 18 N -0.69 -11.63 4.66 -448.19 -2.09 -13.72 16 19 C 0.15 2.02 2.89 44.91 0.13 2.15 16 20 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 21 C -0.12 -1.19 5.54 30.41 0.17 -1.02 16 22 C -0.12 -1.54 5.84 30.61 0.18 -1.36 16 23 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 24 C -0.12 -2.94 4.31 30.61 0.13 -2.81 16 25 C -0.07 -1.54 1.80 -10.63 -0.02 -1.56 16 26 H 0.10 2.23 7.88 -2.39 -0.02 2.21 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 30 H 0.41 13.76 8.02 -92.71 -0.74 13.01 16 31 H 0.10 2.63 6.76 -2.39 -0.02 2.61 16 32 H 0.11 2.62 7.93 -2.39 -0.02 2.60 16 33 H 0.41 5.66 8.68 -92.71 -0.80 4.86 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.83 7.87 -2.38 -0.02 0.81 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.05 1.30 5.43 -2.39 -0.01 1.28 16 41 H 0.05 1.57 6.31 -2.39 -0.02 1.56 16 Total: -1.00 -73.47 321.44 0.33 -73.14 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.50 Total: 21.86 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 3.24 Total: 6.63 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.35 Total: -100.07 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.10 Total: -45.81 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -73.47 0.33 -73.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.477 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds