Wall clock time and date at job start Tue Mar 31 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47188 * 29.99697 * 3 2 1 6 6 H 1.48494 * 109.47327 * 149.99901 * 3 2 1 7 7 C 1.37878 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99340 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99776 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99912 * 179.97438 * 11 10 9 14 14 H 1.09001 * 109.71040 * 335.52253 * 13 11 10 15 15 C 1.53179 * 109.75190 * 214.90479 * 13 11 10 16 16 C 1.50081 * 110.47220 * 193.41962 * 15 13 11 17 17 O 1.21277 * 118.04780 * 196.32469 * 16 15 13 18 18 N 1.33634 * 123.90040 * 16.34400 * 16 15 13 19 19 C 1.45378 * 123.18492 * 356.21576 * 18 16 15 20 20 H 1.09000 * 108.05339 * 263.73216 * 19 18 16 21 21 C 1.52714 * 111.69269 * 144.15194 * 19 18 16 22 22 C 1.53202 * 108.88418 * 176.76031 * 21 19 18 23 23 C 1.52886 * 109.96032 * 59.32517 * 22 21 19 24 24 C 1.53191 * 109.96796 * 301.08178 * 23 22 21 25 25 C 1.52767 * 108.87996 * 59.41933 * 24 23 22 26 26 H 1.09002 * 109.43975 * 58.61234 * 25 24 23 27 27 H 0.97003 * 119.99839 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47255 * 60.00374 * 9 7 2 29 29 H 1.08996 * 109.47013 * 299.99730 * 9 7 2 30 30 H 0.96999 * 120.00428 * 359.97438 * 10 9 7 31 31 H 1.08999 * 109.30232 * 313.72980 * 15 13 11 32 32 H 1.09001 * 109.30364 * 73.31511 * 15 13 11 33 33 H 0.96998 * 118.40819 * 176.23229 * 18 16 15 34 34 H 1.09001 * 109.56334 * 56.94410 * 21 19 18 35 35 H 1.08992 * 109.56592 * 296.58537 * 21 19 18 36 36 H 1.09000 * 109.38859 * 179.47529 * 22 21 19 37 37 H 1.09001 * 109.39047 * 299.17258 * 22 21 19 38 38 H 1.09008 * 109.38773 * 61.22688 * 23 22 21 39 39 H 1.09000 * 109.39210 * 181.02517 * 23 22 21 40 40 H 1.09001 * 109.57163 * 179.23409 * 24 23 22 41 41 H 1.08994 * 109.57232 * 299.47655 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7538 -4.8834 0.0033 12 8 0.5614 -5.1050 0.0035 13 6 2.7331 -6.0288 0.0038 14 1 3.6818 -5.7015 -0.4216 15 6 2.1707 -7.1909 -0.8206 16 6 2.9607 -8.4423 -0.5707 17 8 2.8412 -9.3585 -1.3562 18 7 3.7877 -8.6072 0.4660 19 6 4.0756 -7.5568 1.4290 20 1 5.0020 -7.0675 1.1283 21 6 4.2512 -8.1165 2.8390 22 6 4.6307 -6.9713 3.7833 23 6 3.5365 -5.9036 3.7750 24 6 3.3430 -5.3639 2.3545 25 6 2.9518 -6.5198 1.4355 26 1 2.0363 -6.9825 1.8041 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6248 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0022 31 1 1.1305 -7.3599 -0.5424 32 1 2.2241 -6.9402 -1.8800 33 1 4.2168 -9.4693 0.5814 34 1 5.0423 -8.8664 2.8382 35 1 3.3170 -8.5691 3.1710 36 1 4.7491 -7.3604 4.7946 37 1 5.5711 -6.5284 3.4553 38 1 2.6017 -6.3407 4.1264 39 1 3.8241 -5.0855 4.4354 40 1 2.5525 -4.6133 2.3536 41 1 4.2726 -4.9154 2.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:01 Heat of formation + Delta-G solvation = -107.477785 kcal Electronic energy + Delta-G solvation = -22701.346928 eV Core-core repulsion = 19386.330610 eV Total energy + Delta-G solvation = -3315.016318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10572 -38.87231 -38.13192 -34.71843 -34.25692 -33.65803 -32.31136 -30.07880 -29.32389 -27.58234 -24.96824 -23.06751 -22.89003 -22.08730 -20.32288 -19.73563 -19.22052 -17.28865 -17.02363 -16.61857 -15.87669 -15.37033 -15.22270 -14.90881 -14.42531 -14.30772 -14.18833 -13.95935 -13.72503 -13.25522 -12.99624 -12.73915 -12.30775 -12.06475 -11.99067 -11.72733 -11.64969 -11.52784 -11.07527 -10.98781 -10.92465 -10.71704 -10.54611 -10.36623 -10.33063 -9.98105 -9.44499 -9.21602 -9.01715 -8.77904 -7.95260 -6.20598 -4.27806 2.58735 3.10578 3.21299 3.23665 3.27819 3.29623 3.86887 4.26462 4.30361 4.35902 4.53999 4.71354 4.79825 4.93507 4.97083 5.09846 5.15858 5.16242 5.17974 5.25652 5.34575 5.53642 5.60392 5.64359 5.76448 5.86455 5.88925 5.89947 6.01027 6.03697 6.20999 6.28127 6.68046 7.20802 7.24905 7.35410 7.46300 7.60873 7.92450 8.13340 8.54807 8.72247 9.01214 9.39025 10.89505 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.004510 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.550333 B = 6207.444229 C = 7083.011972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.508 3.492 12 O -0.552 6.552 13 C -0.108 4.108 14 H 0.093 0.907 15 C -0.121 4.121 16 C 0.527 3.473 17 O -0.560 6.560 18 N -0.717 5.717 19 C 0.144 3.856 20 H 0.073 0.927 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.084 4.084 26 H 0.087 0.913 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.390 0.610 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 -13.453 7.067 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.292 3.708 12 O -0.431 6.431 13 C -0.130 4.130 14 H 0.111 0.889 15 C -0.161 4.161 16 C 0.314 3.686 17 O -0.439 6.439 18 N -0.369 5.369 19 C 0.039 3.961 20 H 0.091 0.909 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.103 4.103 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.223 0.777 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.362 -13.694 6.614 18.402 hybrid contribution 1.062 0.813 0.079 1.339 sum 11.424 -12.881 6.693 18.473 Atomic orbital electron populations 1.69973 1.06116 1.27342 1.48789 1.24943 0.94888 0.99436 0.94661 0.86429 0.79614 0.82700 0.78253 1.20462 1.21012 1.19748 1.21203 0.93225 0.90415 1.53346 0.91911 1.19122 0.88297 0.81947 0.97789 1.46530 1.11127 1.06024 1.71821 1.20083 0.89051 0.84181 0.77516 1.90669 1.16718 1.84777 1.50967 1.21428 0.99868 0.95021 0.96655 0.88911 1.21549 1.01581 0.90471 1.02502 1.20257 0.78670 0.89648 0.79989 1.90744 1.65529 1.42538 1.45062 1.45583 1.47433 1.16543 1.27370 1.20895 0.98278 0.88049 0.88919 0.90894 1.21824 1.02456 0.98528 0.93621 1.21498 0.99122 0.95580 0.99092 1.21558 0.98957 0.98361 0.96948 1.21646 1.02914 0.96926 0.94109 1.21298 0.98946 0.96173 0.93899 0.89485 0.92420 0.95511 0.95481 0.77672 0.86461 0.87785 0.76720 0.91269 0.91034 0.91507 0.91574 0.91775 0.91319 0.89936 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -14.14 9.28 -34.44 -0.32 -14.46 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 10 N -0.71 -13.68 5.09 -61.47 -0.31 -13.99 16 11 C 0.51 9.25 5.57 -10.98 -0.06 9.19 16 12 O -0.55 -12.46 16.02 5.56 0.09 -12.37 16 13 C -0.11 -1.42 2.27 -91.71 -0.21 -1.62 16 14 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 15 C -0.12 -1.66 5.22 -28.09 -0.15 -1.81 16 16 C 0.53 7.15 7.71 -11.79 -0.09 7.06 16 17 O -0.56 -9.65 17.78 5.56 0.10 -9.55 16 18 N -0.72 -7.32 5.24 -55.20 -0.29 -7.61 16 19 C 0.14 1.25 2.71 -68.72 -0.19 1.07 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 21 C -0.13 -0.89 5.60 -26.77 -0.15 -1.04 16 22 C -0.11 -0.80 5.91 -26.69 -0.16 -0.95 16 23 C -0.12 -1.07 5.90 -26.69 -0.16 -1.23 16 24 C -0.12 -1.28 4.89 -26.75 -0.13 -1.41 16 25 C -0.08 -0.93 1.53 -90.82 -0.14 -1.07 16 26 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.39 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.12 1.77 7.38 -51.93 -0.38 1.39 16 32 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.40 3.51 8.71 -40.82 -0.36 3.15 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.16 6.87 -51.93 -0.36 0.80 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -32.44 328.68 -8.08 -40.52 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.46 Total: 5.88 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.87 Total: 1.62 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.13 Total: -46.34 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.19 Total: -21.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.44 -8.08 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.958 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds