Wall clock time and date at job start Tue Mar 31 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47188 * 29.99697 * 3 2 1 6 6 H 1.48494 * 109.47327 * 149.99901 * 3 2 1 7 7 C 1.37878 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99340 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99776 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99912 * 179.97438 * 11 10 9 14 14 H 1.09001 * 109.71040 * 335.52253 * 13 11 10 15 15 C 1.53179 * 109.75190 * 214.90479 * 13 11 10 16 16 C 1.50081 * 110.47220 * 193.41962 * 15 13 11 17 17 O 1.21277 * 118.04780 * 196.32469 * 16 15 13 18 18 N 1.33634 * 123.90040 * 16.34400 * 16 15 13 19 19 C 1.45378 * 123.18492 * 356.21576 * 18 16 15 20 20 H 1.09000 * 108.05339 * 263.73216 * 19 18 16 21 21 C 1.52714 * 111.69269 * 144.15194 * 19 18 16 22 22 C 1.53202 * 108.88418 * 176.76031 * 21 19 18 23 23 C 1.52886 * 109.96032 * 59.32517 * 22 21 19 24 24 C 1.53191 * 109.96796 * 301.08178 * 23 22 21 25 25 C 1.52767 * 108.87996 * 59.41933 * 24 23 22 26 26 H 1.09002 * 109.43975 * 58.61234 * 25 24 23 27 27 H 0.97003 * 119.99839 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47255 * 60.00374 * 9 7 2 29 29 H 1.08996 * 109.47013 * 299.99730 * 9 7 2 30 30 H 0.96999 * 120.00428 * 359.97438 * 10 9 7 31 31 H 1.08999 * 109.30232 * 313.72980 * 15 13 11 32 32 H 1.09001 * 109.30364 * 73.31511 * 15 13 11 33 33 H 0.96998 * 118.40819 * 176.23229 * 18 16 15 34 34 H 1.09001 * 109.56334 * 56.94410 * 21 19 18 35 35 H 1.08992 * 109.56592 * 296.58537 * 21 19 18 36 36 H 1.09000 * 109.38859 * 179.47529 * 22 21 19 37 37 H 1.09001 * 109.39047 * 299.17258 * 22 21 19 38 38 H 1.09008 * 109.38773 * 61.22688 * 23 22 21 39 39 H 1.09000 * 109.39210 * 181.02517 * 23 22 21 40 40 H 1.09001 * 109.57163 * 179.23409 * 24 23 22 41 41 H 1.08994 * 109.57232 * 299.47655 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7538 -4.8834 0.0033 12 8 0.5614 -5.1050 0.0035 13 6 2.7331 -6.0288 0.0038 14 1 3.6818 -5.7015 -0.4216 15 6 2.1707 -7.1909 -0.8206 16 6 2.9607 -8.4423 -0.5707 17 8 2.8412 -9.3585 -1.3562 18 7 3.7877 -8.6072 0.4660 19 6 4.0756 -7.5568 1.4290 20 1 5.0020 -7.0675 1.1283 21 6 4.2512 -8.1165 2.8390 22 6 4.6307 -6.9713 3.7833 23 6 3.5365 -5.9036 3.7750 24 6 3.3430 -5.3639 2.3545 25 6 2.9518 -6.5198 1.4355 26 1 2.0363 -6.9825 1.8041 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6248 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0022 31 1 1.1305 -7.3599 -0.5424 32 1 2.2241 -6.9402 -1.8800 33 1 4.2168 -9.4693 0.5814 34 1 5.0423 -8.8664 2.8382 35 1 3.3170 -8.5691 3.1710 36 1 4.7491 -7.3604 4.7946 37 1 5.5711 -6.5284 3.4553 38 1 2.6017 -6.3407 4.1264 39 1 3.8241 -5.0855 4.4354 40 1 2.5525 -4.6133 2.3536 41 1 4.2726 -4.9154 2.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:01 Heat of formation + Delta-G solvation = -131.575157 kcal Electronic energy + Delta-G solvation = -22702.391869 eV Core-core repulsion = 19386.330610 eV Total energy + Delta-G solvation = -3316.061258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.17552 -40.31524 -39.16739 -36.20574 -35.57239 -34.80860 -34.21192 -30.90875 -30.20231 -29.48855 -26.36093 -24.44065 -23.72397 -23.41752 -21.40036 -20.95926 -20.26064 -18.90749 -18.08229 -17.69889 -17.53307 -17.02153 -16.33543 -16.18369 -15.94238 -15.47583 -15.14293 -15.02570 -14.87401 -14.52683 -14.11175 -14.02099 -13.85911 -13.63750 -13.15593 -12.93192 -12.80930 -12.71242 -12.52465 -12.39827 -12.21207 -11.91266 -11.47611 -11.44646 -11.42460 -11.22298 -11.15971 -10.78610 -10.53959 -10.08562 -9.81920 -8.27371 -6.43510 1.45048 1.46733 1.48204 1.57872 1.70574 2.19828 2.32075 2.52611 3.08174 3.32158 3.49665 3.54194 3.61916 4.00894 4.07747 4.12312 4.18945 4.32909 4.34772 4.46207 4.49476 4.52138 4.67053 4.80542 4.94785 4.99945 5.13902 5.16053 5.22329 5.24438 5.26490 5.33363 5.39794 5.49883 5.56371 5.69675 5.83392 5.86695 6.22657 6.67440 6.89375 7.13278 7.25447 7.47737 8.84721 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.004510 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.550333 B = 6207.444229 C = 7083.011972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.509 3.491 12 O -0.601 6.601 13 C -0.093 4.093 14 H 0.126 0.874 15 C -0.120 4.120 16 C 0.532 3.468 17 O -0.600 6.600 18 N -0.700 5.700 19 C 0.148 3.852 20 H 0.100 0.900 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.081 4.081 26 H 0.067 0.933 27 H 0.268 0.732 28 H -0.015 1.015 29 H -0.012 1.012 30 H 0.409 0.591 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.544 -13.682 8.044 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.590 4.590 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.347 5.347 11 C 0.296 3.704 12 O -0.483 6.483 13 C -0.114 4.114 14 H 0.144 0.856 15 C -0.160 4.160 16 C 0.320 3.680 17 O -0.482 6.482 18 N -0.351 5.351 19 C 0.044 3.956 20 H 0.118 0.882 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.101 4.101 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.245 0.755 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.403 -13.947 7.629 21.451 hybrid contribution -0.250 0.854 -0.186 0.909 sum 14.153 -13.093 7.443 20.667 Atomic orbital electron populations 1.70142 1.08307 1.28466 1.50163 1.26030 0.95682 1.03820 0.93956 0.85198 0.78629 0.77170 0.78487 1.19860 1.21217 1.17641 1.21605 0.94332 0.90440 1.52584 0.89628 1.18535 0.88692 0.84344 0.94054 1.46208 1.11142 1.05268 1.72123 1.20977 0.89303 0.84781 0.75384 1.90648 1.19429 1.85469 1.52715 1.21398 0.99224 0.92282 0.98522 0.85590 1.21475 1.00777 0.91161 1.02620 1.20020 0.78885 0.88690 0.80418 1.90733 1.67063 1.43539 1.46827 1.45470 1.45904 1.17487 1.26211 1.21042 0.97701 0.87010 0.89891 0.88246 1.21827 1.03114 0.99102 0.91908 1.21469 0.98558 0.94607 0.99964 1.21555 0.99558 0.99255 0.95396 1.21609 1.02331 0.95874 0.95585 1.21287 0.99485 0.97110 0.92176 0.91438 0.92363 0.99689 0.99357 0.75521 0.88520 0.87847 0.75315 0.88650 0.91821 0.90094 0.90019 0.92938 0.91044 0.93909 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 41.19 29.54 68.60 2.03 43.21 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.55 -28.86 9.28 25.60 0.24 -28.63 16 8 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.27 14.11 5.43 85.63 0.46 14.57 16 10 N -0.70 -27.50 5.09 -466.79 -2.38 -29.88 16 11 C 0.51 19.11 5.57 87.66 0.49 19.59 16 12 O -0.60 -28.85 16.02 -3.02 -0.05 -28.89 16 13 C -0.09 -2.35 2.27 -11.50 -0.03 -2.38 16 14 H 0.13 2.41 8.10 -2.39 -0.02 2.39 16 15 C -0.12 -3.31 5.22 29.71 0.15 -3.15 16 16 C 0.53 13.83 7.71 87.64 0.68 14.51 16 17 O -0.60 -20.33 17.78 -3.02 -0.05 -20.38 16 18 N -0.70 -12.30 5.24 -447.59 -2.35 -14.65 16 19 C 0.15 2.05 2.71 45.08 0.12 2.17 16 20 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 21 C -0.12 -1.22 5.60 30.57 0.17 -1.05 16 22 C -0.11 -1.06 5.91 30.62 0.18 -0.87 16 23 C -0.12 -1.90 5.90 30.62 0.18 -1.72 16 24 C -0.12 -2.34 4.89 30.58 0.15 -2.19 16 25 C -0.08 -1.68 1.53 -10.92 -0.02 -1.70 16 26 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.41 12.97 8.30 -92.71 -0.77 12.20 16 31 H 0.10 3.09 7.38 -2.39 -0.02 3.08 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.41 5.85 8.71 -92.71 -0.81 5.04 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.22 6.87 -2.39 -0.02 1.20 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.98 328.68 0.20 -74.78 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.54 Total: 21.04 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 3.24 Total: 9.88 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.44 Total: -99.63 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.10 Total: -49.28 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -74.98 0.20 -74.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.795 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds