Wall clock time and date at job start Tue Mar 31 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48504 * 109.47046 * 239.99944 * 3 2 1 5 5 H 1.48497 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47178 * 120.00275 * 3 2 1 7 7 C 1.37870 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00198 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00405 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00143 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00266 * 179.97438 * 11 10 9 14 14 H 1.08994 * 109.74784 * 328.95570 * 13 11 10 15 15 C 1.53186 * 109.71555 * 208.33105 * 13 11 10 16 16 C 1.50079 * 110.30016 * 287.10940 * 15 13 11 17 17 O 1.21285 * 118.04712 * 163.75878 * 16 15 13 18 18 N 1.33634 * 123.90613 * 343.77259 * 16 15 13 19 19 C 1.45375 * 123.19159 * 3.73148 * 18 16 15 20 20 H 1.08995 * 108.76883 * 96.73156 * 19 18 16 21 21 C 1.52711 * 111.69185 * 215.90256 * 19 18 16 22 22 C 1.53509 * 108.73408 * 183.33773 * 21 19 18 23 23 C 1.52894 * 109.92698 * 300.56005 * 22 21 19 24 24 C 1.53203 * 109.95883 * 58.99366 * 23 22 21 25 25 C 1.52498 * 109.72392 * 89.29255 * 13 11 10 26 26 H 1.09009 * 109.44541 * 171.72999 * 25 13 11 27 27 H 0.97005 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47308 * 59.99365 * 9 7 2 29 29 H 1.09008 * 109.46921 * 299.99884 * 9 7 2 30 30 H 0.97003 * 119.99874 * 359.97438 * 10 9 7 31 31 H 1.08994 * 109.30183 * 166.90320 * 15 13 11 32 32 H 1.09000 * 109.30018 * 47.31082 * 15 13 11 33 33 H 0.97003 * 118.40187 * 183.75429 * 18 16 15 34 34 H 1.08999 * 109.56644 * 303.02045 * 21 19 18 35 35 H 1.08998 * 109.56695 * 63.37616 * 21 19 18 36 36 H 1.09003 * 109.34678 * 180.46259 * 22 21 19 37 37 H 1.08994 * 109.38543 * 60.68422 * 22 21 19 38 38 H 1.09001 * 109.38835 * 298.84899 * 23 22 21 39 39 H 1.08992 * 109.39188 * 179.14460 * 23 22 21 40 40 H 1.08989 * 109.57398 * 180.75477 * 24 23 22 41 41 H 1.09004 * 109.56775 * 60.38614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5613 -5.1050 0.0006 13 6 2.7331 -6.0287 0.0022 14 1 3.6408 -5.7375 -0.5262 15 6 2.1045 -7.2464 -0.6826 16 6 1.0581 -7.8587 0.2019 17 8 0.2682 -8.6306 -0.2994 18 7 0.9446 -7.6040 1.5088 19 6 1.7788 -6.6397 2.2070 20 1 1.2400 -5.6947 2.2759 21 6 2.1086 -7.1008 3.6250 22 6 2.9174 -6.0002 4.3258 23 6 4.2061 -5.7264 3.5500 24 6 3.8729 -5.2942 2.1185 25 6 3.0800 -6.4084 1.4378 26 1 3.6694 -7.3254 1.4383 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 3.1567 -3.4354 0.0021 31 1 2.8799 -7.9844 -0.8878 32 1 1.6459 -6.9351 -1.6212 33 1 0.2731 -8.0862 2.0163 34 1 1.1846 -7.2801 4.1748 35 1 2.6946 -8.0188 3.5833 36 1 3.1654 -6.3227 5.3371 37 1 2.3224 -5.0881 4.3725 38 1 4.8115 -6.6324 3.5227 39 1 4.7658 -4.9337 4.0463 40 1 4.7957 -5.1137 1.5674 41 1 3.2753 -4.3828 2.1420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:04 Heat of formation + Delta-G solvation = -103.409615 kcal Electronic energy + Delta-G solvation = -23227.326967 eV Core-core repulsion = 19912.487059 eV Total energy + Delta-G solvation = -3314.839909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16795 -38.51238 -37.90903 -34.59213 -34.08045 -33.69155 -32.29309 -29.98057 -29.18721 -27.53119 -24.81062 -22.97825 -22.72841 -22.06868 -20.38482 -20.14978 -18.89453 -16.94822 -16.72872 -16.35492 -15.82138 -15.35728 -15.01273 -14.97608 -14.55787 -14.22239 -13.99187 -13.90286 -13.43731 -13.05386 -12.92243 -12.69984 -12.11719 -12.01851 -11.90933 -11.76595 -11.59923 -11.48716 -11.24963 -11.02582 -10.90081 -10.69119 -10.48045 -10.34462 -10.27896 -9.53383 -9.45445 -9.04021 -8.81478 -8.76267 -7.93216 -6.20098 -4.27679 2.92913 3.21908 3.24105 3.27334 3.28530 3.46763 3.94020 4.30914 4.33367 4.49662 4.53802 4.76310 4.92463 5.02288 5.07889 5.16046 5.18326 5.25311 5.32101 5.33183 5.41086 5.59554 5.67176 5.69781 5.74961 5.88136 5.97148 6.00032 6.03206 6.08222 6.09077 6.35524 6.99640 7.25610 7.36976 7.46930 7.56402 7.61020 7.92977 8.46778 8.55903 8.73022 9.03234 9.39206 10.89899 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.005255 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.803298 B = 5327.263317 C = 6135.198464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.545 6.545 13 C -0.114 4.114 14 H 0.101 0.899 15 C -0.115 4.115 16 C 0.540 3.460 17 O -0.568 6.568 18 N -0.705 5.705 19 C 0.138 3.862 20 H 0.078 0.922 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.083 4.083 26 H 0.086 0.914 27 H 0.267 0.733 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.390 0.610 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.396 0.604 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.269 -12.601 7.035 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.284 3.716 12 O -0.423 6.423 13 C -0.136 4.136 14 H 0.119 0.881 15 C -0.155 4.155 16 C 0.328 3.672 17 O -0.448 6.448 18 N -0.356 5.356 19 C 0.033 3.967 20 H 0.096 0.904 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.102 4.102 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.223 0.777 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.972 -12.860 6.633 17.573 hybrid contribution 0.624 1.044 0.205 1.234 sum 10.596 -11.816 6.837 17.281 Atomic orbital electron populations 1.69965 1.06121 1.27454 1.48661 1.24945 0.94889 0.99435 0.94669 0.86489 0.79433 0.82387 0.78685 1.20064 1.21075 1.20059 1.21166 0.93172 0.90436 1.53487 0.91967 1.19091 0.88275 0.81945 0.97697 1.46527 1.11044 1.06030 1.72008 1.20241 0.89313 0.84296 0.77777 1.90719 1.16550 1.84664 1.50412 1.21458 0.99719 0.94919 0.97489 0.88083 1.21449 0.97838 0.96670 0.99523 1.19837 0.85011 0.80210 0.82128 1.90709 1.43270 1.38230 1.72603 1.45246 1.38266 1.42991 1.09070 1.20857 0.91214 0.93129 0.91513 0.90395 1.21886 1.00682 0.99175 0.94622 1.21564 0.96566 0.98865 0.98628 1.21523 0.97257 1.01349 0.95343 1.21702 1.00278 0.98379 0.95652 1.21201 0.96022 1.00247 0.92716 0.89568 0.92362 0.95602 0.95623 0.77728 0.87964 0.87714 0.76891 0.91304 0.91357 0.91559 0.91264 0.92037 0.91452 0.90820 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.22 9.28 -34.44 -0.32 -14.54 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.11 16 9 C 0.25 6.37 5.43 -5.20 -0.03 6.35 16 10 N -0.71 -13.76 4.74 -61.47 -0.29 -14.05 16 11 C 0.50 9.21 5.14 -10.99 -0.06 9.15 16 12 O -0.54 -12.53 14.33 5.55 0.08 -12.45 16 13 C -0.11 -1.48 2.54 -91.93 -0.23 -1.71 16 14 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 15 C -0.11 -1.57 5.22 -28.09 -0.15 -1.72 16 16 C 0.54 8.98 6.49 -11.79 -0.08 8.90 16 17 O -0.57 -11.56 17.78 5.55 0.10 -11.46 16 18 N -0.71 -10.08 5.07 -55.21 -0.28 -10.36 16 19 C 0.14 1.74 2.07 -68.73 -0.14 1.60 16 20 H 0.08 1.25 6.79 -51.93 -0.35 0.90 16 21 C -0.13 -1.19 5.62 -26.62 -0.15 -1.34 16 22 C -0.12 -1.07 5.91 -26.52 -0.16 -1.22 16 23 C -0.12 -1.00 5.90 -26.68 -0.16 -1.16 16 24 C -0.12 -1.23 5.10 -26.75 -0.14 -1.37 16 25 C -0.08 -0.90 1.71 -91.04 -0.16 -1.06 16 26 H 0.09 0.79 8.11 -51.92 -0.42 0.37 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.39 6.42 8.24 -40.82 -0.34 6.08 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.58 8.08 -51.93 -0.42 1.16 16 33 H 0.40 5.25 8.71 -40.82 -0.36 4.89 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.62 8.14 -51.94 -0.42 0.20 16 41 H 0.08 1.03 6.88 -51.93 -0.36 0.67 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -33.70 324.21 -8.07 -41.77 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.43 Total: 7.72 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.86 Total: 3.53 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.16 Total: -49.33 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.70 -8.07 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.639 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds