Wall clock time and date at job start Tue Mar 31 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48504 * 109.47046 * 239.99944 * 3 2 1 5 5 H 1.48497 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47178 * 120.00275 * 3 2 1 7 7 C 1.37870 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00198 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00405 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00143 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00266 * 179.97438 * 11 10 9 14 14 H 1.08994 * 109.74784 * 328.95570 * 13 11 10 15 15 C 1.53186 * 109.71555 * 208.33105 * 13 11 10 16 16 C 1.50079 * 110.30016 * 287.10940 * 15 13 11 17 17 O 1.21285 * 118.04712 * 163.75878 * 16 15 13 18 18 N 1.33634 * 123.90613 * 343.77259 * 16 15 13 19 19 C 1.45375 * 123.19159 * 3.73148 * 18 16 15 20 20 H 1.08995 * 108.76883 * 96.73156 * 19 18 16 21 21 C 1.52711 * 111.69185 * 215.90256 * 19 18 16 22 22 C 1.53509 * 108.73408 * 183.33773 * 21 19 18 23 23 C 1.52894 * 109.92698 * 300.56005 * 22 21 19 24 24 C 1.53203 * 109.95883 * 58.99366 * 23 22 21 25 25 C 1.52498 * 109.72392 * 89.29255 * 13 11 10 26 26 H 1.09009 * 109.44541 * 171.72999 * 25 13 11 27 27 H 0.97005 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47308 * 59.99365 * 9 7 2 29 29 H 1.09008 * 109.46921 * 299.99884 * 9 7 2 30 30 H 0.97003 * 119.99874 * 359.97438 * 10 9 7 31 31 H 1.08994 * 109.30183 * 166.90320 * 15 13 11 32 32 H 1.09000 * 109.30018 * 47.31082 * 15 13 11 33 33 H 0.97003 * 118.40187 * 183.75429 * 18 16 15 34 34 H 1.08999 * 109.56644 * 303.02045 * 21 19 18 35 35 H 1.08998 * 109.56695 * 63.37616 * 21 19 18 36 36 H 1.09003 * 109.34678 * 180.46259 * 22 21 19 37 37 H 1.08994 * 109.38543 * 60.68422 * 22 21 19 38 38 H 1.09001 * 109.38835 * 298.84899 * 23 22 21 39 39 H 1.08992 * 109.39188 * 179.14460 * 23 22 21 40 40 H 1.08989 * 109.57398 * 180.75477 * 24 23 22 41 41 H 1.09004 * 109.56775 * 60.38614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5613 -5.1050 0.0006 13 6 2.7331 -6.0287 0.0022 14 1 3.6408 -5.7375 -0.5262 15 6 2.1045 -7.2464 -0.6826 16 6 1.0581 -7.8587 0.2019 17 8 0.2682 -8.6306 -0.2994 18 7 0.9446 -7.6040 1.5088 19 6 1.7788 -6.6397 2.2070 20 1 1.2400 -5.6947 2.2759 21 6 2.1086 -7.1008 3.6250 22 6 2.9174 -6.0002 4.3258 23 6 4.2061 -5.7264 3.5500 24 6 3.8729 -5.2942 2.1185 25 6 3.0800 -6.4084 1.4378 26 1 3.6694 -7.3254 1.4383 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 3.1567 -3.4354 0.0021 31 1 2.8799 -7.9844 -0.8878 32 1 1.6459 -6.9351 -1.6212 33 1 0.2731 -8.0862 2.0163 34 1 1.1846 -7.2801 4.1748 35 1 2.6946 -8.0188 3.5833 36 1 3.1654 -6.3227 5.3371 37 1 2.3224 -5.0881 4.3725 38 1 4.8115 -6.6324 3.5227 39 1 4.7658 -4.9337 4.0463 40 1 4.7957 -5.1137 1.5674 41 1 3.2753 -4.3828 2.1420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:03 Heat of formation + Delta-G solvation = -129.242243 kcal Electronic energy + Delta-G solvation = -23228.447154 eV Core-core repulsion = 19912.487059 eV Total energy + Delta-G solvation = -3315.960095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34790 -40.00413 -39.04485 -36.22266 -35.41301 -34.88408 -34.19054 -30.86156 -30.17683 -29.45114 -26.21507 -24.45927 -23.68438 -23.30688 -21.85065 -20.98715 -20.32611 -18.51776 -18.01813 -17.53669 -17.38196 -17.02185 -16.46498 -16.19111 -16.03955 -15.23282 -15.14325 -14.97849 -14.81891 -14.44696 -14.03163 -13.95530 -13.79609 -13.56697 -13.03354 -12.94762 -12.80305 -12.68519 -12.65140 -12.47166 -12.23377 -12.09608 -11.51420 -11.44154 -11.31289 -11.16982 -10.78372 -10.75042 -10.61405 -10.02931 -9.79063 -8.28585 -6.45416 1.43499 1.47364 1.55526 1.64299 1.77446 2.30435 2.36069 2.57389 3.06629 3.36745 3.52509 3.59607 3.67220 4.03564 4.11866 4.16859 4.25696 4.39431 4.43479 4.47355 4.55563 4.60668 4.72100 4.79055 4.94532 4.96471 5.11829 5.18080 5.23029 5.24230 5.26019 5.34423 5.38266 5.49536 5.59665 5.70148 5.84377 5.85580 6.38053 6.66203 6.92391 7.22334 7.24525 7.52205 8.83345 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.005255 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.803298 B = 5327.263317 C = 6135.198464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.270 3.730 10 N -0.699 5.699 11 C 0.497 3.503 12 O -0.598 6.598 13 C -0.100 4.100 14 H 0.146 0.854 15 C -0.113 4.113 16 C 0.528 3.472 17 O -0.617 6.617 18 N -0.701 5.701 19 C 0.135 3.865 20 H 0.031 0.969 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.077 4.077 26 H 0.127 0.873 27 H 0.267 0.733 28 H -0.019 1.019 29 H -0.017 1.017 30 H 0.409 0.591 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.755 -13.153 7.684 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.590 4.590 8 H 0.105 0.895 9 C 0.147 3.853 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.480 6.480 13 C -0.121 4.121 14 H 0.164 0.836 15 C -0.153 4.153 16 C 0.317 3.683 17 O -0.501 6.501 18 N -0.349 5.349 19 C 0.030 3.970 20 H 0.049 0.951 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.096 4.096 26 H 0.145 0.855 27 H 0.076 0.924 28 H -0.001 1.001 29 H 0.001 0.999 30 H 0.245 0.755 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.529 -13.418 7.312 21.085 hybrid contribution -0.879 1.185 0.041 1.476 sum 13.650 -12.232 7.352 19.749 Atomic orbital electron populations 1.70148 1.08413 1.28535 1.50148 1.26074 0.95685 1.03980 0.93926 0.85230 0.77904 0.76615 0.79626 1.18594 1.21481 1.18365 1.21586 0.94354 0.90413 1.52637 0.89496 1.18454 0.88679 0.84577 0.93596 1.46199 1.10998 1.05286 1.72371 1.21342 0.89718 0.85043 0.75474 1.90700 1.19564 1.85413 1.52285 1.21510 0.99164 0.91642 0.99820 0.83588 1.21544 0.98140 0.97780 0.97847 1.20508 0.85259 0.79695 0.82814 1.90678 1.45273 1.40572 1.73557 1.45336 1.38291 1.42499 1.08793 1.20972 0.91424 0.90765 0.93815 0.95112 1.21854 1.01204 1.00218 0.92232 1.21591 0.96669 0.97479 0.99960 1.21524 0.96888 1.02733 0.93886 1.21732 1.00587 0.96387 0.97277 1.21322 0.95323 1.02295 0.90619 0.85543 0.92393 1.00149 0.99923 0.75501 0.83120 0.89566 0.76858 0.91547 0.88870 0.89538 0.93990 0.89359 0.90919 0.87954 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.44 0.28 -56.06 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.98 41.46 29.54 68.60 2.03 43.49 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.55 -29.17 9.28 25.60 0.24 -28.93 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.52 5.43 85.63 0.46 14.99 16 10 N -0.70 -27.62 4.74 -466.79 -2.21 -29.84 16 11 C 0.50 18.65 5.14 87.66 0.45 19.10 16 12 O -0.60 -29.27 14.33 -3.05 -0.04 -29.31 16 13 C -0.10 -2.34 2.54 -11.64 -0.03 -2.36 16 14 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.11 -2.88 5.22 29.72 0.16 -2.72 16 16 C 0.53 17.50 6.49 87.64 0.57 18.07 16 17 O -0.62 -25.75 17.78 -3.05 -0.05 -25.81 16 18 N -0.70 -20.10 5.07 -447.60 -2.27 -22.37 16 19 C 0.14 3.31 2.07 45.08 0.09 3.41 16 20 H 0.03 1.05 6.79 -2.39 -0.02 1.04 16 21 C -0.12 -2.00 5.62 30.67 0.17 -1.83 16 22 C -0.12 -1.91 5.91 30.73 0.18 -1.72 16 23 C -0.11 -1.49 5.90 30.63 0.18 -1.31 16 24 C -0.12 -2.05 5.10 30.58 0.16 -1.89 16 25 C -0.08 -1.42 1.71 -11.07 -0.02 -1.44 16 26 H 0.13 1.52 8.11 -2.38 -0.02 1.50 16 27 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 28 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 29 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 30 H 0.41 12.89 8.24 -92.71 -0.76 12.12 16 31 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.09 2.56 8.08 -2.39 -0.02 2.54 16 33 H 0.40 10.84 8.71 -92.71 -0.81 10.04 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.04 1.10 6.88 -2.38 -0.02 1.08 16 Total: -1.00 -80.96 324.21 0.28 -80.68 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.53 Total: 25.25 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 3.07 Total: 13.96 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.20 Total: -108.26 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.10 Total: -55.12 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -80.96 0.28 -80.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.563 kcal (2) G-P(sol) polarization free energy of solvation -80.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds