Wall clock time and date at job start Tue Mar 31 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.41491 * 2 1 4 4 O 1.20824 * 120.00239 * 245.00654 * 3 2 1 5 5 O 1.34231 * 119.99681 * 65.01085 * 3 2 1 6 6 C 1.45199 * 116.99618 * 184.89470 * 5 3 2 7 7 C 1.53005 * 109.47238 * 184.00502 * 6 5 3 8 8 C 1.50703 * 115.54500 * 34.10993 * 7 6 5 9 9 H 1.08002 * 120.00009 * 265.96128 * 8 7 6 10 10 C 1.37884 * 119.99802 * 85.96357 * 8 7 6 11 11 N 1.31511 * 120.00224 * 350.89731 * 10 8 7 12 12 Si 1.86802 * 119.99643 * 170.90186 * 10 8 7 13 13 H 1.48499 * 109.47139 * 89.99884 * 12 10 8 14 14 H 1.48506 * 109.46745 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47432 * 329.99691 * 12 10 8 16 16 C 1.52996 * 117.50268 * 248.39996 * 7 6 5 17 17 C 1.52996 * 117.50062 * 179.77422 * 7 6 5 18 18 C 1.52959 * 109.35362 * 119.82138 * 2 1 3 19 19 C 1.53237 * 109.40483 * 56.47584 * 18 2 1 20 20 C 1.51266 * 108.53745 * 54.62037 * 19 18 2 21 21 O 1.20761 * 120.84487 * 128.67391 * 20 19 18 22 22 C 1.51260 * 118.30164 * 308.65968 * 20 19 18 23 23 C 1.52955 * 109.41672 * 240.14008 * 2 1 3 24 24 H 1.09001 * 109.46790 * 59.99790 * 1 2 3 25 25 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47252 * 300.00420 * 1 2 3 27 27 H 1.09004 * 109.47168 * 64.00771 * 6 5 3 28 28 H 1.08997 * 109.47465 * 304.00741 * 6 5 3 29 29 H 0.96997 * 119.99846 * 185.02332 * 11 10 8 30 30 H 1.08998 * 117.49866 * 0.02562 * 16 7 6 31 31 H 1.09005 * 117.49658 * 145.01785 * 16 7 6 32 32 H 1.09000 * 117.50166 * 214.98036 * 17 7 6 33 33 H 1.08999 * 117.49714 * 359.97438 * 17 7 6 34 34 H 1.08998 * 109.48388 * 176.44779 * 18 2 1 35 35 H 1.09002 * 109.48438 * 296.49441 * 18 2 1 36 36 H 1.09001 * 109.62044 * 294.90997 * 19 18 2 37 37 H 1.09000 * 109.78358 * 174.43790 * 19 18 2 38 38 H 1.09001 * 109.62781 * 291.62692 * 22 20 19 39 39 H 1.09004 * 109.78550 * 171.15584 * 22 20 19 40 40 H 1.09001 * 109.48346 * 63.54128 * 23 2 1 41 41 H 1.08997 * 109.48450 * 183.57216 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0309 1.4213 0.0000 4 8 2.6487 1.8442 -0.9484 5 8 1.7908 2.2175 1.0537 6 6 2.2064 3.6041 0.9403 7 6 1.9437 4.3252 2.2640 8 6 2.1199 3.4893 3.5055 9 1 1.2692 2.9908 3.9461 10 6 3.3673 3.3610 4.0789 11 7 4.4297 3.8148 3.4505 12 14 3.5481 2.5426 5.7483 13 1 3.7561 1.0838 5.5645 14 1 4.7148 3.1232 6.4604 15 1 2.3171 2.7704 6.5472 16 6 0.8495 5.3944 2.2810 17 6 2.3217 5.8053 2.3493 18 6 2.0369 -0.7177 1.2520 19 6 1.4525 -2.1334 1.2991 20 6 1.7855 -2.8346 0.0008 21 8 2.3025 -3.9259 0.0014 22 6 1.4540 -2.1339 -1.2982 23 6 2.0385 -0.7182 -1.2511 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6414 4.0889 0.1441 28 1 3.2706 3.6467 0.7083 29 1 5.3137 3.6602 3.8186 30 1 0.3164 5.5838 1.3494 31 1 0.2566 5.4933 3.1904 32 1 2.6974 6.1746 3.3036 33 1 2.7579 6.2652 1.4626 34 1 3.1250 -0.7745 1.2231 35 1 1.7249 -0.1659 2.1388 36 1 0.3704 -2.0790 1.4187 37 1 1.8858 -2.6839 2.1342 38 1 0.3721 -2.0796 -1.4191 39 1 1.8887 -2.6818 -2.1343 40 1 1.7275 -0.1669 -2.1384 41 1 3.1266 -0.7747 -1.2209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835189341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:11 Heat of formation + Delta-G solvation = -115.382672 kcal Electronic energy + Delta-G solvation = -22882.447808 eV Core-core repulsion = 19534.795957 eV Total energy + Delta-G solvation = -3347.651850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75908 -39.40155 -37.29751 -36.45195 -35.22874 -31.97069 -31.41552 -30.58590 -27.07563 -26.56410 -25.28098 -23.32596 -22.59252 -21.21549 -20.03725 -19.30540 -18.26405 -17.02186 -16.74983 -15.81856 -15.63203 -15.55170 -15.21339 -14.81346 -14.55087 -14.43357 -13.97643 -13.56151 -13.05840 -12.90420 -12.55511 -12.23696 -12.15929 -12.14020 -11.71910 -11.65707 -11.49342 -11.34398 -11.00064 -10.93774 -10.80655 -10.64542 -10.53116 -10.37136 -9.91408 -9.79245 -9.52633 -9.43644 -8.92408 -8.47868 -8.16222 -6.06624 -4.10625 1.83889 2.75663 3.26193 3.30621 3.34491 3.37289 3.99766 4.37216 4.42484 4.61327 4.78057 4.87904 5.05403 5.11907 5.13216 5.19026 5.21313 5.27251 5.49436 5.55165 5.69779 5.76589 5.81175 5.92490 5.92957 5.96127 6.05203 6.15548 6.26138 6.29816 6.32243 6.44818 6.63370 6.73234 6.97247 7.14950 7.33043 7.37506 7.45609 7.86235 8.30976 8.50128 8.88514 9.53503 11.02465 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.005706 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.614901 B = 4905.791822 C = 5857.075801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C 0.462 3.538 4 O -0.525 6.525 5 O -0.316 6.316 6 C 0.117 3.883 7 C 0.037 3.963 8 C -0.481 4.481 9 H 0.063 0.937 10 C 0.072 3.928 11 N -0.881 5.881 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.209 4.209 17 C -0.150 4.150 18 C -0.106 4.106 19 C -0.169 4.169 20 C 0.362 3.638 21 O -0.462 6.462 22 C -0.169 4.169 23 C -0.094 4.094 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 -8.006 -6.683 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 C 0.305 3.695 4 O -0.415 6.415 5 O -0.229 6.229 6 C 0.043 3.957 7 C 0.037 3.963 8 C -0.519 4.519 9 H 0.081 0.919 10 C -0.132 4.132 11 N -0.518 5.518 12 Si 0.715 3.285 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.246 4.246 17 C -0.188 4.188 18 C -0.143 4.143 19 C -0.206 4.206 20 C 0.238 3.762 21 O -0.336 6.336 22 C -0.207 4.207 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.269 -8.328 -6.867 13.014 hybrid contribution 0.398 -0.124 0.740 0.850 sum -6.870 -8.453 -6.127 12.498 Atomic orbital electron populations 1.21976 0.91659 1.02880 1.03778 1.20483 0.98007 0.89548 0.97483 1.23292 0.76779 0.88590 0.80822 1.90596 1.38436 1.76315 1.36188 1.86572 1.73505 1.23561 1.39305 1.22702 0.99216 0.76167 0.97587 1.18782 0.96962 0.87655 0.92914 1.20230 0.94222 1.30164 1.07293 0.91899 1.24968 0.95937 0.95037 0.97219 1.69970 0.97875 1.45164 1.38810 0.86656 0.77756 0.79497 0.84542 1.20587 1.21253 1.19745 1.23132 0.92109 1.09028 1.00337 1.22553 0.95403 0.99858 1.00957 1.21590 1.01343 0.93411 0.97966 1.22363 1.03863 0.97305 0.97093 1.24977 0.73016 0.85141 0.93104 1.90399 1.32424 1.20596 1.90197 1.22369 1.03705 0.97250 0.97337 1.21429 1.01514 0.92921 0.97317 0.91939 0.91090 0.90342 0.94409 0.91303 0.92956 0.91582 0.90046 0.89548 0.91681 0.90796 0.87969 0.87753 0.88862 0.87920 0.89039 0.89570 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.55 37.16 0.28 -1.26 16 2 C -0.05 -0.72 0.71 -155.70 -0.11 -0.83 16 3 C 0.46 8.55 6.55 36.01 0.24 8.79 16 4 O -0.52 -10.91 15.58 -18.75 -0.29 -11.20 16 5 O -0.32 -6.69 9.13 -39.26 -0.36 -7.05 16 6 C 0.12 2.66 5.67 37.16 0.21 2.87 16 7 C 0.04 0.89 1.82 -155.66 -0.28 0.61 16 8 C -0.48 -12.53 8.11 -34.44 -0.28 -12.81 16 9 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 10 C 0.07 1.89 5.37 -17.82 -0.10 1.80 16 11 N -0.88 -24.43 12.97 55.43 0.72 -23.71 16 12 Si 0.89 20.49 29.55 -169.99 -5.02 15.46 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C -0.21 -4.34 9.88 -26.73 -0.26 -4.61 16 17 C -0.15 -3.39 9.49 -26.73 -0.25 -3.64 16 18 C -0.11 -1.40 4.71 -26.63 -0.13 -1.52 16 19 C -0.17 -1.80 5.64 -27.48 -0.16 -1.95 16 20 C 0.36 4.24 6.71 -28.48 -0.19 4.05 16 21 O -0.46 -6.98 17.89 6.00 0.11 -6.88 16 22 C -0.17 -1.62 5.64 -27.49 -0.16 -1.77 16 23 C -0.09 -1.11 4.15 -26.63 -0.11 -1.22 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.55 4.91 -51.93 -0.25 0.30 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.79 7.90 -51.93 -0.41 0.38 16 28 H 0.07 1.72 8.00 -51.93 -0.42 1.31 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 31 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.49 7.92 -51.93 -0.41 1.07 16 36 H 0.10 0.87 6.67 -51.93 -0.35 0.52 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.74 6.67 -51.93 -0.35 0.40 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -30.49 335.89 -7.45 -37.93 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.36 Total: 1.88 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.30 Total: -11.50 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.72 Total: -23.71 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.54 Total: -25.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.49 -7.45 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.451 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds