Wall clock time and date at job start Tue Mar 31 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.41491 * 2 1 4 4 O 1.20824 * 120.00239 * 245.00654 * 3 2 1 5 5 O 1.34231 * 119.99681 * 65.01085 * 3 2 1 6 6 C 1.45199 * 116.99618 * 184.89470 * 5 3 2 7 7 C 1.53005 * 109.47238 * 184.00502 * 6 5 3 8 8 C 1.50703 * 115.54500 * 34.10993 * 7 6 5 9 9 H 1.08002 * 120.00009 * 265.96128 * 8 7 6 10 10 C 1.37884 * 119.99802 * 85.96357 * 8 7 6 11 11 N 1.31511 * 120.00224 * 350.89731 * 10 8 7 12 12 Si 1.86802 * 119.99643 * 170.90186 * 10 8 7 13 13 H 1.48499 * 109.47139 * 89.99884 * 12 10 8 14 14 H 1.48506 * 109.46745 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47432 * 329.99691 * 12 10 8 16 16 C 1.52996 * 117.50268 * 248.39996 * 7 6 5 17 17 C 1.52996 * 117.50062 * 179.77422 * 7 6 5 18 18 C 1.52959 * 109.35362 * 119.82138 * 2 1 3 19 19 C 1.53237 * 109.40483 * 56.47584 * 18 2 1 20 20 C 1.51266 * 108.53745 * 54.62037 * 19 18 2 21 21 O 1.20761 * 120.84487 * 128.67391 * 20 19 18 22 22 C 1.51260 * 118.30164 * 308.65968 * 20 19 18 23 23 C 1.52955 * 109.41672 * 240.14008 * 2 1 3 24 24 H 1.09001 * 109.46790 * 59.99790 * 1 2 3 25 25 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47252 * 300.00420 * 1 2 3 27 27 H 1.09004 * 109.47168 * 64.00771 * 6 5 3 28 28 H 1.08997 * 109.47465 * 304.00741 * 6 5 3 29 29 H 0.96997 * 119.99846 * 185.02332 * 11 10 8 30 30 H 1.08998 * 117.49866 * 0.02562 * 16 7 6 31 31 H 1.09005 * 117.49658 * 145.01785 * 16 7 6 32 32 H 1.09000 * 117.50166 * 214.98036 * 17 7 6 33 33 H 1.08999 * 117.49714 * 359.97438 * 17 7 6 34 34 H 1.08998 * 109.48388 * 176.44779 * 18 2 1 35 35 H 1.09002 * 109.48438 * 296.49441 * 18 2 1 36 36 H 1.09001 * 109.62044 * 294.90997 * 19 18 2 37 37 H 1.09000 * 109.78358 * 174.43790 * 19 18 2 38 38 H 1.09001 * 109.62781 * 291.62692 * 22 20 19 39 39 H 1.09004 * 109.78550 * 171.15584 * 22 20 19 40 40 H 1.09001 * 109.48346 * 63.54128 * 23 2 1 41 41 H 1.08997 * 109.48450 * 183.57216 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0309 1.4213 0.0000 4 8 2.6487 1.8442 -0.9484 5 8 1.7908 2.2175 1.0537 6 6 2.2064 3.6041 0.9403 7 6 1.9437 4.3252 2.2640 8 6 2.1199 3.4893 3.5055 9 1 1.2692 2.9908 3.9461 10 6 3.3673 3.3610 4.0789 11 7 4.4297 3.8148 3.4505 12 14 3.5481 2.5426 5.7483 13 1 3.7561 1.0838 5.5645 14 1 4.7148 3.1232 6.4604 15 1 2.3171 2.7704 6.5472 16 6 0.8495 5.3944 2.2810 17 6 2.3217 5.8053 2.3493 18 6 2.0369 -0.7177 1.2520 19 6 1.4525 -2.1334 1.2991 20 6 1.7855 -2.8346 0.0008 21 8 2.3025 -3.9259 0.0014 22 6 1.4540 -2.1339 -1.2982 23 6 2.0385 -0.7182 -1.2511 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6414 4.0889 0.1441 28 1 3.2706 3.6467 0.7083 29 1 5.3137 3.6602 3.8186 30 1 0.3164 5.5838 1.3494 31 1 0.2566 5.4933 3.1904 32 1 2.6974 6.1746 3.3036 33 1 2.7579 6.2652 1.4626 34 1 3.1250 -0.7745 1.2231 35 1 1.7249 -0.1659 2.1388 36 1 0.3704 -2.0790 1.4187 37 1 1.8858 -2.6839 2.1342 38 1 0.3721 -2.0796 -1.4191 39 1 1.8887 -2.6818 -2.1343 40 1 1.7275 -0.1669 -2.1384 41 1 3.1266 -0.7747 -1.2209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835189341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:11 Heat of formation + Delta-G solvation = -131.368999 kcal Electronic energy + Delta-G solvation = -22883.141027 eV Core-core repulsion = 19534.795957 eV Total energy + Delta-G solvation = -3348.345070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99847 -40.65823 -38.77287 -37.87147 -36.88376 -33.98246 -32.34231 -31.59637 -28.66525 -27.66395 -27.22706 -24.27952 -23.89593 -22.95816 -21.26635 -21.14318 -19.33887 -18.51501 -18.25240 -17.46582 -17.15039 -16.59889 -16.46678 -16.31557 -15.86546 -15.57184 -15.48121 -14.90567 -14.46461 -14.28633 -13.86558 -13.66467 -13.43461 -13.36020 -12.99781 -12.89122 -12.83889 -12.63636 -12.51865 -12.45258 -12.34955 -12.10704 -11.83833 -11.66043 -11.58630 -11.49034 -11.11100 -10.79794 -10.46080 -10.40800 -9.97707 -8.08998 -6.17631 0.90709 1.28236 1.41685 1.44805 1.53397 1.88460 2.44274 3.11338 3.19469 3.37635 3.42664 3.57937 3.70365 3.96396 4.02663 4.20187 4.21348 4.23586 4.26410 4.38897 4.48225 4.57527 4.65790 4.68591 4.83354 4.88342 4.91446 4.94092 4.98480 5.00460 5.02813 5.07849 5.17965 5.29957 5.39836 5.43182 5.59866 5.79024 5.80277 6.38651 6.46452 6.83403 6.92686 7.49239 8.99594 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.005706 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.614901 B = 4905.791822 C = 5857.075801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.455 3.545 4 O -0.553 6.553 5 O -0.328 6.328 6 C 0.126 3.874 7 C 0.003 3.997 8 C -0.485 4.485 9 H 0.059 0.941 10 C 0.025 3.975 11 N -0.914 5.914 12 Si 0.944 3.056 13 H -0.276 1.276 14 H -0.290 1.290 15 H -0.263 1.263 16 C -0.177 4.177 17 C -0.157 4.157 18 C -0.104 4.104 19 C -0.161 4.161 20 C 0.365 3.635 21 O -0.499 6.499 22 C -0.158 4.158 23 C -0.090 4.090 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.257 0.743 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 -9.152 -7.018 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 C 0.300 3.700 4 O -0.445 6.445 5 O -0.242 6.242 6 C 0.052 3.948 7 C 0.003 3.997 8 C -0.523 4.523 9 H 0.078 0.922 10 C -0.175 4.175 11 N -0.552 5.552 12 Si 0.770 3.230 13 H -0.201 1.201 14 H -0.216 1.216 15 H -0.188 1.188 16 C -0.214 4.214 17 C -0.194 4.194 18 C -0.141 4.141 19 C -0.198 4.198 20 C 0.243 3.757 21 O -0.376 6.376 22 C -0.195 4.195 23 C -0.128 4.128 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.791 -9.471 -7.198 15.407 hybrid contribution 1.184 0.272 0.810 1.460 sum -8.608 -9.199 -6.388 14.125 Atomic orbital electron populations 1.22045 0.88684 1.05359 1.03934 1.20658 1.00234 0.85782 0.98210 1.24440 0.75887 0.90098 0.79593 1.90575 1.39658 1.77209 1.37023 1.86576 1.73694 1.23084 1.40830 1.22414 0.97289 0.77499 0.97570 1.18933 0.99940 0.88186 0.92687 1.20481 0.93976 1.29904 1.07968 0.92249 1.25642 0.95779 0.95902 1.00145 1.70095 0.98066 1.46839 1.40244 0.85765 0.77705 0.78661 0.80881 1.20139 1.21627 1.18758 1.23143 0.91009 1.05278 1.01961 1.22480 0.97352 0.99202 1.00377 1.21513 1.00173 0.95086 0.97363 1.22351 1.05773 0.94877 0.96806 1.25330 0.71602 0.84490 0.94233 1.90403 1.34065 1.22413 1.90675 1.22360 1.05860 0.94906 0.96349 1.21396 1.00402 0.94361 0.96637 0.91015 0.87367 0.91110 0.92651 0.94931 0.93363 0.88708 0.89493 0.91549 0.90736 0.93068 0.89445 0.84339 0.88975 0.84250 0.88141 0.88959 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.55 71.98 0.54 -2.00 16 2 C -0.05 -1.21 0.71 -52.96 -0.04 -1.25 16 3 C 0.46 16.88 6.55 71.24 0.47 17.35 16 4 O -0.55 -23.37 15.58 21.97 0.34 -23.03 16 5 O -0.33 -14.01 9.13 -51.43 -0.47 -14.48 16 6 C 0.13 5.82 5.67 71.98 0.41 6.23 16 7 C 0.00 0.14 1.82 -52.93 -0.10 0.04 16 8 C -0.49 -25.39 8.11 25.60 0.21 -25.18 16 9 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 10 C 0.02 1.34 5.37 84.66 0.45 1.79 16 11 N -0.91 -52.09 12.97 21.45 0.28 -51.81 16 12 Si 0.94 42.37 29.55 68.60 2.03 44.40 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 C -0.18 -7.04 9.88 30.59 0.30 -6.74 16 17 C -0.16 -7.06 9.49 30.59 0.29 -6.77 16 18 C -0.10 -2.67 4.71 30.66 0.14 -2.53 16 19 C -0.16 -3.05 5.64 30.11 0.17 -2.88 16 20 C 0.36 7.70 6.71 29.46 0.20 7.90 16 21 O -0.50 -14.35 17.89 -1.45 -0.03 -14.37 16 22 C -0.16 -2.49 5.64 30.10 0.17 -2.32 16 23 C -0.09 -1.98 4.15 30.66 0.13 -1.85 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.11 4.91 -2.39 -0.01 1.09 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.29 7.90 -2.38 -0.02 2.27 16 28 H 0.03 1.70 8.00 -2.39 -0.02 1.68 16 29 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 30 H 0.09 3.23 8.05 -2.39 -0.02 3.21 16 31 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 32 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 36 H 0.14 1.70 6.67 -2.39 -0.02 1.68 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.14 1.25 6.67 -2.39 -0.02 1.23 16 39 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.09 1.95 7.93 -2.39 -0.02 1.93 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.91 335.89 6.51 -61.40 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.01 Total: 16.09 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.35 Total: -18.20 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.28 Total: -51.81 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.15 Total: -51.88 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -67.91 6.51 -61.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.968 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds