Wall clock time and date at job start Tue Mar 31 2020 01:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 C 1.52999 * 109.47422 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47651 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47438 * 179.97438 * 15 14 13 17 17 O 1.20758 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00152 * 179.97438 * 16 15 14 19 19 C 1.52995 * 117.50037 * 223.62592 * 18 16 15 20 20 C 1.53000 * 117.49642 * 154.99928 * 18 16 15 21 21 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 22 22 C 1.53965 * 87.01865 * 220.04393 * 21 9 7 23 23 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 24 24 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 25 25 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 26 26 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 27 27 H 1.09002 * 109.47129 * 300.00400 * 14 13 11 28 28 H 1.09004 * 109.47160 * 60.00122 * 14 13 11 29 29 H 1.09002 * 109.47145 * 300.00346 * 15 14 13 30 30 H 1.09003 * 109.47237 * 59.99586 * 15 14 13 31 31 H 1.08998 * 115.54649 * 9.33790 * 18 16 15 32 32 H 1.08993 * 117.49727 * 359.97438 * 19 18 16 33 33 H 1.09006 * 117.49588 * 145.02712 * 19 18 16 34 34 H 1.09007 * 117.49651 * 214.98032 * 20 18 16 35 35 H 1.08997 * 117.50138 * 359.97438 * 20 18 16 36 36 H 1.09003 * 113.61463 * 334.56002 * 21 9 7 37 37 H 1.08998 * 113.61742 * 105.46749 * 21 9 7 38 38 H 1.08997 * 113.53497 * 270.81080 * 22 21 9 39 39 H 1.09004 * 113.74018 * 139.93945 * 22 21 9 40 40 H 1.08989 * 113.61692 * 254.53434 * 23 9 7 41 41 H 1.08997 * 113.60746 * 25.35640 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 6 1.0637 -3.1599 4.7587 15 6 0.2212 -3.4293 6.0071 16 6 1.1223 -3.5193 7.2115 17 8 2.3153 -3.3816 7.0847 18 6 0.5346 -3.7799 8.5746 19 6 1.0675 -2.9500 9.7442 20 6 1.4412 -4.4287 9.6224 21 6 2.1425 -3.7147 -0.3463 22 6 0.9944 -4.2328 -1.2317 23 6 0.5566 -2.7668 -1.3871 24 1 -0.4850 -0.8370 -0.0725 25 1 -0.5644 -2.2568 3.6745 26 1 -0.3899 -4.0090 3.4150 27 1 1.7767 -3.9726 4.6196 28 1 1.6029 -2.2203 4.8796 29 1 -0.4921 -2.6170 6.1463 30 1 -0.3177 -4.3691 5.8859 31 1 -0.5217 -4.0483 8.5875 32 1 1.8435 -2.2158 9.5279 33 1 0.3616 -2.6721 10.5269 34 1 0.9812 -5.1236 10.3251 35 1 2.4626 -4.6674 9.3259 36 1 3.0455 -3.4658 -0.9037 37 1 2.3401 -4.3402 0.5242 38 1 0.2739 -4.8489 -0.6937 39 1 1.3300 -4.6894 -2.1628 40 1 -0.5240 -2.6282 -1.3556 41 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835400524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:09 Heat of formation + Delta-G solvation = -94.284298 kcal Electronic energy + Delta-G solvation = -21949.936770 eV Core-core repulsion = 18603.199814 eV Total energy + Delta-G solvation = -3346.736956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06891 -39.53003 -37.32585 -36.35784 -34.37249 -33.92394 -32.36809 -29.25540 -26.06425 -25.11822 -24.68051 -22.77743 -22.73622 -21.70496 -19.91585 -19.39643 -18.35494 -17.41252 -16.86896 -16.00784 -15.88187 -15.27615 -15.16516 -14.88435 -14.46140 -14.16867 -13.72480 -13.40085 -13.20997 -12.92133 -12.44010 -12.09691 -11.95861 -11.89411 -11.78843 -11.38449 -11.19939 -10.94844 -10.81881 -10.80135 -10.60562 -10.49733 -10.37391 -10.15215 -10.08077 -9.99772 -9.68838 -9.32478 -8.97267 -8.43946 -8.12479 -6.36609 -4.14252 1.76302 3.40359 3.44093 3.46515 3.54925 3.60657 3.65275 3.96261 4.46603 4.52179 4.60020 4.75949 4.90212 5.08414 5.10521 5.28030 5.31595 5.35493 5.51521 5.55165 5.58422 5.62202 5.64167 5.70708 5.78196 5.79434 5.82914 6.07797 6.28197 6.31215 6.34736 6.52373 6.68390 6.70754 6.87635 7.09591 7.37783 7.45973 7.77075 8.19544 8.44579 8.84239 9.10343 9.61903 11.01480 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003935 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.981778 B = 7114.157432 C = 7930.619998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.593 4.593 8 H 0.058 0.942 9 C 0.213 3.787 10 O -0.357 6.357 11 C 0.460 3.540 12 O -0.501 6.501 13 C -0.117 4.117 14 C -0.098 4.098 15 C -0.164 4.164 16 C 0.381 3.619 17 O -0.449 6.449 18 C -0.223 4.223 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.111 4.111 24 H 0.279 0.721 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -8.638 13.681 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.892 3.108 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.076 0.924 9 C 0.179 3.821 10 O -0.274 6.274 11 C 0.301 3.699 12 O -0.388 6.388 13 C -0.155 4.155 14 C -0.136 4.136 15 C -0.202 4.202 16 C 0.256 3.744 17 O -0.322 6.322 18 C -0.242 4.242 19 C -0.188 4.188 20 C -0.192 4.192 21 C -0.182 4.182 22 C -0.186 4.186 23 C -0.149 4.149 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.102 -6.888 13.641 15.593 hybrid contribution 0.049 -1.668 -0.045 1.669 sum -3.053 -8.555 13.596 16.352 Atomic orbital electron populations 1.70700 1.06739 1.31977 1.43584 1.25832 0.96529 1.02507 0.92752 0.83630 0.75068 0.75332 0.76804 1.20705 1.21339 1.21211 1.22037 0.94411 0.90492 1.56132 0.92402 1.20816 0.86842 0.93848 0.80573 1.86365 1.43832 1.81247 1.15955 1.22905 0.87710 0.74091 0.85178 1.90590 1.16238 1.45102 1.86904 1.21353 0.98843 1.04107 0.91208 1.21184 0.97178 1.04532 0.90703 1.22068 0.99630 1.04489 0.93968 1.23812 0.89303 0.71090 0.90161 1.90426 1.18000 1.36177 1.87584 1.22913 1.01128 1.08972 0.91142 1.22939 1.03216 0.94799 0.97866 1.22953 1.00451 0.95918 0.99833 1.23353 0.97557 0.98593 0.98737 1.22987 0.99015 0.97312 0.99284 1.22966 1.00014 0.94027 0.97869 0.90936 0.88507 0.89008 0.90740 0.90387 0.88059 0.88272 0.85710 0.88036 0.87813 0.87951 0.87832 0.90071 0.92914 0.91291 0.92642 0.92360 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.51 55.43 0.75 -25.78 16 2 C 0.03 0.90 5.40 -17.82 -0.10 0.80 16 3 Si 1.06 25.75 29.90 -169.99 -5.08 20.67 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.59 -17.08 7.35 -34.44 -0.25 -17.33 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.21 5.45 0.11 -90.96 -0.01 5.44 16 10 O -0.36 -8.91 9.10 -39.26 -0.36 -9.27 16 11 C 0.46 10.62 7.34 36.00 0.26 10.88 16 12 O -0.50 -13.11 14.09 -18.75 -0.26 -13.37 16 13 C -0.12 -1.92 5.81 -27.89 -0.16 -2.08 16 14 C -0.10 -1.51 3.79 -26.73 -0.10 -1.62 16 15 C -0.16 -1.75 5.64 -27.89 -0.16 -1.91 16 16 C 0.38 4.51 6.92 -29.03 -0.20 4.31 16 17 O -0.45 -7.16 16.05 6.00 0.10 -7.06 16 18 C -0.22 -1.92 6.13 -91.77 -0.56 -2.48 16 19 C -0.15 -1.22 10.14 -26.73 -0.27 -1.49 16 20 C -0.15 -1.25 10.05 -26.73 -0.27 -1.52 16 21 C -0.14 -3.28 6.90 -25.82 -0.18 -3.45 16 22 C -0.15 -2.91 8.03 -25.82 -0.21 -3.11 16 23 C -0.11 -2.52 6.67 -25.92 -0.17 -2.69 16 24 H 0.28 8.21 5.76 -40.82 -0.24 7.98 16 25 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 28 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 36 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 37 H 0.05 1.20 7.32 -51.93 -0.38 0.82 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.32 7.77 -51.94 -0.40 0.91 16 41 H 0.09 2.00 8.09 -51.93 -0.42 1.58 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -34.51 344.53 -8.58 -43.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.54 Total: 2.78 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.38 Total: -16.25 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.75 Total: -25.78 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.52 Total: -29.70 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.51 -8.58 -43.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.187 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds