Wall clock time and date at job start Tue Mar 31 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 C 1.52999 * 109.47422 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47651 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47438 * 179.97438 * 15 14 13 17 17 O 1.20758 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00152 * 179.97438 * 16 15 14 19 19 C 1.52995 * 117.50037 * 223.62592 * 18 16 15 20 20 C 1.53000 * 117.49642 * 154.99928 * 18 16 15 21 21 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 22 22 C 1.53965 * 87.01865 * 220.04393 * 21 9 7 23 23 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 24 24 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 25 25 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 26 26 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 27 27 H 1.09002 * 109.47129 * 300.00400 * 14 13 11 28 28 H 1.09004 * 109.47160 * 60.00122 * 14 13 11 29 29 H 1.09002 * 109.47145 * 300.00346 * 15 14 13 30 30 H 1.09003 * 109.47237 * 59.99586 * 15 14 13 31 31 H 1.08998 * 115.54649 * 9.33790 * 18 16 15 32 32 H 1.08993 * 117.49727 * 359.97438 * 19 18 16 33 33 H 1.09006 * 117.49588 * 145.02712 * 19 18 16 34 34 H 1.09007 * 117.49651 * 214.98032 * 20 18 16 35 35 H 1.08997 * 117.50138 * 359.97438 * 20 18 16 36 36 H 1.09003 * 113.61463 * 334.56002 * 21 9 7 37 37 H 1.08998 * 113.61742 * 105.46749 * 21 9 7 38 38 H 1.08997 * 113.53497 * 270.81080 * 22 21 9 39 39 H 1.09004 * 113.74018 * 139.93945 * 22 21 9 40 40 H 1.08989 * 113.61692 * 254.53434 * 23 9 7 41 41 H 1.08997 * 113.60746 * 25.35640 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 6 1.0637 -3.1599 4.7587 15 6 0.2212 -3.4293 6.0071 16 6 1.1223 -3.5193 7.2115 17 8 2.3153 -3.3816 7.0847 18 6 0.5346 -3.7799 8.5746 19 6 1.0675 -2.9500 9.7442 20 6 1.4412 -4.4287 9.6224 21 6 2.1425 -3.7147 -0.3463 22 6 0.9944 -4.2328 -1.2317 23 6 0.5566 -2.7668 -1.3871 24 1 -0.4850 -0.8370 -0.0725 25 1 -0.5644 -2.2568 3.6745 26 1 -0.3899 -4.0090 3.4150 27 1 1.7767 -3.9726 4.6196 28 1 1.6029 -2.2203 4.8796 29 1 -0.4921 -2.6170 6.1463 30 1 -0.3177 -4.3691 5.8859 31 1 -0.5217 -4.0483 8.5875 32 1 1.8435 -2.2158 9.5279 33 1 0.3616 -2.6721 10.5269 34 1 0.9812 -5.1236 10.3251 35 1 2.4626 -4.6674 9.3259 36 1 3.0455 -3.4658 -0.9037 37 1 2.3401 -4.3402 0.5242 38 1 0.2739 -4.8489 -0.6937 39 1 1.3300 -4.6894 -2.1628 40 1 -0.5240 -2.6282 -1.3556 41 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835400524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:08 Heat of formation + Delta-G solvation = -113.861860 kcal Electronic energy + Delta-G solvation = -21950.785717 eV Core-core repulsion = 18603.199814 eV Total energy + Delta-G solvation = -3347.585903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47700 -40.92645 -39.11809 -37.12251 -36.13496 -35.32642 -34.53296 -30.44387 -28.04668 -26.62228 -26.20553 -24.53309 -23.36304 -22.98985 -21.44630 -20.34202 -20.18540 -19.39357 -17.96680 -17.51152 -17.25556 -16.98788 -16.42605 -16.08772 -15.76997 -15.70938 -15.43164 -15.01222 -14.77004 -14.40012 -13.91594 -13.61094 -13.30336 -13.13198 -12.96810 -12.77081 -12.47806 -12.46304 -12.35754 -12.26751 -12.03529 -11.94704 -11.84984 -11.80731 -11.56558 -11.45923 -11.23624 -10.92461 -10.61968 -10.50753 -10.15600 -8.62331 -6.40589 0.88280 1.46025 1.51742 1.59923 1.73193 2.10690 2.49802 2.89668 2.94893 3.15866 3.67182 3.80085 3.81300 3.91128 3.93212 3.98275 4.01287 4.05547 4.16510 4.23180 4.44653 4.54132 4.57894 4.68769 4.70305 4.72866 4.77601 4.86620 4.96276 4.96765 5.06402 5.06830 5.08079 5.17619 5.26703 5.34822 5.55353 5.77082 6.08127 6.27876 6.58364 6.60904 7.21167 7.41715 8.75926 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003935 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.981778 B = 7114.157432 C = 7930.619998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.009 4.009 3 Si 1.102 2.898 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.612 4.612 8 H 0.031 0.969 9 C 0.187 3.813 10 O -0.363 6.363 11 C 0.443 3.557 12 O -0.543 6.543 13 C -0.104 4.104 14 C -0.092 4.092 15 C -0.156 4.156 16 C 0.377 3.623 17 O -0.505 6.505 18 C -0.222 4.222 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.146 4.146 22 C -0.119 4.119 23 C -0.110 4.110 24 H 0.272 0.728 25 H 0.114 0.886 26 H 0.134 0.866 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -9.825 14.651 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.924 3.076 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.650 4.650 8 H 0.050 0.950 9 C 0.153 3.847 10 O -0.280 6.280 11 C 0.288 3.712 12 O -0.433 6.433 13 C -0.141 4.141 14 C -0.130 4.130 15 C -0.192 4.192 16 C 0.256 3.744 17 O -0.383 6.383 18 C -0.240 4.240 19 C -0.188 4.188 20 C -0.193 4.193 21 C -0.184 4.184 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.083 0.917 25 H 0.132 0.868 26 H 0.152 0.848 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.503 -8.093 14.608 17.584 hybrid contribution 0.847 -1.326 -0.306 1.603 sum -4.656 -9.419 14.302 17.747 Atomic orbital electron populations 1.70794 1.07107 1.31563 1.45316 1.26975 0.96784 1.05410 0.92047 0.83138 0.74492 0.72504 0.77419 1.19793 1.21662 1.19093 1.22249 0.93489 0.92780 1.56434 0.95027 1.21041 0.88274 0.93518 0.81867 1.86346 1.43640 1.81359 1.16645 1.24317 0.88106 0.72617 0.86202 1.90568 1.18415 1.46978 1.87372 1.21486 0.98183 1.06704 0.87748 1.21072 0.97303 1.01735 0.92920 1.22102 0.98989 1.07442 0.90711 1.24457 0.88628 0.69137 0.92162 1.90426 1.20349 1.38978 1.88503 1.22999 1.02713 1.09316 0.88996 1.23022 1.03218 0.94303 0.98298 1.23024 0.99489 0.96607 1.00145 1.23313 0.98189 0.97662 0.99209 1.22855 0.97142 0.95536 1.00042 1.22901 0.99509 0.96414 0.95933 0.91708 0.86807 0.84784 0.92955 0.94268 0.85322 0.84367 0.82052 0.90312 0.84959 0.85107 0.90235 0.90677 0.93659 0.89583 0.89279 0.92537 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.51 21.45 0.29 -54.24 16 2 C -0.01 -0.55 5.40 84.65 0.46 -0.09 16 3 Si 1.10 52.61 29.90 68.60 2.05 54.66 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.61 -36.26 7.35 25.60 0.19 -36.07 16 8 H 0.03 1.97 7.81 -2.91 -0.02 1.95 16 9 C 0.19 9.69 0.11 -11.01 0.00 9.69 16 10 O -0.36 -18.17 9.10 -51.42 -0.47 -18.63 16 11 C 0.44 20.69 7.34 71.23 0.52 21.22 16 12 O -0.54 -29.63 14.09 21.96 0.31 -29.32 16 13 C -0.10 -3.25 5.81 29.85 0.17 -3.07 16 14 C -0.09 -2.83 3.79 30.59 0.12 -2.71 16 15 C -0.16 -2.90 5.64 29.85 0.17 -2.73 16 16 C 0.38 8.55 6.92 29.10 0.20 8.75 16 17 O -0.51 -16.85 16.05 -1.44 -0.02 -16.87 16 18 C -0.22 -3.22 6.13 -11.54 -0.07 -3.29 16 19 C -0.15 -2.17 10.14 30.60 0.31 -1.86 16 20 C -0.16 -2.25 10.05 30.60 0.31 -1.94 16 21 C -0.15 -6.62 6.90 31.18 0.22 -6.40 16 22 C -0.12 -4.38 8.03 31.18 0.25 -4.13 16 23 C -0.11 -4.92 6.67 31.12 0.21 -4.72 16 24 H 0.27 16.18 5.76 -92.70 -0.53 15.65 16 25 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 26 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.05 1.80 8.06 -2.39 -0.02 1.79 16 28 H 0.04 1.47 8.06 -2.38 -0.02 1.46 16 29 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 1.54 7.89 -2.39 -0.02 1.52 16 36 H 0.07 3.42 8.09 -2.39 -0.02 3.40 16 37 H 0.04 2.07 7.32 -2.39 -0.02 2.06 16 38 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.06 2.52 7.77 -2.39 -0.02 2.50 16 41 H 0.08 3.65 8.09 -2.39 -0.02 3.63 16 Total: -1.00 -80.29 344.53 6.44 -73.85 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.24 Total: 17.93 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.05 Total: -27.37 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.29 Total: -54.24 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -0.18 Total: -64.83 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -80.29 6.44 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.014 kcal (2) G-P(sol) polarization free energy of solvation -80.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds