Wall clock time and date at job start Tue Mar 31 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47150 * 2 1 4 4 C 1.50702 * 109.47536 * 239.99705 * 2 1 3 5 5 H 1.08000 * 119.99963 * 236.86494 * 4 2 1 6 6 C 1.37872 * 119.99597 * 56.86283 * 4 2 1 7 7 N 1.31513 * 120.00425 * 5.81836 * 6 4 2 8 8 Si 1.86800 * 120.00076 * 185.82052 * 6 4 2 9 9 H 1.48502 * 109.47104 * 85.02159 * 8 6 4 10 10 H 1.48495 * 109.47665 * 205.02610 * 8 6 4 11 11 H 1.48509 * 109.47060 * 325.02638 * 8 6 4 12 12 C 1.53000 * 109.47315 * 119.99479 * 2 1 3 13 13 O 1.45201 * 109.47140 * 300.00406 * 12 2 1 14 14 C 1.34229 * 116.99906 * 179.97438 * 13 12 2 15 15 O 1.20826 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99993 * 179.97438 * 14 13 12 17 17 H 1.08993 * 110.36719 * 59.30341 * 16 14 13 18 18 C 1.54607 * 110.41375 * 296.94612 * 16 14 13 19 19 C 1.55980 * 104.46620 * 240.77597 * 18 16 14 20 20 H 1.08994 * 116.08140 * 160.87903 * 19 18 16 21 21 C 1.55967 * 104.30367 * 290.79464 * 19 18 16 22 22 C 1.52171 * 104.87011 * 70.37980 * 21 19 18 23 23 O 1.20760 * 127.32751 * 179.73721 * 22 21 19 24 24 C 1.53516 * 105.34470 * 359.69732 * 22 21 19 25 25 H 1.09004 * 116.44337 * 160.63924 * 24 22 21 26 26 C 1.56930 * 100.84259 * 34.04159 * 24 22 21 27 27 H 1.08997 * 109.47374 * 293.83239 * 1 2 3 28 28 H 1.09007 * 109.47094 * 53.82883 * 1 2 3 29 29 H 1.09000 * 109.47309 * 173.82972 * 1 2 3 30 30 H 1.08999 * 109.46861 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46679 * 299.99440 * 3 2 1 32 32 H 1.08997 * 109.47141 * 59.99628 * 3 2 1 33 33 H 0.97000 * 120.00206 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47543 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47072 * 60.00093 * 12 2 1 36 36 H 1.09002 * 110.43676 * 359.52276 * 18 16 14 37 37 H 1.08995 * 110.43739 * 122.02504 * 18 16 14 38 38 H 1.09002 * 110.35379 * 189.22543 * 21 19 18 39 39 H 1.08996 * 110.35615 * 311.53338 * 21 19 18 40 40 H 1.09003 * 112.08631 * 189.94186 * 26 24 22 41 41 H 1.08999 * 112.15876 * 63.28106 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6944 -1.5581 -1.1320 6 6 1.6468 -0.2784 -2.4816 7 7 0.9349 0.8203 -2.6075 8 14 2.1354 -1.2534 -3.9982 9 1 1.1497 -2.3404 -4.2266 10 1 2.1617 -0.3529 -5.1786 11 1 3.4835 -1.8424 -3.7949 12 6 2.0400 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9162 -0.5469 3.6229 15 8 2.6133 -1.5326 3.6707 16 6 1.4521 0.1103 4.8972 17 1 0.3632 0.1293 4.9395 18 6 2.0210 1.5441 5.0027 19 6 2.8821 1.5269 6.3031 20 1 3.6226 2.3210 6.3980 21 6 1.8381 1.4000 7.4549 22 6 1.2965 -0.0172 7.3366 23 8 0.4648 -0.5439 8.0359 24 6 2.0316 -0.6343 6.1385 25 1 2.0366 -1.7228 6.0803 26 6 3.4345 0.0576 6.2646 27 1 -0.3634 0.4152 0.9400 28 1 -0.3634 0.6066 -0.8296 29 1 -0.3634 -1.0217 -0.1105 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.6640 1.1245 -3.4878 34 1 3.1300 -0.7215 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 2.6433 1.7713 4.1371 37 1 1.2119 2.2690 5.0915 38 1 2.3211 1.5419 8.4217 39 1 1.0355 2.1251 7.3208 40 1 4.0603 -0.1222 5.3904 41 1 3.9447 -0.2128 7.1891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838856764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:48 Heat of formation + Delta-G solvation = -129.478935 kcal Electronic energy + Delta-G solvation = -22551.675236 eV Core-core repulsion = 19203.412125 eV Total energy + Delta-G solvation = -3348.263110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40970 -39.60960 -37.74539 -36.49219 -34.86687 -31.42577 -30.81819 -29.14661 -27.40296 -25.82863 -25.65235 -25.14226 -23.16517 -20.62473 -20.26906 -18.87004 -18.74014 -17.48704 -16.78474 -16.07142 -15.99917 -15.61967 -15.48535 -14.92566 -14.43572 -14.29606 -13.85594 -13.13553 -13.07052 -12.89003 -12.82244 -12.08179 -11.85984 -11.70636 -11.61828 -11.43203 -11.35612 -11.20158 -11.02128 -10.96513 -10.95265 -10.72545 -10.44231 -10.23705 -10.04566 -9.92604 -9.63800 -9.43787 -9.32018 -8.78981 -8.38975 -6.04861 -4.15243 1.62245 2.52846 3.11685 3.26989 3.33540 3.37174 3.78077 4.05584 4.08956 4.34158 4.37228 4.63207 4.75242 4.87234 4.99329 5.13280 5.22105 5.29993 5.34526 5.40751 5.52905 5.69310 5.71400 5.80785 5.90198 5.92376 6.05168 6.07289 6.43338 6.72547 6.95734 7.02820 7.09339 7.11837 7.21577 7.37367 7.59566 7.68413 8.00693 8.11305 8.20788 8.36331 8.84310 9.50094 10.96969 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003682 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.097210 B = 7602.937791 C = 7715.153715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 C -0.128 4.128 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.084 3.916 13 O -0.345 6.345 14 C 0.464 3.536 15 O -0.515 6.515 16 C -0.081 4.081 17 H 0.110 0.890 18 C -0.115 4.115 19 C -0.097 4.097 20 H 0.118 0.882 21 C -0.178 4.178 22 C 0.371 3.629 23 O -0.440 6.440 24 C -0.137 4.137 25 H 0.126 0.874 26 C -0.120 4.120 27 H 0.017 0.983 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 3.981 16.764 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 C -0.186 4.186 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.132 4.132 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.012 3.988 13 O -0.261 6.261 14 C 0.306 3.694 15 O -0.404 6.404 16 C -0.100 4.100 17 H 0.128 0.872 18 C -0.152 4.152 19 C -0.115 4.115 20 H 0.136 0.864 21 C -0.215 4.215 22 C 0.245 3.755 23 O -0.312 6.312 24 C -0.156 4.156 25 H 0.144 0.856 26 C -0.158 4.158 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.327 3.532 16.937 17.457 hybrid contribution 0.305 -0.749 -1.045 1.321 sum 2.632 2.783 15.892 16.347 Atomic orbital electron populations 1.21743 0.97298 0.99814 0.99686 1.18248 0.93390 0.93091 0.88316 1.21780 0.98033 0.98148 1.00605 1.20916 1.29760 1.14727 0.89875 0.92522 1.24844 0.94887 0.94748 0.98722 1.69847 1.37484 1.21163 1.23387 0.86575 0.79013 0.79939 0.82269 1.20545 1.21202 1.19956 1.23680 0.98160 0.95842 0.81154 1.86517 1.68976 1.55801 1.14802 1.23122 0.77720 0.82343 0.86177 1.90624 1.35834 1.25705 1.88277 1.21898 1.02515 0.96361 0.89253 0.87225 1.22732 1.00107 0.93685 0.98711 1.23631 0.96372 0.97954 0.93543 0.86402 1.23189 1.00608 0.96676 1.01041 1.25532 0.78054 0.89771 0.82124 1.90419 1.26783 1.69193 1.44770 1.24130 0.96783 1.01708 0.92948 0.85640 1.23625 0.95115 0.93814 1.03217 0.96428 0.90136 0.95591 0.95878 0.89747 0.96526 0.92888 0.92526 0.92529 0.89632 0.89677 0.88189 0.87966 0.89262 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.06 37.15 0.30 -2.73 16 2 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 3 C -0.13 -2.99 8.14 37.16 0.30 -2.69 16 4 C -0.51 -13.60 8.01 -34.44 -0.28 -13.88 16 5 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 6 C 0.07 1.85 5.13 -17.82 -0.09 1.76 16 7 N -0.88 -23.66 9.46 55.43 0.52 -23.13 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.08 1.83 4.26 37.16 0.16 1.98 16 13 O -0.35 -6.59 8.77 -39.25 -0.34 -6.93 16 14 C 0.46 7.71 6.78 36.01 0.24 7.96 16 15 O -0.51 -9.72 15.37 -18.75 -0.29 -10.01 16 16 C -0.08 -0.98 2.81 -89.36 -0.25 -1.23 16 17 H 0.11 1.25 8.04 -51.93 -0.42 0.83 16 18 C -0.11 -1.10 5.85 -24.29 -0.14 -1.24 16 19 C -0.10 -0.71 5.25 -85.26 -0.45 -1.16 16 20 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.18 -1.28 6.10 -25.57 -0.16 -1.44 16 22 C 0.37 3.96 7.14 -26.89 -0.19 3.76 16 23 O -0.44 -6.17 17.99 6.00 0.11 -6.07 16 24 C -0.14 -1.52 4.02 -86.66 -0.35 -1.87 16 25 H 0.13 1.55 7.81 -51.93 -0.41 1.14 16 26 C -0.12 -1.10 6.32 -22.43 -0.14 -1.24 16 27 H 0.02 0.37 7.50 -51.93 -0.39 -0.02 16 28 H 0.08 2.06 6.25 -51.92 -0.32 1.74 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 2.16 6.11 -51.93 -0.32 1.84 16 32 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 37 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.64 7.84 -51.93 -0.41 0.24 16 40 H 0.09 0.96 7.72 -51.93 -0.40 0.56 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -29.53 328.42 -7.57 -37.10 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.37 Total: -1.11 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.13 Total: -10.43 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.52 Total: -23.13 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.52 Total: -23.01 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.53 -7.57 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838856764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.377 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds