Wall clock time and date at job start Tue Mar 31 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47150 * 2 1 4 4 C 1.50702 * 109.47536 * 239.99705 * 2 1 3 5 5 H 1.08000 * 119.99963 * 236.86494 * 4 2 1 6 6 C 1.37872 * 119.99597 * 56.86283 * 4 2 1 7 7 N 1.31513 * 120.00425 * 5.81836 * 6 4 2 8 8 Si 1.86800 * 120.00076 * 185.82052 * 6 4 2 9 9 H 1.48502 * 109.47104 * 85.02159 * 8 6 4 10 10 H 1.48495 * 109.47665 * 205.02610 * 8 6 4 11 11 H 1.48509 * 109.47060 * 325.02638 * 8 6 4 12 12 C 1.53000 * 109.47315 * 119.99479 * 2 1 3 13 13 O 1.45201 * 109.47140 * 300.00406 * 12 2 1 14 14 C 1.34229 * 116.99906 * 179.97438 * 13 12 2 15 15 O 1.20826 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99993 * 179.97438 * 14 13 12 17 17 H 1.08993 * 110.36719 * 59.30341 * 16 14 13 18 18 C 1.54607 * 110.41375 * 296.94612 * 16 14 13 19 19 C 1.55980 * 104.46620 * 240.77597 * 18 16 14 20 20 H 1.08994 * 116.08140 * 160.87903 * 19 18 16 21 21 C 1.55967 * 104.30367 * 290.79464 * 19 18 16 22 22 C 1.52171 * 104.87011 * 70.37980 * 21 19 18 23 23 O 1.20760 * 127.32751 * 179.73721 * 22 21 19 24 24 C 1.53516 * 105.34470 * 359.69732 * 22 21 19 25 25 H 1.09004 * 116.44337 * 160.63924 * 24 22 21 26 26 C 1.56930 * 100.84259 * 34.04159 * 24 22 21 27 27 H 1.08997 * 109.47374 * 293.83239 * 1 2 3 28 28 H 1.09007 * 109.47094 * 53.82883 * 1 2 3 29 29 H 1.09000 * 109.47309 * 173.82972 * 1 2 3 30 30 H 1.08999 * 109.46861 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46679 * 299.99440 * 3 2 1 32 32 H 1.08997 * 109.47141 * 59.99628 * 3 2 1 33 33 H 0.97000 * 120.00206 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47543 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47072 * 60.00093 * 12 2 1 36 36 H 1.09002 * 110.43676 * 359.52276 * 18 16 14 37 37 H 1.08995 * 110.43739 * 122.02504 * 18 16 14 38 38 H 1.09002 * 110.35379 * 189.22543 * 21 19 18 39 39 H 1.08996 * 110.35615 * 311.53338 * 21 19 18 40 40 H 1.09003 * 112.08631 * 189.94186 * 26 24 22 41 41 H 1.08999 * 112.15876 * 63.28106 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6944 -1.5581 -1.1320 6 6 1.6468 -0.2784 -2.4816 7 7 0.9349 0.8203 -2.6075 8 14 2.1354 -1.2534 -3.9982 9 1 1.1497 -2.3404 -4.2266 10 1 2.1617 -0.3529 -5.1786 11 1 3.4835 -1.8424 -3.7949 12 6 2.0400 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9162 -0.5469 3.6229 15 8 2.6133 -1.5326 3.6707 16 6 1.4521 0.1103 4.8972 17 1 0.3632 0.1293 4.9395 18 6 2.0210 1.5441 5.0027 19 6 2.8821 1.5269 6.3031 20 1 3.6226 2.3210 6.3980 21 6 1.8381 1.4000 7.4549 22 6 1.2965 -0.0172 7.3366 23 8 0.4648 -0.5439 8.0359 24 6 2.0316 -0.6343 6.1385 25 1 2.0366 -1.7228 6.0803 26 6 3.4345 0.0576 6.2646 27 1 -0.3634 0.4152 0.9400 28 1 -0.3634 0.6066 -0.8296 29 1 -0.3634 -1.0217 -0.1105 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.6640 1.1245 -3.4878 34 1 3.1300 -0.7215 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 2.6433 1.7713 4.1371 37 1 1.2119 2.2690 5.0915 38 1 2.3211 1.5419 8.4217 39 1 1.0355 2.1251 7.3208 40 1 4.0603 -0.1222 5.3904 41 1 3.9447 -0.2128 7.1891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838856764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:47 Heat of formation + Delta-G solvation = -144.359190 kcal Electronic energy + Delta-G solvation = -22552.320492 eV Core-core repulsion = 19203.412125 eV Total energy + Delta-G solvation = -3348.908366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.38428 -40.90666 -38.79113 -38.05346 -36.60686 -33.31218 -31.80193 -29.93431 -28.18697 -27.57790 -27.53504 -27.06024 -24.31665 -21.66824 -21.17732 -20.70919 -19.59097 -18.76477 -17.84245 -17.76892 -17.47551 -16.87812 -16.65504 -16.48751 -15.65440 -15.27170 -14.92530 -14.73887 -14.49418 -14.42757 -13.82278 -13.60417 -13.37144 -13.15488 -12.82944 -12.69511 -12.64061 -12.51675 -12.34862 -12.25682 -12.21477 -12.14286 -11.83490 -11.73305 -11.64007 -11.41160 -11.27875 -11.13385 -10.74699 -10.46026 -10.39803 -8.05938 -6.22616 0.77624 1.17933 1.42775 1.44746 1.52411 1.80223 2.44800 2.97686 3.18003 3.21020 3.33370 3.59578 3.85815 3.93580 4.04060 4.06049 4.24658 4.26609 4.31426 4.38870 4.60611 4.70192 4.79346 4.83149 4.85898 4.98335 5.03274 5.04790 5.09711 5.17749 5.18274 5.23393 5.27384 5.36830 5.59596 5.63928 5.66589 6.06259 6.17615 6.36213 6.40448 6.74026 6.83130 7.45044 8.94158 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003682 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.097210 B = 7602.937791 C = 7715.153715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.060 3.940 3 C -0.116 4.116 4 C -0.537 4.537 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.097 3.903 13 O -0.349 6.349 14 C 0.461 3.539 15 O -0.542 6.542 16 C -0.078 4.078 17 H 0.118 0.882 18 C -0.116 4.116 19 C -0.076 4.076 20 H 0.151 0.849 21 C -0.165 4.165 22 C 0.376 3.624 23 O -0.480 6.480 24 C -0.150 4.150 25 H 0.102 0.898 26 C -0.121 4.121 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 5.560 18.219 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 C -0.173 4.173 4 C -0.575 4.575 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.024 3.976 13 O -0.264 6.264 14 C 0.306 3.694 15 O -0.432 6.432 16 C -0.097 4.097 17 H 0.136 0.864 18 C -0.154 4.154 19 C -0.093 4.093 20 H 0.168 0.832 21 C -0.202 4.202 22 C 0.253 3.747 23 O -0.354 6.354 24 C -0.169 4.169 25 H 0.120 0.880 26 C -0.158 4.158 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.751 5.121 18.397 19.293 hybrid contribution 0.184 -1.292 -1.474 1.968 sum 2.934 3.829 16.923 17.597 Atomic orbital electron populations 1.21595 0.97160 0.98956 0.99700 1.18273 0.93511 0.93496 0.88709 1.21609 0.97756 0.97622 1.00355 1.21186 1.30099 1.14905 0.91317 0.93407 1.25473 0.94963 0.95527 1.00996 1.69952 1.37817 1.21850 1.23895 0.85708 0.78606 0.78738 0.79376 1.20375 1.20638 1.19834 1.23226 0.97542 0.95050 0.81802 1.86505 1.69207 1.55734 1.15001 1.24078 0.76873 0.81976 0.86492 1.90612 1.37132 1.26999 1.88466 1.22063 1.03047 0.97951 0.86688 0.86401 1.22850 1.01046 0.91868 0.99615 1.23696 0.96291 0.97264 0.92092 0.83172 1.23195 1.01005 0.93874 1.02163 1.25878 0.76781 0.91225 0.80794 1.90413 1.28554 1.70428 1.46027 1.24186 0.98755 1.00761 0.93197 0.87972 1.23655 0.93658 0.95206 1.03288 0.94682 0.92087 0.96388 0.96081 0.91947 0.94619 0.92828 0.93150 0.93665 0.90925 0.87353 0.85580 0.85949 0.91270 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.06 71.98 0.58 -4.96 16 2 C 0.06 2.93 0.58 -52.93 -0.03 2.89 16 3 C -0.12 -5.39 8.14 71.98 0.59 -4.80 16 4 C -0.54 -28.71 8.01 25.60 0.20 -28.51 16 5 H 0.05 2.57 7.75 -2.91 -0.02 2.55 16 6 C 0.03 1.63 5.13 84.65 0.43 2.07 16 7 N -0.90 -48.38 9.46 21.45 0.20 -48.18 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.10 4.26 4.26 71.98 0.31 4.57 16 13 O -0.35 -13.20 8.77 -51.41 -0.45 -13.65 16 14 C 0.46 15.33 6.78 71.24 0.48 15.82 16 15 O -0.54 -20.94 15.37 21.96 0.34 -20.60 16 16 C -0.08 -1.80 2.81 -9.98 -0.03 -1.83 16 17 H 0.12 2.52 8.04 -2.39 -0.02 2.50 16 18 C -0.12 -1.89 5.85 32.17 0.19 -1.70 16 19 C -0.08 -0.80 5.25 -7.32 -0.04 -0.84 16 20 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 21 C -0.17 -1.67 6.10 31.35 0.19 -1.47 16 22 C 0.38 7.29 7.14 30.49 0.22 7.51 16 23 O -0.48 -13.02 17.99 -1.45 -0.03 -13.05 16 24 C -0.15 -3.22 4.02 -8.23 -0.03 -3.25 16 25 H 0.10 2.64 7.81 -2.38 -0.02 2.62 16 26 C -0.12 -1.97 6.32 33.38 0.21 -1.76 16 27 H 0.03 1.49 7.50 -2.39 -0.02 1.47 16 28 H 0.06 3.14 6.25 -2.38 -0.01 3.12 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 3.19 6.11 -2.39 -0.01 3.17 16 32 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 33 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.05 2.24 8.13 -2.39 -0.02 2.22 16 35 H 0.04 2.05 8.13 -2.38 -0.02 2.03 16 36 H 0.07 1.41 7.72 -2.39 -0.02 1.40 16 37 H 0.11 1.30 7.85 -2.39 -0.02 1.28 16 38 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 0.90 7.84 -2.39 -0.02 0.88 16 40 H 0.07 1.43 7.72 -2.39 -0.02 1.41 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.83 328.42 6.38 -58.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.01 Total: 8.86 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 3.27 Total: -16.26 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.20 Total: -48.18 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.14 Total: -47.30 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -64.83 6.38 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838856764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.910 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds