Wall clock time and date at job start Tue Mar 31 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99882 * 2 1 4 4 C 1.53004 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47210 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47458 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47458 * 179.97438 * 6 5 4 8 8 O 1.42907 * 109.47187 * 180.02562 * 7 6 5 9 9 C 1.35900 * 117.00011 * 180.02562 * 8 7 6 10 10 C 1.38827 * 120.02115 * 359.72410 * 9 8 7 11 11 C 1.38189 * 120.07765 * 179.72294 * 10 9 8 12 12 C 1.38149 * 120.12438 * 0.55361 * 11 10 9 13 13 C 1.38890 * 120.03979 * 359.72018 * 12 11 10 14 14 O 1.35754 * 120.03567 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99505 * 174.48878 * 14 13 12 16 16 H 1.08001 * 120.00214 * 5.05661 * 15 14 13 17 17 C 1.38659 * 119.99788 * 185.05604 * 15 14 13 18 18 N 1.31554 * 119.99670 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46852 * 60.00312 * 19 17 15 21 21 H 1.48502 * 109.47190 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47269 * 300.00367 * 19 17 15 23 23 C 1.38571 * 120.01894 * 179.97438 * 9 8 7 24 24 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47444 * 300.00066 * 1 2 3 26 26 H 1.08997 * 109.46894 * 59.99898 * 1 2 3 27 27 H 1.09002 * 109.47432 * 60.00077 * 3 2 1 28 28 H 1.09005 * 109.47380 * 299.99894 * 3 2 1 29 29 H 1.09002 * 109.46794 * 60.00696 * 4 3 2 30 30 H 1.08996 * 109.47102 * 300.00204 * 4 3 2 31 31 H 1.09002 * 109.47372 * 60.00420 * 5 4 3 32 32 H 1.09005 * 109.47356 * 300.00288 * 5 4 3 33 33 H 1.09002 * 109.47124 * 60.00048 * 6 5 4 34 34 H 1.09005 * 109.46887 * 300.00348 * 6 5 4 35 35 H 1.09002 * 109.47372 * 60.00192 * 7 6 5 36 36 H 1.08996 * 109.47272 * 299.99894 * 7 6 5 37 37 H 1.08005 * 119.95663 * 359.97438 * 10 9 8 38 38 H 1.08008 * 119.93521 * 180.25076 * 11 10 9 39 39 H 1.08003 * 119.97608 * 179.69786 * 12 11 10 40 40 H 0.97005 * 119.99481 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.06077 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4616 0.0000 7 6 6.3053 3.8593 -0.0013 8 8 7.7299 3.7465 -0.0019 9 6 8.4405 4.9049 -0.0025 10 6 7.7791 6.1255 -0.0083 11 6 8.5005 7.3041 -0.0032 12 6 9.8817 7.2717 -0.0038 13 6 10.5485 6.0533 -0.0037 14 8 11.9057 6.0216 -0.0048 15 6 12.4897 4.8117 0.1107 16 1 11.8836 3.9178 0.1165 17 6 13.8684 4.7153 0.2221 18 7 14.6066 5.8041 0.2156 19 14 14.6774 3.0393 0.3829 20 1 14.3557 2.2177 -0.8116 21 1 16.1492 3.2079 0.4865 22 1 14.1705 2.3598 1.6022 23 6 9.8257 4.8684 -0.0026 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8567 0.6439 0.8908 31 1 3.8359 3.1238 0.8896 32 1 3.8364 3.1228 -0.8904 33 1 6.0046 1.9203 -0.8898 34 1 6.0046 1.9211 0.8902 35 1 5.9837 4.4011 0.8883 36 1 5.9836 4.3994 -0.8917 37 1 6.6995 6.1539 -0.0128 38 1 7.9836 8.2525 -0.0036 39 1 10.4431 8.1943 -0.0047 40 1 15.5711 5.7366 0.2939 41 1 10.3419 3.9197 -0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:16 Heat of formation + Delta-G solvation = -106.311441 kcal Electronic energy + Delta-G solvation = -20497.813702 eV Core-core repulsion = 17150.555210 eV Total energy + Delta-G solvation = -3347.258492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.61099 -38.43959 -38.10770 -36.00701 -35.18428 -32.25148 -31.29571 -29.40869 -28.59196 -27.22462 -25.38448 -25.29121 -22.54023 -21.89623 -21.27747 -20.70121 -18.22509 -17.59384 -16.76399 -16.68021 -16.01723 -15.69207 -15.49387 -15.18220 -14.94784 -14.73644 -14.27914 -13.63219 -13.59061 -13.17314 -13.08534 -12.83145 -12.47625 -12.27296 -12.08512 -11.76500 -11.58779 -11.31851 -11.28803 -11.23700 -11.02950 -10.93074 -10.79181 -10.53495 -10.34875 -10.20893 -10.06003 -9.43018 -8.81815 -7.69182 -7.23969 -6.44197 -4.03542 2.23332 2.35690 3.16026 3.17491 3.19745 3.24984 3.64236 3.99169 4.54822 4.57770 4.64935 4.75916 4.84777 4.92827 4.95523 5.04484 5.10265 5.21546 5.23721 5.24265 5.26613 5.32780 5.48238 5.53324 5.60167 5.69602 5.78739 5.84378 6.02564 6.06878 6.14432 6.29502 6.43447 6.68957 6.76497 7.04095 7.10858 7.23964 7.43823 7.58973 8.01241 8.08141 9.01421 9.69227 10.73374 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002570 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.357126 B =10892.001946 C =12063.353809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.119 4.119 7 C 0.063 3.937 8 O -0.321 6.321 9 C 0.167 3.833 10 C -0.298 4.298 11 C -0.044 4.044 12 C -0.221 4.221 13 C 0.183 3.817 14 O -0.171 6.171 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.265 4.265 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.243 -6.671 -0.229 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.012 4.012 8 O -0.235 6.235 9 C 0.122 3.878 10 C -0.317 4.317 11 C -0.063 4.063 12 C -0.241 4.241 13 C 0.129 3.871 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.164 4.164 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.286 4.286 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.619 -6.798 -0.232 23.619 hybrid contribution -0.070 -0.407 0.079 0.420 sum -22.689 -7.205 -0.153 23.806 Atomic orbital electron populations 1.22738 0.81037 1.02773 0.99968 1.87879 1.19722 1.28272 1.95429 1.22590 0.94338 0.84531 1.00206 1.21503 0.92684 0.97613 1.03795 1.21385 0.94457 0.96554 1.02650 1.21507 0.93988 0.96173 1.03944 1.22651 0.79596 0.97861 1.01139 1.86000 1.18483 1.29940 1.89057 1.18646 0.90746 0.83984 0.94405 1.20638 0.98694 0.92204 1.20198 1.20402 0.92936 0.96736 0.96215 1.20154 0.93622 0.96018 1.14268 1.19029 0.84752 0.92395 0.90965 1.84002 1.12896 1.32634 1.77852 1.21336 0.90521 0.82783 1.52254 0.88892 1.25303 0.95263 0.99481 0.96397 1.70035 1.06114 1.27836 1.45666 0.85766 0.78139 0.80156 0.79318 1.19424 1.20280 1.19427 1.20331 0.90657 0.99650 1.17915 0.89628 0.94078 0.94087 0.93273 0.93269 0.90840 0.90829 0.91437 0.91443 0.90714 0.90704 0.92416 0.92427 0.87157 0.86785 0.86374 0.91940 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.69 10.70 -35.23 -0.38 -4.07 16 3 C 0.06 0.46 5.94 37.16 0.22 0.68 16 4 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 5 C -0.11 -0.87 5.21 -26.73 -0.14 -1.01 16 6 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 7 C 0.06 0.81 4.74 37.16 0.18 0.99 16 8 O -0.32 -5.77 10.13 -19.43 -0.20 -5.97 16 9 C 0.17 3.38 6.68 -39.24 -0.26 3.12 16 10 C -0.30 -5.39 9.04 -39.38 -0.36 -5.74 16 11 C -0.04 -0.81 10.03 -39.63 -0.40 -1.21 16 12 C -0.22 -4.79 9.99 -39.37 -0.39 -5.18 16 13 C 0.18 4.58 6.64 -39.13 -0.26 4.32 16 14 O -0.17 -4.96 9.76 0.02 0.00 -4.96 16 15 C -0.39 -11.19 9.49 30.89 0.29 -10.90 16 16 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 19 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.27 -6.20 9.10 -39.25 -0.36 -6.56 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.69 7.67 -51.93 -0.40 0.30 16 36 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 37 H 0.11 1.65 6.29 -52.48 -0.33 1.32 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.13 3.19 5.64 -52.48 -0.30 2.90 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -32.02 346.12 -6.71 -38.72 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.33 Total: 1.53 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.76 Total: -21.64 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.76 Total: -24.65 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.57 Total: -15.00 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.02 -6.71 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.589 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds