Wall clock time and date at job start Tue Mar 31 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99882 * 2 1 4 4 C 1.53004 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47210 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47458 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47458 * 179.97438 * 6 5 4 8 8 O 1.42907 * 109.47187 * 180.02562 * 7 6 5 9 9 C 1.35900 * 117.00011 * 180.02562 * 8 7 6 10 10 C 1.38827 * 120.02115 * 359.72410 * 9 8 7 11 11 C 1.38189 * 120.07765 * 179.72294 * 10 9 8 12 12 C 1.38149 * 120.12438 * 0.55361 * 11 10 9 13 13 C 1.38890 * 120.03979 * 359.72018 * 12 11 10 14 14 O 1.35754 * 120.03567 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99505 * 174.48878 * 14 13 12 16 16 H 1.08001 * 120.00214 * 5.05661 * 15 14 13 17 17 C 1.38659 * 119.99788 * 185.05604 * 15 14 13 18 18 N 1.31554 * 119.99670 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46852 * 60.00312 * 19 17 15 21 21 H 1.48502 * 109.47190 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47269 * 300.00367 * 19 17 15 23 23 C 1.38571 * 120.01894 * 179.97438 * 9 8 7 24 24 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47444 * 300.00066 * 1 2 3 26 26 H 1.08997 * 109.46894 * 59.99898 * 1 2 3 27 27 H 1.09002 * 109.47432 * 60.00077 * 3 2 1 28 28 H 1.09005 * 109.47380 * 299.99894 * 3 2 1 29 29 H 1.09002 * 109.46794 * 60.00696 * 4 3 2 30 30 H 1.08996 * 109.47102 * 300.00204 * 4 3 2 31 31 H 1.09002 * 109.47372 * 60.00420 * 5 4 3 32 32 H 1.09005 * 109.47356 * 300.00288 * 5 4 3 33 33 H 1.09002 * 109.47124 * 60.00048 * 6 5 4 34 34 H 1.09005 * 109.46887 * 300.00348 * 6 5 4 35 35 H 1.09002 * 109.47372 * 60.00192 * 7 6 5 36 36 H 1.08996 * 109.47272 * 299.99894 * 7 6 5 37 37 H 1.08005 * 119.95663 * 359.97438 * 10 9 8 38 38 H 1.08008 * 119.93521 * 180.25076 * 11 10 9 39 39 H 1.08003 * 119.97608 * 179.69786 * 12 11 10 40 40 H 0.97005 * 119.99481 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.06077 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4616 0.0000 7 6 6.3053 3.8593 -0.0013 8 8 7.7299 3.7465 -0.0019 9 6 8.4405 4.9049 -0.0025 10 6 7.7791 6.1255 -0.0083 11 6 8.5005 7.3041 -0.0032 12 6 9.8817 7.2717 -0.0038 13 6 10.5485 6.0533 -0.0037 14 8 11.9057 6.0216 -0.0048 15 6 12.4897 4.8117 0.1107 16 1 11.8836 3.9178 0.1165 17 6 13.8684 4.7153 0.2221 18 7 14.6066 5.8041 0.2156 19 14 14.6774 3.0393 0.3829 20 1 14.3557 2.2177 -0.8116 21 1 16.1492 3.2079 0.4865 22 1 14.1705 2.3598 1.6022 23 6 9.8257 4.8684 -0.0026 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8567 0.6439 0.8908 31 1 3.8359 3.1238 0.8896 32 1 3.8364 3.1228 -0.8904 33 1 6.0046 1.9203 -0.8898 34 1 6.0046 1.9211 0.8902 35 1 5.9837 4.4011 0.8883 36 1 5.9836 4.3994 -0.8917 37 1 6.6995 6.1539 -0.0128 38 1 7.9836 8.2525 -0.0036 39 1 10.4431 8.1943 -0.0047 40 1 15.5711 5.7366 0.2939 41 1 10.3419 3.9197 -0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:15 Heat of formation + Delta-G solvation = -126.374299 kcal Electronic energy + Delta-G solvation = -20498.683693 eV Core-core repulsion = 17150.555210 eV Total energy + Delta-G solvation = -3348.128483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19728 -39.84470 -38.96931 -37.46549 -36.15143 -34.28545 -32.25641 -30.88146 -30.25411 -27.85169 -27.35115 -26.11644 -23.69331 -23.35832 -22.20339 -21.95664 -19.95415 -19.41268 -17.48110 -17.47644 -17.14676 -16.90967 -16.83624 -16.72227 -16.05685 -15.92803 -15.70245 -15.32485 -15.09999 -14.59897 -14.13492 -14.02764 -13.59892 -13.52751 -13.22848 -13.05889 -12.73702 -12.62657 -12.42503 -12.26718 -12.18463 -12.13139 -11.91559 -11.79468 -11.67281 -11.40485 -11.34437 -10.79519 -10.61035 -9.38476 -8.95085 -8.49365 -6.18506 0.57966 0.68156 1.33967 1.44827 1.50182 2.15587 2.22915 2.79821 2.87475 3.13464 3.48785 3.90167 3.92585 4.02371 4.07445 4.12950 4.26360 4.35196 4.42943 4.46111 4.48395 4.49218 4.55283 4.58043 4.65045 4.74993 4.84886 4.86498 4.90970 4.96195 5.02298 5.09671 5.14412 5.33194 5.38228 5.43801 5.61401 5.65230 5.95460 6.00895 6.25025 6.59845 6.94912 7.72205 8.72923 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002570 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.357126 B =10892.001946 C =12063.353809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.058 3.942 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.115 4.115 7 C 0.052 3.948 8 O -0.337 6.337 9 C 0.167 3.833 10 C -0.274 4.274 11 C -0.028 4.028 12 C -0.238 4.238 13 C 0.149 3.851 14 O -0.223 6.223 15 C -0.417 4.417 16 H 0.097 0.903 17 C -0.019 4.019 18 N -0.916 5.916 19 Si 1.017 2.983 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.288 4.288 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.274 0.726 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.733 -6.848 -0.161 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.018 4.018 4 C -0.155 4.155 5 C -0.140 4.140 6 C -0.152 4.152 7 C -0.022 4.022 8 O -0.251 6.251 9 C 0.122 3.878 10 C -0.293 4.293 11 C -0.046 4.046 12 C -0.257 4.257 13 C 0.098 3.902 14 O -0.129 6.129 15 C -0.493 4.493 16 H 0.114 0.886 17 C -0.217 4.217 18 N -0.553 5.553 19 Si 0.836 3.164 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.308 4.308 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.185 -6.975 -0.168 27.098 hybrid contribution 0.592 -0.312 0.045 0.671 sum -25.592 -7.287 -0.123 26.610 Atomic orbital electron populations 1.22908 0.79587 1.03690 1.00888 1.87836 1.21468 1.29366 1.95638 1.22648 0.93799 0.84192 1.01186 1.21465 0.93302 0.97651 1.03053 1.21308 0.92170 0.96603 1.03915 1.21511 0.95672 0.94666 1.03388 1.23092 0.76617 0.99878 1.02659 1.86004 1.21390 1.29210 1.88523 1.18694 0.89870 0.85806 0.93449 1.21195 1.00992 0.90816 1.16271 1.20955 0.91320 0.99131 0.93179 1.20470 0.95454 0.94902 1.14868 1.19591 0.83926 0.94372 0.92353 1.83961 1.15069 1.32997 1.80855 1.21748 0.91347 0.83189 1.53049 0.88591 1.26571 0.95446 1.04040 0.95660 1.70167 1.06507 1.30508 1.48143 0.84674 0.77229 0.74654 0.79820 1.18300 1.19115 1.18361 1.20337 0.92583 0.98435 1.19401 0.88868 0.93134 0.93138 0.92255 0.92239 0.91632 0.91635 0.90145 0.90134 0.91364 0.91379 0.90744 0.90715 0.82526 0.81795 0.86226 0.91659 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.28 10.70 -148.98 -1.59 -8.88 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.12 -1.63 5.58 30.59 0.17 -1.46 16 5 C -0.10 -1.25 5.21 30.59 0.16 -1.09 16 6 C -0.11 -2.07 5.58 30.59 0.17 -1.90 16 7 C 0.05 1.15 4.74 71.98 0.34 1.49 16 8 O -0.34 -11.50 10.13 -92.42 -0.94 -12.44 16 9 C 0.17 6.51 6.68 22.49 0.15 6.66 16 10 C -0.27 -8.72 9.04 22.40 0.20 -8.52 16 11 C -0.03 -0.92 10.03 22.24 0.22 -0.70 16 12 C -0.24 -10.22 9.99 22.41 0.22 -9.99 16 13 C 0.15 7.73 6.64 22.56 0.15 7.88 16 14 O -0.22 -13.80 9.76 -22.85 -0.22 -14.02 16 15 C -0.42 -25.22 9.49 67.92 0.64 -24.58 16 16 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 17 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 18 N -0.92 -56.78 13.67 21.61 0.30 -56.48 16 19 Si 1.02 44.12 29.55 68.60 2.03 46.15 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.29 -13.81 9.10 22.48 0.20 -13.60 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.43 7.67 -2.39 -0.02 1.41 16 36 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 37 H 0.16 3.60 6.29 -2.91 -0.02 3.58 16 38 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.11 5.80 5.64 -2.91 -0.02 5.78 16 Total: -1.00 -74.81 346.12 5.35 -69.45 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.00 Total: 19.97 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 4.78 Total: -43.76 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.30 Total: -56.48 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.75 Total: -35.33 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -74.81 5.35 -69.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.920 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds