Wall clock time and date at job start Tue Mar 31 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46724 * 65.00143 * 12 11 10 14 14 C 1.34238 * 116.99457 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.46098 * 60.02567 * 16 14 13 18 18 C 1.53039 * 109.45544 * 300.07715 * 16 14 13 19 19 C 1.53411 * 109.54424 * 239.97999 * 18 16 14 20 20 H 1.09001 * 111.31930 * 177.41872 * 19 18 16 21 21 C 1.52148 * 107.84521 * 55.70627 * 19 18 16 22 22 C 1.33095 * 113.75993 * 301.71750 * 21 19 18 23 23 C 1.52149 * 113.75607 * 0.02562 * 22 21 19 24 24 H 1.09005 * 111.33565 * 179.97438 * 23 22 21 25 25 C 1.53491 * 107.68027 * 301.58601 * 23 22 21 26 26 C 1.53019 * 109.53615 * 55.82464 * 25 23 22 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 31 31 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 32 32 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 33 33 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 34 34 H 1.08995 * 109.46016 * 359.97438 * 18 16 14 35 35 H 1.08997 * 109.45788 * 119.96039 * 18 16 14 36 36 H 1.08007 * 123.11981 * 121.74157 * 21 19 18 37 37 H 1.08001 * 123.12120 * 180.02562 * 22 21 19 38 38 H 1.09006 * 109.46104 * 175.83960 * 25 23 22 39 39 H 1.08993 * 109.46540 * 295.79724 * 25 23 22 40 40 H 1.09005 * 109.46331 * 120.02121 * 26 25 23 41 41 H 1.09010 * 109.46004 * 239.99004 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2406 14 6 4.3946 -6.7761 1.3995 15 8 4.6283 -7.5833 0.5314 16 6 5.2185 -6.7667 2.6614 17 1 4.5701 -6.9414 3.5198 18 6 5.9064 -5.4078 2.8108 19 6 7.4278 -5.6029 2.8375 20 1 7.9489 -4.6474 2.8977 21 6 7.8237 -6.3549 1.5754 22 6 7.2254 -7.5367 1.4455 23 6 6.2780 -7.8729 2.5876 24 1 5.8103 -8.8466 2.4413 25 6 7.0905 -7.8494 3.8895 26 6 7.7783 -6.4907 4.0390 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 0.9453 -4.9821 0.8913 31 1 0.9447 -4.9827 -0.8887 32 1 2.1822 -6.9374 -0.0887 33 1 3.3210 -5.7957 -0.8419 34 1 5.6373 -4.7700 1.9689 35 1 5.5843 -4.9380 3.7400 36 1 8.5254 -5.9660 0.8523 37 1 7.3966 -8.1958 0.6072 38 1 6.4243 -8.0142 4.7364 39 1 7.8438 -8.6367 3.8619 40 1 7.4386 -6.0106 4.9568 41 1 8.8582 -6.6330 4.0819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845223859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:51 Heat of formation + Delta-G solvation = -134.312186 kcal Electronic energy + Delta-G solvation = -22070.899677 eV Core-core repulsion = 18722.426981 eV Total energy + Delta-G solvation = -3348.472696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31618 -39.48256 -37.12624 -36.03452 -33.06473 -31.81883 -31.19992 -30.95710 -29.90488 -26.45289 -24.29582 -22.65373 -22.53696 -22.09726 -21.59732 -20.56421 -17.69253 -17.20142 -17.09075 -16.67238 -16.48213 -16.06889 -15.38328 -15.00847 -14.68691 -14.28230 -13.74902 -13.34060 -13.31554 -12.94370 -12.67570 -12.43516 -12.36967 -12.33424 -12.23071 -11.90299 -11.73888 -11.62799 -11.26262 -10.86260 -10.73725 -10.53410 -10.37112 -10.30937 -10.12246 -10.09143 -9.96526 -9.07811 -8.93649 -8.66414 -8.28803 -6.48733 -4.17483 2.13450 2.32174 2.77771 3.42231 3.44923 3.63786 4.27334 4.37566 4.39346 4.46144 4.63713 4.79952 4.91228 4.99779 5.03600 5.05329 5.16729 5.23060 5.29260 5.29354 5.32585 5.39071 5.50502 5.71447 5.74652 5.78915 5.84768 5.86259 5.87906 5.97063 5.99975 6.02020 6.11400 6.51740 6.61580 6.69857 6.82534 7.08256 7.82737 7.89419 8.13406 8.59648 8.77274 9.52985 10.91610 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.003788 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.217376 B = 7389.425452 C = 8301.587821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.382 6.382 11 C 0.059 3.941 12 C 0.075 3.925 13 O -0.341 6.341 14 C 0.464 3.536 15 O -0.511 6.511 16 C -0.074 4.074 17 H 0.109 0.891 18 C -0.106 4.106 19 C -0.062 4.062 20 H 0.087 0.913 21 C -0.172 4.172 22 C -0.141 4.141 23 C -0.045 4.045 24 H 0.088 0.912 25 C -0.111 4.111 26 C -0.114 4.114 27 H 0.267 0.733 28 H -0.003 1.003 29 H -0.004 1.004 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -16.355 7.692 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.906 3.094 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.635 4.635 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.301 6.301 11 C -0.018 4.018 12 C 0.001 3.999 13 O -0.257 6.257 14 C 0.307 3.693 15 O -0.399 6.399 16 C -0.093 4.093 17 H 0.127 0.873 18 C -0.144 4.144 19 C -0.080 4.080 20 H 0.105 0.895 21 C -0.190 4.190 22 C -0.159 4.159 23 C -0.064 4.064 24 H 0.106 0.894 25 C -0.149 4.149 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.109 -14.895 7.422 21.185 hybrid contribution -0.315 -1.892 -0.348 1.949 sum 12.794 -16.786 7.074 22.260 Atomic orbital electron populations 1.70808 1.06839 1.30412 1.46624 1.25944 0.96398 1.02692 0.93527 0.83405 0.74737 0.74472 0.76800 1.20597 1.21147 1.21196 1.21894 0.95475 0.90346 1.55758 0.92102 1.20321 0.89396 0.84963 0.94223 1.87949 1.34648 1.12391 1.95115 1.22365 0.93488 0.85509 1.00460 1.23150 0.93603 0.98536 0.84589 1.86599 1.43483 1.54353 1.41283 1.23654 0.78754 0.77817 0.89049 1.90615 1.67594 1.38230 1.43462 1.21214 0.95683 0.98353 0.94012 0.87324 1.21664 0.93978 0.94538 1.04215 1.20700 0.95314 0.98637 0.93373 0.89497 1.23831 1.00781 0.96237 0.98122 1.23683 0.96763 0.97563 0.97859 1.20536 0.93782 0.97609 0.94447 0.89400 1.21669 0.99154 0.97853 0.96221 1.21694 1.00500 0.95344 0.97610 0.92322 0.98499 0.98658 0.93210 0.92034 0.90453 0.90582 0.90171 0.89951 0.86262 0.86183 0.91381 0.91298 0.91359 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.65 55.43 0.76 -27.22 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 3 Si 1.08 25.50 29.90 -169.99 -5.08 20.41 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.60 -17.92 9.43 -34.44 -0.32 -18.24 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.19 5.10 5.00 36.01 0.18 5.28 16 10 O -0.38 -9.44 10.30 -38.80 -0.40 -9.84 16 11 C 0.06 1.11 6.33 37.16 0.24 1.34 16 12 C 0.07 1.23 5.84 37.16 0.22 1.45 16 13 O -0.34 -5.87 10.00 -42.05 -0.42 -6.29 16 14 C 0.46 7.07 6.70 36.01 0.24 7.32 16 15 O -0.51 -8.55 14.73 -18.75 -0.28 -8.83 16 16 C -0.07 -0.86 2.62 -91.57 -0.24 -1.10 16 17 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -1.25 5.29 -26.50 -0.14 -1.39 16 19 C -0.06 -0.62 3.58 -90.61 -0.32 -0.95 16 20 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.17 -1.90 9.81 -35.38 -0.35 -2.25 16 22 C -0.14 -1.62 8.26 -35.38 -0.29 -1.91 16 23 C -0.05 -0.47 2.68 -90.61 -0.24 -0.71 16 24 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 25 C -0.11 -0.90 5.67 -26.47 -0.15 -1.05 16 26 C -0.11 -0.93 5.67 -26.49 -0.15 -1.08 16 27 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 28 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 29 H 0.00 -0.12 8.01 -51.93 -0.42 -0.53 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 34 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -33.76 334.52 -8.45 -42.21 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.64 Total: -2.62 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.44 Total: -12.89 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.76 Total: -27.22 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.10 Total: -24.95 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.76 -8.45 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845223859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.097 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds