Wall clock time and date at job start Tue Mar 31 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46724 * 65.00143 * 12 11 10 14 14 C 1.34238 * 116.99457 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.46098 * 60.02567 * 16 14 13 18 18 C 1.53039 * 109.45544 * 300.07715 * 16 14 13 19 19 C 1.53411 * 109.54424 * 239.97999 * 18 16 14 20 20 H 1.09001 * 111.31930 * 177.41872 * 19 18 16 21 21 C 1.52148 * 107.84521 * 55.70627 * 19 18 16 22 22 C 1.33095 * 113.75993 * 301.71750 * 21 19 18 23 23 C 1.52149 * 113.75607 * 0.02562 * 22 21 19 24 24 H 1.09005 * 111.33565 * 179.97438 * 23 22 21 25 25 C 1.53491 * 107.68027 * 301.58601 * 23 22 21 26 26 C 1.53019 * 109.53615 * 55.82464 * 25 23 22 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 31 31 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 32 32 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 33 33 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 34 34 H 1.08995 * 109.46016 * 359.97438 * 18 16 14 35 35 H 1.08997 * 109.45788 * 119.96039 * 18 16 14 36 36 H 1.08007 * 123.11981 * 121.74157 * 21 19 18 37 37 H 1.08001 * 123.12120 * 180.02562 * 22 21 19 38 38 H 1.09006 * 109.46104 * 175.83960 * 25 23 22 39 39 H 1.08993 * 109.46540 * 295.79724 * 25 23 22 40 40 H 1.09005 * 109.46331 * 120.02121 * 26 25 23 41 41 H 1.09010 * 109.46004 * 239.99004 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2406 14 6 4.3946 -6.7761 1.3995 15 8 4.6283 -7.5833 0.5314 16 6 5.2185 -6.7667 2.6614 17 1 4.5701 -6.9414 3.5198 18 6 5.9064 -5.4078 2.8108 19 6 7.4278 -5.6029 2.8375 20 1 7.9489 -4.6474 2.8977 21 6 7.8237 -6.3549 1.5754 22 6 7.2254 -7.5367 1.4455 23 6 6.2780 -7.8729 2.5876 24 1 5.8103 -8.8466 2.4413 25 6 7.0905 -7.8494 3.8895 26 6 7.7783 -6.4907 4.0390 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 0.9453 -4.9821 0.8913 31 1 0.9447 -4.9827 -0.8887 32 1 2.1822 -6.9374 -0.0887 33 1 3.3210 -5.7957 -0.8419 34 1 5.6373 -4.7700 1.9689 35 1 5.5843 -4.9380 3.7400 36 1 8.5254 -5.9660 0.8523 37 1 7.3966 -8.1958 0.6072 38 1 6.4243 -8.0142 4.7364 39 1 7.8438 -8.6367 3.8619 40 1 7.4386 -6.0106 4.9568 41 1 8.8582 -6.6330 4.0819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845223859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:50 Heat of formation + Delta-G solvation = -153.564545 kcal Electronic energy + Delta-G solvation = -22071.734522 eV Core-core repulsion = 18722.426981 eV Total energy + Delta-G solvation = -3349.307541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31994 -40.57274 -38.88651 -37.45264 -35.27363 -32.83262 -32.00845 -31.70819 -31.38040 -28.58514 -25.39553 -24.77932 -23.65569 -23.20247 -22.41070 -21.67391 -19.26060 -18.85888 -18.23738 -17.92890 -17.73575 -17.16320 -16.66564 -16.53266 -15.93468 -15.69122 -15.48863 -14.83686 -14.62570 -14.07280 -13.98304 -13.66509 -13.56910 -13.27354 -13.21199 -13.15789 -13.07379 -12.97432 -12.56836 -12.45814 -12.23729 -11.90284 -11.82638 -11.74994 -11.14038 -11.10233 -10.90955 -10.86889 -10.79774 -10.41886 -9.94338 -8.85135 -6.56385 1.11828 1.26282 1.52656 1.61278 1.61987 1.82765 2.47716 2.88616 3.02018 3.39490 3.51012 3.60789 3.81500 3.93335 3.97957 4.05870 4.13507 4.24942 4.27325 4.32206 4.35494 4.45674 4.48301 4.49256 4.54635 4.58437 4.71850 4.86184 5.00775 5.05587 5.09990 5.13452 5.15797 5.31607 5.36987 5.39362 5.63019 5.69008 5.88948 5.96653 6.30598 6.57612 6.67447 7.23957 8.56446 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.003788 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.217376 B = 7389.425452 C = 8301.587821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.026 4.026 3 Si 1.127 2.873 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.627 4.627 8 H 0.051 0.949 9 C 0.195 3.805 10 O -0.403 6.403 11 C 0.052 3.948 12 C 0.078 3.922 13 O -0.360 6.360 14 C 0.461 3.539 15 O -0.530 6.530 16 C -0.071 4.071 17 H 0.134 0.866 18 C -0.106 4.106 19 C -0.062 4.062 20 H 0.092 0.908 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.043 4.043 24 H 0.087 0.913 25 C -0.107 4.107 26 C -0.110 4.110 27 H 0.257 0.743 28 H -0.013 1.013 29 H -0.012 1.012 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.110 -16.563 9.066 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.945 3.055 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.664 4.664 8 H 0.070 0.930 9 C 0.120 3.880 10 O -0.323 6.323 11 C -0.024 4.024 12 C 0.005 3.995 13 O -0.276 6.276 14 C 0.305 3.695 15 O -0.419 6.419 16 C -0.090 4.090 17 H 0.151 0.849 18 C -0.144 4.144 19 C -0.080 4.080 20 H 0.110 0.890 21 C -0.198 4.198 22 C -0.174 4.174 23 C -0.062 4.062 24 H 0.106 0.894 25 C -0.144 4.144 26 C -0.148 4.148 27 H 0.066 0.934 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.135 -15.148 8.797 22.509 hybrid contribution -0.654 -1.929 -0.829 2.199 sum 13.482 -17.077 7.969 23.171 Atomic orbital electron populations 1.70930 1.07695 1.29911 1.47808 1.27583 0.96447 1.06469 0.91861 0.82841 0.74102 0.70237 0.78293 1.19949 1.19109 1.19340 1.22263 0.95364 0.92121 1.56655 0.93021 1.20013 0.89223 0.85532 0.93223 1.87892 1.35058 1.14092 1.95256 1.22694 0.94643 0.83217 1.01892 1.23123 0.93044 0.99059 0.84311 1.86599 1.44291 1.55343 1.41400 1.24416 0.78201 0.76881 0.89990 1.90600 1.67961 1.38922 1.44429 1.21415 0.95858 0.98867 0.92884 0.84869 1.21665 0.95284 0.94003 1.03408 1.20748 0.94063 0.99345 0.93856 0.88957 1.24043 1.00722 0.96282 0.98765 1.23810 0.97468 0.97807 0.98354 1.20583 0.93351 0.96906 0.95339 0.89441 1.21687 0.99360 0.98115 0.95263 1.21700 1.01150 0.94943 0.96969 0.93406 0.99540 0.99440 0.92285 0.90008 0.87275 0.91609 0.93681 0.88421 0.86141 0.86985 0.89530 0.90379 0.89868 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.65 21.45 0.29 -56.88 16 2 C -0.03 -1.52 5.46 84.65 0.46 -1.06 16 3 Si 1.13 50.35 29.90 68.60 2.05 52.41 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.63 -38.09 9.43 25.60 0.24 -37.85 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.20 10.94 5.00 71.24 0.36 11.30 16 10 O -0.40 -20.25 10.30 -145.57 -1.50 -21.74 16 11 C 0.05 1.93 6.33 71.98 0.46 2.38 16 12 C 0.08 2.53 5.84 71.98 0.42 2.95 16 13 O -0.36 -12.31 10.00 -48.85 -0.49 -12.80 16 14 C 0.46 13.86 6.70 71.24 0.48 14.34 16 15 O -0.53 -17.65 14.73 21.97 0.32 -17.33 16 16 C -0.07 -1.58 2.62 -11.41 -0.03 -1.61 16 17 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.11 -2.39 5.29 30.75 0.16 -2.23 16 19 C -0.06 -1.16 3.58 -10.79 -0.04 -1.20 16 20 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.18 -3.91 9.81 25.00 0.25 -3.67 16 22 C -0.16 -3.53 8.26 25.00 0.21 -3.32 16 23 C -0.04 -0.83 2.68 -10.79 -0.03 -0.86 16 24 H 0.09 1.68 8.07 -2.38 -0.02 1.66 16 25 C -0.11 -1.42 5.67 30.77 0.17 -1.24 16 26 C -0.11 -1.49 5.67 30.75 0.17 -1.32 16 27 H 0.26 15.90 7.22 -92.71 -0.67 15.23 16 28 H -0.01 -0.74 8.01 -2.39 -0.02 -0.76 16 29 H -0.01 -0.68 8.01 -2.38 -0.02 -0.70 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.11 2.84 8.13 -2.39 -0.02 2.82 16 33 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.04 1.33 7.48 -2.39 -0.02 1.31 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.11 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -72.89 334.52 5.05 -67.84 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.09 Total: 11.89 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.28 Total: -23.38 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.29 Total: -56.88 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -1.66 Total: -51.87 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Total: -72.89 5.05 -67.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845223859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.727 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds