Wall clock time and date at job start Tue Mar 31 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00540 * 2 1 4 4 H 1.48500 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47255 * 300.00513 * 3 2 1 6 6 H 1.48501 * 109.47027 * 60.00185 * 3 2 1 7 7 C 1.37878 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00037 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00090 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00170 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.00285 * 180.02562 * 11 10 9 14 14 N 1.46891 * 109.47495 * 187.75481 * 13 11 10 15 15 C 1.46928 * 111.00277 * 54.76518 * 14 13 11 16 16 C 1.53214 * 109.55622 * 187.30405 * 15 14 13 17 17 C 1.51411 * 108.55739 * 304.49154 * 16 15 14 18 18 O 1.20766 * 121.16817 * 230.65555 * 17 16 15 19 19 C 1.51589 * 117.65724 * 50.63049 * 17 16 15 20 20 C 1.46490 * 111.00337 * 179.27335 * 14 13 11 21 21 C 1.53377 * 113.70010 * 43.28760 * 20 14 13 22 22 C 1.53853 * 86.97818 * 220.02107 * 21 20 14 23 23 C 1.53400 * 113.63689 * 305.26717 * 20 14 13 24 24 H 0.97003 * 119.99504 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47194 * 60.00321 * 9 7 2 26 26 H 1.09004 * 109.47665 * 300.00884 * 9 7 2 27 27 H 0.97000 * 120.00089 * 0.27816 * 10 9 7 28 28 H 1.09002 * 109.46745 * 307.75283 * 13 11 10 29 29 H 1.08999 * 109.46831 * 67.74686 * 13 11 10 30 30 H 1.09002 * 109.45836 * 307.33483 * 15 14 13 31 31 H 1.09004 * 109.45460 * 67.27863 * 15 14 13 32 32 H 1.08997 * 109.62239 * 184.76863 * 16 15 14 33 33 H 1.09000 * 109.62174 * 64.21552 * 16 15 14 34 34 H 1.08990 * 109.77354 * 193.26050 * 19 17 16 35 35 H 1.09001 * 109.76751 * 72.47270 * 19 17 16 36 36 H 1.09002 * 113.63222 * 334.54056 * 21 20 14 37 37 H 1.08998 * 113.63187 * 105.49155 * 21 20 14 38 38 H 1.09003 * 113.59871 * 270.58202 * 22 21 20 39 39 H 1.08993 * 113.60557 * 139.71218 * 22 21 20 40 40 H 1.08997 * 113.63393 * 254.56693 * 23 20 14 41 41 H 1.09001 * 113.63022 * 25.43390 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7534 -4.8834 -0.0011 12 8 0.5610 -5.1049 -0.0020 13 6 2.7326 -6.0290 -0.0005 14 7 2.0078 -7.2928 -0.1881 15 6 1.1803 -7.2502 -1.4014 16 6 0.3039 -8.5051 -1.4687 17 6 1.1996 -9.7233 -1.3902 18 8 1.1095 -10.6183 -2.1960 19 6 2.2138 -9.7796 -0.2649 20 6 2.9316 -8.4295 -0.2100 21 6 4.0192 -8.3610 0.8693 22 6 4.9941 -8.8945 -0.1946 23 6 4.0507 -8.2926 -1.2502 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6244 -2.5571 0.8896 27 1 3.1564 -3.4356 0.0035 28 1 3.4476 -5.8962 -0.8125 29 1 3.2637 -6.0524 0.9511 30 1 0.5453 -6.3646 -1.3769 31 1 1.8251 -7.2101 -2.2794 32 1 -0.2478 -8.5163 -2.4087 33 1 -0.3942 -8.5093 -0.6316 34 1 2.9353 -10.5732 -0.4583 35 1 1.7049 -9.9653 0.6810 36 1 4.2444 -7.3467 1.1989 37 1 3.8565 -9.0502 1.6979 38 1 5.0499 -9.9826 -0.2288 39 1 5.9750 -8.4203 -0.1647 40 1 3.9132 -8.9269 -2.1259 41 1 4.2835 -7.2595 -1.5080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846993151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:10 Heat of formation + Delta-G solvation = -40.238260 kcal Electronic energy + Delta-G solvation = -22453.145825 eV Core-core repulsion = 19141.045232 eV Total energy + Delta-G solvation = -3312.100593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27051 -39.04784 -38.52425 -35.34094 -34.13809 -32.48292 -31.98137 -29.69799 -28.03400 -26.24250 -25.84888 -24.00724 -22.86659 -22.09249 -20.10470 -19.65552 -17.98836 -17.42290 -16.72958 -15.97765 -15.68191 -15.59356 -15.23374 -15.11931 -14.73442 -14.66790 -14.25173 -14.00646 -13.73641 -13.21122 -13.08080 -12.55691 -12.25457 -12.13331 -11.99926 -11.83569 -11.75340 -11.45284 -11.21964 -11.03416 -10.97558 -10.85646 -10.76163 -10.54366 -10.35012 -9.54474 -9.42011 -8.97858 -8.77225 -8.25510 -7.90696 -6.20852 -4.27915 1.81402 3.20623 3.25055 3.27878 3.30524 3.47072 3.91342 4.09242 4.31094 4.33131 4.36504 4.43934 4.59188 4.84611 4.98842 5.04795 5.15412 5.17481 5.24578 5.32319 5.39704 5.44221 5.51462 5.55488 5.62757 5.68793 5.73302 5.75719 5.88683 6.00327 6.10697 6.18608 6.85495 7.04662 7.26373 7.36404 7.38103 7.46541 7.62182 7.92419 8.55912 8.73339 9.03234 9.38992 10.89323 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029631 B = 0.003662 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.729608 B = 7645.091740 C = 8274.724482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.711 5.711 11 C 0.497 3.503 12 O -0.538 6.538 13 C 0.031 3.969 14 N -0.505 5.505 15 C 0.044 3.956 16 C -0.161 4.161 17 C 0.364 3.636 18 O -0.465 6.465 19 C -0.138 4.138 20 C 0.097 3.903 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.179 4.179 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.390 0.610 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -16.984 0.179 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.417 6.417 13 C -0.099 4.099 14 N -0.228 5.228 15 C -0.083 4.083 16 C -0.199 4.199 17 C 0.240 3.760 18 O -0.339 6.339 19 C -0.176 4.176 20 C 0.007 3.993 21 C -0.170 4.170 22 C -0.175 4.175 23 C -0.218 4.218 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.223 0.777 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.656 -17.507 0.144 19.108 hybrid contribution 1.454 1.236 -0.582 1.995 sum 9.110 -16.271 -0.438 18.653 Atomic orbital electron populations 1.69981 1.06109 1.27240 1.48871 1.24947 0.94908 0.99466 0.94657 0.86369 0.79823 0.82975 0.77790 1.19639 1.20788 1.20771 1.21255 0.93291 0.90446 1.53247 0.91862 1.19115 0.88258 0.81879 0.97786 1.46472 1.11182 1.06072 1.72277 1.20272 0.89512 0.84165 0.77923 1.90577 1.16712 1.84320 1.50067 1.22154 0.95748 0.88870 1.03147 1.61352 1.22150 1.00781 1.38528 1.22470 0.96339 1.00016 0.89428 1.22320 0.99052 0.93468 1.05042 1.25042 0.82173 0.85926 0.82868 1.90394 1.65622 1.38797 1.39053 1.22119 0.98644 0.96489 1.00366 1.22093 0.89636 0.90610 0.97008 1.23210 0.94378 1.02700 0.96740 1.22757 0.97880 1.00672 0.96151 1.23647 0.97941 1.02097 0.98104 0.92466 0.95511 0.95438 0.77744 0.92140 0.87497 0.85617 0.95148 0.89086 0.87236 0.88771 0.87149 0.88826 0.90565 0.90032 0.91015 0.91442 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.31 9.28 -34.44 -0.32 -14.63 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.36 5.43 -5.20 -0.03 6.34 16 10 N -0.71 -13.96 5.55 -61.47 -0.34 -14.30 16 11 C 0.50 9.07 7.32 -10.98 -0.08 8.99 16 12 O -0.54 -11.80 13.84 5.55 0.08 -11.73 16 13 C 0.03 0.41 4.72 -4.98 -0.02 0.38 16 14 N -0.51 -6.45 4.48 -220.08 -0.99 -7.43 16 15 C 0.04 0.60 4.95 -3.70 -0.02 0.59 16 16 C -0.16 -1.95 6.30 -27.42 -0.17 -2.12 16 17 C 0.36 4.41 6.75 -28.25 -0.19 4.22 16 18 O -0.46 -6.93 17.91 5.99 0.11 -6.83 16 19 C -0.14 -1.34 5.38 -27.44 -0.15 -1.49 16 20 C 0.10 0.98 0.93 -131.42 -0.12 0.86 16 21 C -0.13 -1.10 7.03 -26.09 -0.18 -1.29 16 22 C -0.14 -1.04 7.73 -25.85 -0.20 -1.24 16 23 C -0.18 -1.68 6.30 -26.08 -0.16 -1.84 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.50 8.32 -40.82 -0.34 6.16 16 28 H 0.06 0.69 6.08 -51.93 -0.32 0.37 16 29 H 0.11 1.19 5.97 -51.93 -0.31 0.88 16 30 H 0.13 2.11 5.04 -51.93 -0.26 1.85 16 31 H 0.03 0.40 7.57 -51.93 -0.39 0.01 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 0.81 7.34 -51.93 -0.38 0.43 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.78 5.60 -51.93 -0.29 0.49 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.09 0.85 6.02 -51.93 -0.31 0.54 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -31.56 324.02 -8.21 -39.76 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.91 Total: 4.67 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.75 Total: 0.40 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.59 Total: -46.55 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.55 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.56 -8.21 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.473 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds