Wall clock time and date at job start Tue Mar 31 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00540 * 2 1 4 4 H 1.48500 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47255 * 300.00513 * 3 2 1 6 6 H 1.48501 * 109.47027 * 60.00185 * 3 2 1 7 7 C 1.37878 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00037 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00090 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00170 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.00285 * 180.02562 * 11 10 9 14 14 N 1.46891 * 109.47495 * 187.75481 * 13 11 10 15 15 C 1.46928 * 111.00277 * 54.76518 * 14 13 11 16 16 C 1.53214 * 109.55622 * 187.30405 * 15 14 13 17 17 C 1.51411 * 108.55739 * 304.49154 * 16 15 14 18 18 O 1.20766 * 121.16817 * 230.65555 * 17 16 15 19 19 C 1.51589 * 117.65724 * 50.63049 * 17 16 15 20 20 C 1.46490 * 111.00337 * 179.27335 * 14 13 11 21 21 C 1.53377 * 113.70010 * 43.28760 * 20 14 13 22 22 C 1.53853 * 86.97818 * 220.02107 * 21 20 14 23 23 C 1.53400 * 113.63689 * 305.26717 * 20 14 13 24 24 H 0.97003 * 119.99504 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47194 * 60.00321 * 9 7 2 26 26 H 1.09004 * 109.47665 * 300.00884 * 9 7 2 27 27 H 0.97000 * 120.00089 * 0.27816 * 10 9 7 28 28 H 1.09002 * 109.46745 * 307.75283 * 13 11 10 29 29 H 1.08999 * 109.46831 * 67.74686 * 13 11 10 30 30 H 1.09002 * 109.45836 * 307.33483 * 15 14 13 31 31 H 1.09004 * 109.45460 * 67.27863 * 15 14 13 32 32 H 1.08997 * 109.62239 * 184.76863 * 16 15 14 33 33 H 1.09000 * 109.62174 * 64.21552 * 16 15 14 34 34 H 1.08990 * 109.77354 * 193.26050 * 19 17 16 35 35 H 1.09001 * 109.76751 * 72.47270 * 19 17 16 36 36 H 1.09002 * 113.63222 * 334.54056 * 21 20 14 37 37 H 1.08998 * 113.63187 * 105.49155 * 21 20 14 38 38 H 1.09003 * 113.59871 * 270.58202 * 22 21 20 39 39 H 1.08993 * 113.60557 * 139.71218 * 22 21 20 40 40 H 1.08997 * 113.63393 * 254.56693 * 23 20 14 41 41 H 1.09001 * 113.63022 * 25.43390 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7534 -4.8834 -0.0011 12 8 0.5610 -5.1049 -0.0020 13 6 2.7326 -6.0290 -0.0005 14 7 2.0078 -7.2928 -0.1881 15 6 1.1803 -7.2502 -1.4014 16 6 0.3039 -8.5051 -1.4687 17 6 1.1996 -9.7233 -1.3902 18 8 1.1095 -10.6183 -2.1960 19 6 2.2138 -9.7796 -0.2649 20 6 2.9316 -8.4295 -0.2100 21 6 4.0192 -8.3610 0.8693 22 6 4.9941 -8.8945 -0.1946 23 6 4.0507 -8.2926 -1.2502 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6244 -2.5571 0.8896 27 1 3.1564 -3.4356 0.0035 28 1 3.4476 -5.8962 -0.8125 29 1 3.2637 -6.0524 0.9511 30 1 0.5453 -6.3646 -1.3769 31 1 1.8251 -7.2101 -2.2794 32 1 -0.2478 -8.5163 -2.4087 33 1 -0.3942 -8.5093 -0.6316 34 1 2.9353 -10.5732 -0.4583 35 1 1.7049 -9.9653 0.6810 36 1 4.2444 -7.3467 1.1989 37 1 3.8565 -9.0502 1.6979 38 1 5.0499 -9.9826 -0.2288 39 1 5.9750 -8.4203 -0.1647 40 1 3.9132 -8.9269 -2.1259 41 1 4.2835 -7.2595 -1.5080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846993151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:09 Heat of formation + Delta-G solvation = -63.307774 kcal Electronic energy + Delta-G solvation = -22454.146194 eV Core-core repulsion = 19141.045232 eV Total energy + Delta-G solvation = -3313.100962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.18418 -40.39596 -39.64358 -36.51405 -35.80443 -34.35102 -33.12063 -30.53660 -29.76390 -27.49756 -26.73295 -24.92392 -24.50415 -23.23943 -21.47503 -20.76818 -19.10344 -18.70071 -18.01383 -17.36430 -16.88854 -16.75790 -16.62318 -16.31759 -16.01234 -15.89003 -15.34097 -15.16679 -14.99113 -14.46011 -14.20817 -13.97738 -13.89021 -13.48518 -13.09161 -12.86407 -12.82824 -12.75710 -12.56098 -12.35145 -12.28531 -12.19404 -11.81200 -11.43647 -11.42544 -11.30307 -10.79792 -10.72316 -10.31170 -9.76521 -9.20433 -8.28042 -6.44003 0.83630 1.44599 1.45045 1.58417 1.77929 2.24574 2.43781 2.89574 3.03674 3.07473 3.56967 3.60724 3.64113 3.83712 3.90210 4.06381 4.09005 4.15549 4.24625 4.40063 4.46025 4.58057 4.71561 4.82448 4.87459 4.90230 4.95180 5.00835 5.07542 5.14045 5.16230 5.22310 5.27832 5.46260 5.51726 5.72195 5.85523 5.89291 6.10984 6.40107 6.67816 6.95908 7.25734 7.53918 8.84198 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029631 B = 0.003662 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.729608 B = 7645.091740 C = 8274.724482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.708 5.708 11 C 0.493 3.507 12 O -0.579 6.579 13 C 0.046 3.954 14 N -0.517 5.517 15 C 0.050 3.950 16 C -0.160 4.160 17 C 0.370 3.630 18 O -0.495 6.495 19 C -0.132 4.132 20 C 0.090 3.910 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.182 4.182 24 H 0.268 0.732 25 H -0.013 1.013 26 H -0.012 1.012 27 H 0.408 0.592 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.271 -17.596 0.955 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.358 5.358 11 C 0.280 3.720 12 O -0.460 6.460 13 C -0.084 4.084 14 N -0.240 5.240 15 C -0.077 4.077 16 C -0.198 4.198 17 C 0.248 3.752 18 O -0.372 6.372 19 C -0.170 4.170 20 C 0.000 4.000 21 C -0.165 4.165 22 C -0.163 4.163 23 C -0.221 4.221 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.244 0.756 28 H 0.102 0.898 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.906 -18.150 0.928 21.195 hybrid contribution 0.386 1.361 -0.840 1.645 sum 11.292 -16.789 0.088 20.233 Atomic orbital electron populations 1.70140 1.08250 1.28417 1.50164 1.26030 0.95724 1.03820 0.93964 0.85149 0.79185 0.77534 0.77582 1.17558 1.20653 1.20562 1.21663 0.94334 0.90628 1.52563 0.89783 1.18511 0.88654 0.84251 0.94088 1.46181 1.11183 1.05492 1.72955 1.21262 0.89965 0.84735 0.76011 1.90577 1.19122 1.84938 1.51325 1.22098 0.94159 0.86583 1.05559 1.61337 1.23175 1.01500 1.37993 1.22235 0.96260 0.99033 0.90202 1.22299 0.99100 0.93316 1.05129 1.25267 0.82073 0.84919 0.82948 1.90390 1.66587 1.39733 1.40446 1.22152 0.98273 0.96868 0.99699 1.22295 0.89490 0.89405 0.98791 1.23230 0.93151 1.03360 0.96779 1.22740 0.97861 1.01327 0.94340 1.23672 0.98291 1.02072 0.98087 0.92331 0.99482 0.99415 0.75649 0.89752 0.84637 0.89181 0.94923 0.89227 0.87091 0.87077 0.85643 0.88513 0.89234 0.88966 0.89853 0.92356 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.98 41.48 29.54 68.60 2.03 43.51 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -29.27 9.28 25.60 0.24 -29.03 16 8 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.27 14.20 5.43 85.63 0.46 14.66 16 10 N -0.71 -27.94 5.55 -466.78 -2.59 -30.53 16 11 C 0.49 18.12 7.32 87.66 0.64 18.76 16 12 O -0.58 -26.52 13.84 -3.04 -0.04 -26.56 16 13 C 0.05 1.10 4.72 85.56 0.40 1.50 16 14 N -0.52 -12.44 4.48 -850.20 -3.81 -16.25 16 15 C 0.05 1.38 4.95 86.37 0.43 1.81 16 16 C -0.16 -3.93 6.30 30.15 0.19 -3.74 16 17 C 0.37 8.61 6.75 29.61 0.20 8.81 16 18 O -0.50 -14.51 17.91 -1.47 -0.03 -14.53 16 19 C -0.13 -2.23 5.38 30.13 0.16 -2.07 16 20 C 0.09 1.57 0.93 3.87 0.00 1.57 16 21 C -0.13 -1.61 7.03 31.01 0.22 -1.39 16 22 C -0.12 -1.39 7.73 31.17 0.24 -1.15 16 23 C -0.18 -2.90 6.30 31.01 0.20 -2.70 16 24 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 25 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H 0.41 13.02 8.32 -92.71 -0.77 12.25 16 28 H 0.08 1.68 6.08 -2.39 -0.01 1.66 16 29 H 0.14 2.55 5.97 -2.39 -0.01 2.53 16 30 H 0.09 3.18 5.04 -2.39 -0.01 3.17 16 31 H 0.03 0.86 7.57 -2.38 -0.02 0.84 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.11 1.55 7.34 -2.39 -0.02 1.54 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.18 5.60 -2.39 -0.01 1.17 16 37 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 38 H 0.09 0.87 7.65 -2.39 -0.02 0.85 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 41 H 0.09 1.41 6.02 -2.39 -0.01 1.40 16 Total: -1.00 -71.51 324.02 -0.03 -71.55 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.28 Total: 20.16 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 3.85 Total: 7.73 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -6.12 Total: -101.85 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.07 Total: -41.09 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -71.51 -0.03 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds