Wall clock time and date at job start Tue Mar 31 2020 01:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99958 * 2 1 4 4 C 1.50701 * 120.00179 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47080 * 182.01694 * 4 2 1 6 6 C 1.50705 * 112.84808 * 304.60637 * 5 4 2 7 7 O 1.20826 * 120.00165 * 114.72622 * 6 5 4 8 8 O 1.34231 * 119.99551 * 294.72454 * 6 5 4 9 9 C 1.45202 * 116.99755 * 174.99202 * 8 6 5 10 10 C 1.53001 * 109.47284 * 184.83563 * 9 8 6 11 11 C 1.50703 * 115.55419 * 269.19966 * 10 9 8 12 12 H 1.08010 * 119.99777 * 140.76322 * 11 10 9 13 13 C 1.37873 * 120.00493 * 320.75895 * 11 10 9 14 14 N 1.31515 * 119.99929 * 347.25252 * 13 11 10 15 15 Si 1.86802 * 120.00314 * 167.25243 * 13 11 10 16 16 H 1.48506 * 109.47054 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46947 * 119.99871 * 15 13 11 18 18 H 1.48492 * 109.47178 * 240.00098 * 15 13 11 19 19 C 1.52996 * 117.49965 * 54.88300 * 10 9 8 20 20 C 1.53007 * 60.02705 * 107.48407 * 19 10 9 21 21 C 1.53777 * 113.69406 * 75.87496 * 5 4 2 22 22 C 1.53777 * 87.08416 * 89.12727 * 21 5 4 23 23 C 1.53778 * 113.61538 * 173.41019 * 5 4 2 24 24 H 1.09003 * 109.47334 * 270.00017 * 1 2 3 25 25 H 1.09000 * 109.47572 * 30.00008 * 1 2 3 26 26 H 1.09002 * 109.46865 * 150.00572 * 1 2 3 27 27 H 1.08998 * 109.47473 * 62.01520 * 4 2 1 28 28 H 1.09007 * 109.47176 * 302.01316 * 4 2 1 29 29 H 1.08997 * 109.46990 * 64.82777 * 9 8 6 30 30 H 1.09005 * 109.47207 * 304.83360 * 9 8 6 31 31 H 0.97003 * 120.00257 * 185.01006 * 14 13 11 32 32 H 1.09004 * 117.49739 * 214.97991 * 19 10 9 33 33 H 1.08991 * 117.50249 * 359.97438 * 19 10 9 34 34 H 1.09003 * 117.49926 * 107.50265 * 20 19 10 35 35 H 1.09001 * 117.49786 * 252.52080 * 20 19 10 36 36 H 1.08997 * 113.61443 * 203.67766 * 21 5 4 37 37 H 1.09005 * 113.61693 * 334.57819 * 21 5 4 38 38 H 1.08999 * 113.61395 * 270.88671 * 22 21 5 39 39 H 1.08997 * 113.69478 * 139.98805 * 22 21 5 40 40 H 1.09007 * 113.61377 * 25.35062 * 23 5 4 41 41 H 1.09002 * 113.61843 * 156.16177 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7640 -1.0259 0.0512 6 6 4.2295 -0.1241 -1.0629 7 8 4.6663 0.9735 -0.8092 8 8 4.1589 -0.5404 -2.3371 9 6 4.5191 0.4197 -3.3651 10 6 4.2635 -0.1902 -4.7448 11 6 5.4278 -0.9265 -5.3558 12 1 5.2603 -1.8426 -5.9030 13 6 6.7068 -0.4308 -5.2166 14 7 6.8928 0.7948 -4.7774 15 14 8.1755 -1.5000 -5.6518 16 1 7.7005 -2.8271 -6.1193 17 1 8.9603 -0.8476 -6.7304 18 1 9.0331 -1.6751 -4.4522 19 6 2.8596 -0.7268 -5.0309 20 6 3.3318 0.5698 -5.6919 21 6 4.2667 -0.5987 1.4403 22 6 4.4804 -2.0926 1.7358 23 6 4.6204 -2.2922 0.2174 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 2.0246 -1.8613 -0.9066 28 1 1.9704 -1.8918 0.8723 29 1 5.5746 0.6747 -3.2703 30 1 3.9160 1.3203 -3.2486 31 1 7.7873 1.1690 -4.7481 32 1 2.7780 -1.6123 -5.6612 33 1 2.1181 -0.6457 -4.2361 34 1 3.5608 0.5373 -6.7571 35 1 2.9012 1.5041 -5.3318 36 1 5.1915 -0.0226 1.4118 37 1 3.4980 -0.1367 2.0599 38 1 3.6051 -2.5830 2.1617 39 1 5.3951 -2.3030 2.2899 40 1 4.1373 -3.1975 -0.1505 41 1 5.6416 -2.1796 -0.1468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849765877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:22 Heat of formation + Delta-G solvation = -99.404049 kcal Electronic energy + Delta-G solvation = -23082.217029 eV Core-core repulsion = 19735.258064 eV Total energy + Delta-G solvation = -3346.958965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11480 -40.32006 -39.23668 -38.33000 -36.75675 -34.32030 -32.39356 -30.17182 -28.61589 -27.56410 -26.66020 -25.95735 -23.13227 -22.37606 -21.15111 -20.97832 -19.61236 -18.51819 -18.35998 -17.42796 -17.37854 -16.73915 -16.45469 -16.20991 -16.12146 -15.62899 -15.36234 -14.97058 -14.33879 -13.90501 -13.76656 -13.65023 -13.34516 -13.30123 -13.07181 -12.93157 -12.90622 -12.84388 -12.57252 -12.33583 -12.18282 -12.16227 -11.73069 -11.56338 -11.48962 -11.31361 -10.95323 -10.91894 -10.74530 -10.52615 -10.13974 -8.19097 -6.29251 1.05719 1.36959 1.39728 1.40308 1.52501 1.91218 2.35889 2.92595 3.02782 3.33418 3.54014 3.59557 3.65536 3.83888 3.96303 4.13664 4.26142 4.35871 4.43566 4.49921 4.52532 4.69990 4.72289 4.75472 4.76993 4.80631 4.85071 4.86889 4.94816 5.03245 5.09960 5.12647 5.14514 5.22265 5.41616 5.46017 5.47910 5.78862 5.84149 6.27133 6.63308 6.71444 6.99228 7.32817 8.83678 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.006020 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.728361 B = 4650.238300 C = 5472.263053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.332 3.668 3 O -0.500 6.500 4 C -0.143 4.143 5 C -0.079 4.079 6 C 0.457 3.543 7 O -0.548 6.548 8 O -0.356 6.356 9 C 0.112 3.888 10 C 0.009 3.991 11 C -0.499 4.499 12 H 0.067 0.933 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.257 1.257 17 H -0.278 1.278 18 H -0.283 1.283 19 C -0.163 4.163 20 C -0.193 4.193 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.121 4.121 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.165 0.835 29 H 0.086 0.914 30 H 0.013 0.987 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -10.357 13.226 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.211 3.789 3 O -0.377 6.377 4 C -0.180 4.180 5 C -0.080 4.080 6 C 0.302 3.698 7 O -0.438 6.438 8 O -0.272 6.272 9 C 0.039 3.961 10 C 0.008 3.992 11 C -0.536 4.536 12 H 0.086 0.914 13 C -0.185 4.185 14 N -0.554 5.554 15 Si 0.786 3.214 16 H -0.180 1.180 17 H -0.203 1.203 18 H -0.209 1.209 19 C -0.200 4.200 20 C -0.231 4.231 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.158 4.158 24 H 0.140 0.860 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.145 0.855 28 H 0.182 0.818 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.582 -9.378 13.341 20.002 hybrid contribution 1.228 0.837 -0.742 1.661 sum -10.354 -8.541 12.599 18.409 Atomic orbital electron populations 1.22283 0.90751 1.05691 1.06355 1.25523 0.94304 0.90127 0.68964 1.90585 1.73049 1.36893 1.37183 1.22208 0.88694 0.98180 1.08871 1.22071 0.98463 0.96708 0.90776 1.24426 0.74491 0.86625 0.84264 1.90557 1.44083 1.24211 1.84962 1.86426 1.79155 1.45630 1.16020 1.22667 1.01580 0.87070 0.84829 1.19007 0.90336 0.99845 0.89997 1.20881 0.90597 1.08552 1.33607 0.91445 1.25864 1.01979 0.95910 0.94710 1.69930 1.22897 1.15314 1.47219 0.85449 0.78699 0.79572 0.77701 1.18047 1.20322 1.20927 1.22766 0.97841 0.96769 1.02639 1.23015 1.06551 0.94617 0.98881 1.22889 1.00981 0.98897 0.92720 1.22887 1.04621 0.93052 0.94471 1.22985 0.98704 0.95796 0.98364 0.86019 0.91165 0.86589 0.85517 0.81788 0.89674 0.96890 0.92695 0.88756 0.89597 0.89727 0.91280 0.92438 0.90268 0.85622 0.89757 0.87210 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 10.25 71.23 0.73 -2.08 16 2 C 0.33 8.26 6.91 29.10 0.20 8.46 16 3 O -0.50 -19.09 14.57 15.49 0.23 -18.86 16 4 C -0.14 -2.80 5.01 29.85 0.15 -2.65 16 5 C -0.08 -2.33 0.70 -52.40 -0.04 -2.37 16 6 C 0.46 20.52 5.30 71.24 0.38 20.90 16 7 O -0.55 -29.49 15.04 27.82 0.42 -29.07 16 8 O -0.36 -17.35 10.04 -51.43 -0.52 -17.87 16 9 C 0.11 6.20 5.23 71.98 0.38 6.58 16 10 C 0.01 0.45 2.02 -52.91 -0.11 0.35 16 11 C -0.50 -27.92 9.01 25.60 0.23 -27.69 16 12 H 0.07 3.64 7.85 -2.91 -0.02 3.61 16 13 C 0.01 0.80 5.13 84.65 0.43 1.24 16 14 N -0.91 -55.02 10.92 21.45 0.23 -54.78 16 15 Si 0.96 44.01 29.56 68.60 2.03 46.03 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.16 -7.00 9.77 30.60 0.30 -6.70 16 20 C -0.19 -9.05 9.89 30.62 0.30 -8.75 16 21 C -0.12 -3.13 6.55 31.12 0.20 -2.93 16 22 C -0.11 -1.91 7.73 31.12 0.24 -1.67 16 23 C -0.12 -2.86 7.22 31.12 0.22 -2.63 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.12 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.16 1.41 7.31 -2.38 -0.02 1.40 16 29 H 0.09 5.37 5.28 -2.39 -0.01 5.36 16 30 H 0.01 0.73 7.83 -2.38 -0.02 0.71 16 31 H 0.26 15.10 8.32 -92.71 -0.77 14.33 16 32 H 0.09 3.74 8.14 -2.38 -0.02 3.72 16 33 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.08 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.07 3.14 8.03 -2.39 -0.02 3.12 16 36 H 0.06 1.92 7.71 -2.39 -0.02 1.90 16 37 H 0.08 1.93 8.03 -2.38 -0.02 1.91 16 38 H 0.13 1.12 7.61 -2.39 -0.02 1.10 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.96 8.10 -2.38 -0.02 1.94 16 41 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 Total: -1.00 -80.94 341.46 7.03 -73.91 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.01 Total: 20.59 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 3.63 Total: -19.95 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.23 Total: -54.78 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: 0.13 Total: -65.81 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -80.94 7.03 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849765877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.492 kcal (2) G-P(sol) polarization free energy of solvation -80.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds