Wall clock time and date at job start Tue Mar 31 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38569 * 110.99747 * 176.80867 * 14 13 12 16 16 C 1.39465 * 120.51914 * 303.52519 * 15 14 13 17 17 C 1.38467 * 118.30968 * 179.76399 * 16 15 14 18 18 F 1.35099 * 120.42820 * 180.26290 * 17 16 15 19 19 N 1.32786 * 119.14148 * 0.50788 * 17 16 15 20 20 C 1.31764 * 120.96306 * 359.75533 * 19 17 16 21 21 N 1.31759 * 121.85980 * 359.96896 * 20 19 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.07995 * 120.84122 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.06978 * 180.02562 * 20 19 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.09000 * 109.48854 * 63.21719 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1686 -8.7446 0.9102 16 6 -0.6012 -9.1233 2.0098 17 6 -1.2786 -10.3296 1.9530 18 9 -2.0409 -10.7358 2.9918 19 7 -1.1654 -11.0843 0.8663 20 6 -0.4247 -10.6983 -0.1529 21 7 0.2318 -9.5560 -0.1424 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.6705 -8.4898 2.8816 34 1 -0.3546 -11.3360 -1.0218 35 1 0.9039 -7.2992 -1.1706 36 1 2.2783 -8.2029 -0.4899 37 1 2.9469 -5.9105 -1.2002 38 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852128936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:29 Heat of formation + Delta-G solvation = 26.584917 kcal Electronic energy + Delta-G solvation = -21347.203442 eV Core-core repulsion = 17946.832966 eV Total energy + Delta-G solvation = -3400.370477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.47306 -41.47862 -39.19459 -36.20563 -33.43754 -32.96167 -31.87760 -30.89995 -29.73440 -26.73636 -25.17934 -24.12079 -23.29997 -22.94735 -20.54113 -19.81374 -18.69472 -18.39425 -16.63801 -16.58374 -16.23274 -15.91117 -15.28378 -15.19408 -14.87486 -14.63836 -14.47433 -14.35527 -13.98965 -13.89937 -13.52582 -12.76199 -12.33998 -12.01908 -11.47984 -11.29200 -11.26494 -11.20441 -11.01226 -10.85857 -10.77851 -10.53894 -10.15149 -9.91518 -9.81599 -9.43243 -9.16492 -8.80059 -8.38302 -7.88262 -6.04658 -4.07070 0.48685 0.62346 2.88668 3.09914 3.28151 3.35959 3.37439 3.39571 3.77623 4.23115 4.30394 4.46623 4.63332 4.72282 4.90079 5.04475 5.09864 5.27487 5.31540 5.32991 5.41074 5.49986 5.77376 5.87249 5.95900 6.04918 6.07236 6.13749 6.31853 6.40488 6.67782 6.69920 6.87716 7.34964 7.42400 7.66577 7.70647 7.81573 8.00842 8.37471 9.00128 9.57062 11.06680 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.038899 B = 0.003049 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.642525 B = 9180.426322 C = 9615.871150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.055 3.945 13 C 0.063 3.937 14 N -0.473 5.473 15 C 0.391 3.609 16 C -0.270 4.270 17 C 0.370 3.630 18 F -0.101 7.101 19 N -0.577 5.577 20 C 0.360 3.640 21 N -0.562 5.562 22 C 0.070 3.930 23 C 0.051 3.949 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.208 0.792 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -19.647 2.185 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.073 4.073 13 C -0.062 4.062 14 N -0.189 5.189 15 C 0.151 3.849 16 C -0.297 4.297 17 C 0.211 3.789 18 F -0.080 7.080 19 N -0.301 5.301 20 C 0.070 3.930 21 N -0.283 5.283 22 C -0.056 4.056 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.178 0.822 34 H 0.224 0.776 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.493 -19.983 1.472 20.043 hybrid contribution 0.383 1.263 1.142 1.746 sum -0.110 -18.720 2.614 18.902 Atomic orbital electron populations 1.69976 1.06025 1.26531 1.50661 1.24993 0.94839 0.99225 0.95252 0.86539 0.80091 0.83774 0.77605 1.19763 1.20970 1.21030 1.21217 0.93036 0.90997 1.50866 0.92715 1.19103 0.93965 0.90147 0.97754 1.22344 0.96767 0.87900 0.99267 1.62311 1.27874 1.02832 1.33570 1.22216 0.97853 0.95874 0.91390 1.22510 0.93541 0.87897 1.02254 1.58996 1.23943 1.00239 1.35705 1.20011 0.85484 0.91868 0.87567 1.22042 1.05037 0.99575 1.03055 1.18088 0.87749 0.89016 0.83998 1.91670 1.72361 1.90520 1.53424 1.67858 1.24076 1.36238 1.01893 1.24671 0.84795 0.89382 0.94120 1.68497 1.25900 1.07332 1.26601 1.22192 0.97280 0.98131 0.88040 1.22238 0.94235 0.89847 1.01487 0.93019 0.96531 0.95688 0.91830 0.95918 0.94092 0.88060 0.91894 0.89384 0.82244 0.77581 0.91618 0.89336 0.89712 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.69 4.91 -27.88 -0.14 0.55 16 10 C 0.06 1.27 4.90 -3.83 -0.02 1.25 16 11 N -0.54 -9.09 4.71 -234.47 -1.10 -10.20 16 12 C 0.06 0.84 5.41 -3.77 -0.02 0.82 16 13 C 0.06 0.78 5.38 -3.76 -0.02 0.76 16 14 N -0.47 -5.81 4.73 -172.89 -0.82 -6.63 16 15 C 0.39 4.58 6.40 -154.76 -0.99 3.59 16 16 C -0.27 -2.85 9.29 -39.04 -0.36 -3.21 16 17 C 0.37 4.13 8.50 -17.05 -0.14 3.98 16 18 F -0.10 -1.10 17.30 2.25 0.04 -1.06 16 19 N -0.58 -6.50 10.45 -14.98 -0.16 -6.66 16 20 C 0.36 3.47 12.28 -92.21 -1.13 2.34 16 21 N -0.56 -6.35 8.87 -13.84 -0.12 -6.48 16 22 C 0.07 0.87 4.80 -3.77 -0.02 0.85 16 23 C 0.05 0.70 5.61 -3.77 -0.02 0.68 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.43 6.49 -51.93 -0.34 0.09 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.70 6.34 -51.93 -0.33 1.38 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.90 6.87 -51.93 -0.36 0.54 16 33 H 0.16 1.40 7.27 -52.49 -0.38 1.02 16 34 H 0.21 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.09 1.02 7.84 -51.93 -0.41 0.61 16 37 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -30.26 316.03 -10.11 -40.36 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.14 Total: -3.27 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.28 Total: -1.54 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -1.47 Total: -55.47 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.26 -10.11 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852128936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.949 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds