Wall clock time and date at job start Tue Mar 31 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38569 * 110.99747 * 176.80867 * 14 13 12 16 16 C 1.39465 * 120.51914 * 303.52519 * 15 14 13 17 17 C 1.38467 * 118.30968 * 179.76399 * 16 15 14 18 18 F 1.35099 * 120.42820 * 180.26290 * 17 16 15 19 19 N 1.32786 * 119.14148 * 0.50788 * 17 16 15 20 20 C 1.31764 * 120.96306 * 359.75533 * 19 17 16 21 21 N 1.31759 * 121.85980 * 359.96896 * 20 19 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.07995 * 120.84122 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.06978 * 180.02562 * 20 19 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.09000 * 109.48854 * 63.21719 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1686 -8.7446 0.9102 16 6 -0.6012 -9.1233 2.0098 17 6 -1.2786 -10.3296 1.9530 18 9 -2.0409 -10.7358 2.9918 19 7 -1.1654 -11.0843 0.8663 20 6 -0.4247 -10.6983 -0.1529 21 7 0.2318 -9.5560 -0.1424 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.6705 -8.4898 2.8816 34 1 -0.3546 -11.3360 -1.0218 35 1 0.9039 -7.2992 -1.1706 36 1 2.2783 -8.2029 -0.4899 37 1 2.9469 -5.9105 -1.2002 38 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852128936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:28 Heat of formation + Delta-G solvation = 7.255269 kcal Electronic energy + Delta-G solvation = -21348.041639 eV Core-core repulsion = 17946.832966 eV Total energy + Delta-G solvation = -3401.208673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.31258 -42.34281 -40.27462 -37.45172 -35.19566 -34.03811 -33.02869 -31.95585 -31.35050 -28.15977 -26.06990 -25.76952 -24.36350 -24.03197 -22.15347 -21.03428 -19.57259 -19.29737 -18.52653 -17.47744 -17.30451 -16.75095 -16.54816 -16.26928 -16.17278 -16.08666 -15.60136 -15.50006 -15.18346 -14.84659 -14.65982 -14.24401 -14.15137 -13.33539 -13.13985 -12.86486 -12.58712 -12.39999 -12.34407 -12.15617 -12.07829 -11.79985 -11.71865 -11.26182 -11.19543 -10.96984 -10.66216 -10.52805 -9.73880 -9.23667 -8.19117 -6.29481 -0.30659 -0.24558 1.41207 1.41988 1.54643 2.01321 2.26096 2.41093 2.54797 2.99038 3.04224 3.14926 3.41221 3.74212 3.83269 3.95021 4.00346 4.14368 4.19796 4.33680 4.44536 4.51971 4.56499 4.66217 4.74463 4.84470 4.89457 4.97290 5.09418 5.15609 5.26391 5.47196 5.66177 5.73734 5.80534 5.81892 6.08523 6.23441 6.32287 6.85642 6.87949 7.39584 8.92926 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.038899 B = 0.003049 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.642525 B = 9180.426322 C = 9615.871150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.081 3.919 11 N -0.553 5.553 12 C 0.057 3.943 13 C 0.073 3.927 14 N -0.475 5.475 15 C 0.380 3.620 16 C -0.265 4.265 17 C 0.363 3.637 18 F -0.102 7.102 19 N -0.591 5.591 20 C 0.362 3.638 21 N -0.572 5.572 22 C 0.080 3.920 23 C 0.054 3.946 24 H 0.263 0.737 25 H -0.002 1.002 26 H -0.008 1.008 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.176 0.824 34 H 0.243 0.757 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -20.549 2.273 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.046 4.046 11 N -0.278 5.278 12 C -0.071 4.071 13 C -0.052 4.052 14 N -0.191 5.191 15 C 0.140 3.860 16 C -0.292 4.292 17 C 0.204 3.796 18 F -0.081 7.081 19 N -0.314 5.314 20 C 0.074 3.926 21 N -0.293 5.293 22 C -0.047 4.047 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.194 0.806 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.471 -20.919 1.560 20.982 hybrid contribution 0.037 1.460 1.102 1.829 sum 0.508 -19.459 2.661 19.647 Atomic orbital electron populations 1.70105 1.07717 1.27631 1.51595 1.25920 0.95724 1.03181 0.94764 0.85425 0.79118 0.78943 0.77702 1.18595 1.20517 1.20462 1.21659 0.93527 0.92310 1.50585 0.92229 1.18925 0.94218 0.91780 0.95219 1.21954 0.95364 0.87946 0.99357 1.62207 1.28407 1.02576 1.34638 1.22147 0.97563 0.96620 0.90798 1.22386 0.92883 0.86755 1.03224 1.58988 1.24111 1.00360 1.35684 1.20055 0.86049 0.91705 0.88176 1.22136 1.04302 0.99493 1.03244 1.18222 0.87939 0.89321 0.84103 1.91667 1.72399 1.90540 1.53498 1.67920 1.24559 1.36616 1.02301 1.25389 0.83559 0.89117 0.94573 1.68521 1.26324 1.07882 1.26591 1.22080 0.97097 0.97603 0.87893 1.22288 0.93995 0.89149 1.02015 0.92822 0.98370 0.98929 0.91559 0.95882 0.93820 0.90479 0.92870 0.86909 0.80646 0.74107 0.92564 0.87973 0.88829 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.85 4.91 29.85 0.15 2.00 16 10 C 0.08 3.25 4.90 86.30 0.42 3.67 16 11 N -0.55 -18.55 4.71 -895.72 -4.22 -22.77 16 12 C 0.06 1.74 5.41 86.31 0.47 2.20 16 13 C 0.07 1.74 5.38 86.31 0.46 2.20 16 14 N -0.47 -10.88 4.73 -700.91 -3.32 -14.20 16 15 C 0.38 8.20 6.40 133.09 0.85 9.05 16 16 C -0.27 -5.09 9.29 22.62 0.21 -4.88 16 17 C 0.36 7.51 8.50 84.60 0.72 8.23 16 18 F -0.10 -2.10 17.30 44.97 0.78 -1.32 16 19 N -0.59 -12.21 10.45 -201.32 -2.10 -14.32 16 20 C 0.36 6.17 12.28 180.90 2.22 8.39 16 21 N -0.57 -11.76 8.87 -197.69 -1.75 -13.51 16 22 C 0.08 1.85 4.80 86.31 0.41 2.26 16 23 C 0.05 1.41 5.61 86.31 0.48 1.89 16 24 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 25 H 0.00 -0.11 6.49 -2.38 -0.02 -0.12 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.07 2.60 8.03 -2.38 -0.02 2.58 16 28 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 2.71 6.34 -2.39 -0.02 2.69 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 2.12 6.87 -2.39 -0.02 2.10 16 33 H 0.18 2.69 7.27 -2.91 -0.02 2.67 16 34 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 36 H 0.10 2.12 7.84 -2.39 -0.02 2.10 16 37 H 0.09 2.28 8.07 -2.39 -0.02 2.26 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.06 316.03 -0.15 -65.21 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.06 Total: 5.17 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 7.10 Total: 5.62 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -11.11 Total: -120.27 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.06 -0.15 -65.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852128936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.464 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds