Wall clock time and date at job start Tue Mar 31 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00188 * 2 1 4 4 H 1.48503 * 109.47234 * 239.99709 * 3 2 1 5 5 H 1.48502 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47628 * 119.99556 * 3 2 1 7 7 C 1.38815 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99817 * 163.08157 * 7 2 1 9 9 N 1.36936 * 120.00326 * 343.08759 * 7 2 1 10 10 C 1.46928 * 120.62710 * 331.84055 * 9 7 2 11 11 C 1.53188 * 108.77467 * 233.58539 * 10 9 7 12 12 C 1.53038 * 109.31490 * 305.36443 * 11 10 9 13 13 C 1.53001 * 109.46281 * 181.38441 * 12 11 10 14 14 N 1.46497 * 109.47029 * 175.00019 * 13 12 11 15 15 C 1.38579 * 119.99847 * 179.97438 * 14 13 12 16 16 C 1.39457 * 120.51171 * 0.02562 * 15 14 13 17 17 C 1.38473 * 118.30900 * 179.97438 * 16 15 14 18 18 F 1.35099 * 120.43106 * 179.97438 * 17 16 15 19 19 N 1.32784 * 119.13776 * 0.02562 * 17 16 15 20 20 C 1.31760 * 120.96566 * 359.97438 * 19 17 16 21 21 N 1.31757 * 121.85942 * 0.02562 * 20 19 17 22 22 C 1.53038 * 109.53697 * 61.36423 * 12 11 10 23 23 C 1.46926 * 120.63548 * 151.81685 * 9 7 2 24 24 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58720 * 113.79865 * 10 9 7 26 26 H 1.08999 * 109.70748 * 353.44465 * 10 9 7 27 27 H 1.09002 * 109.49772 * 185.41848 * 11 10 9 28 28 H 1.08997 * 109.52841 * 65.33539 * 11 10 9 29 29 H 1.09008 * 109.46372 * 301.36049 * 12 11 10 30 30 H 1.09003 * 109.46823 * 55.00211 * 13 12 11 31 31 H 1.08995 * 109.47181 * 295.00563 * 13 12 11 32 32 H 0.96996 * 120.00311 * 0.02562 * 14 13 12 33 33 H 1.07998 * 120.84858 * 359.70502 * 16 15 14 34 34 H 1.08001 * 119.06905 * 179.97438 * 20 19 17 35 35 H 1.09005 * 109.49912 * 58.58922 * 22 12 11 36 36 H 1.08998 * 109.50320 * 178.68248 * 22 12 11 37 37 H 1.08999 * 109.58714 * 246.20795 * 23 9 7 38 38 H 1.09003 * 109.58322 * 6.48680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3460 10 6 0.2259 -2.3400 1.2676 11 6 0.4971 -3.3192 2.4140 12 6 0.8116 -4.7008 1.8359 13 6 1.0492 -5.6897 2.9790 14 7 1.2322 -7.0356 2.4302 15 6 1.4639 -8.1050 3.2805 16 6 1.5245 -7.9122 4.6604 17 6 1.7578 -9.0128 5.4676 18 9 1.8254 -8.8750 6.8099 19 7 1.9154 -10.2053 4.9052 20 6 1.8521 -10.3518 3.5973 21 7 1.6320 -9.3316 2.7932 22 6 2.0671 -4.6174 0.9648 23 6 1.8137 -3.6529 -0.1981 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6772 -2.6405 0.7363 26 1 0.0965 -1.3348 1.6686 27 1 -0.3836 -3.3842 3.0530 28 1 1.3465 -2.9680 2.9999 29 1 -0.0284 -5.0410 1.2302 30 1 0.1892 -5.6842 3.6487 31 1 1.9421 -5.3983 3.5319 32 1 1.1919 -7.1782 1.4716 33 1 1.3970 -6.9288 5.0882 34 1 1.9851 -11.3357 3.1724 35 1 2.9021 -4.2537 1.5638 36 1 2.3040 -5.6063 0.5722 37 1 1.0402 -4.0604 -0.8490 38 1 2.7332 -3.5131 -0.7666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853440254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:31 Heat of formation + Delta-G solvation = 23.569653 kcal Electronic energy + Delta-G solvation = -21326.473149 eV Core-core repulsion = 17925.971921 eV Total energy + Delta-G solvation = -3400.501228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.34220 -41.03440 -38.41889 -36.32567 -33.78298 -32.74314 -31.35667 -30.52511 -29.67441 -26.99954 -24.91781 -24.03407 -23.22206 -22.15808 -21.19969 -19.38004 -18.71030 -18.39457 -16.83966 -16.47907 -15.95254 -15.77780 -15.48729 -15.06130 -14.82109 -14.46776 -14.13701 -13.93840 -13.69263 -13.58663 -13.31770 -12.64004 -12.43693 -12.22998 -11.49374 -11.26371 -11.02331 -11.00221 -10.76569 -10.60811 -10.35642 -10.30041 -10.03599 -9.96918 -9.68195 -9.63157 -9.56823 -8.52505 -8.45683 -6.73505 -5.84697 -3.27401 0.65591 1.01572 2.71595 3.19578 3.34674 3.40737 3.41823 3.53647 3.98687 4.44003 4.44967 4.80246 4.84411 4.98418 5.04127 5.21644 5.31822 5.33622 5.47944 5.59684 5.66993 5.86390 5.96663 6.07384 6.21127 6.34727 6.35628 6.48099 6.54598 6.63950 6.71329 6.86401 6.92410 7.25616 7.28883 7.57802 7.74048 7.90061 8.39520 9.15805 9.78961 10.35422 11.23938 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.003114 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.628798 B = 8988.426923 C = 9279.303010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.089 4.089 13 C 0.121 3.879 14 N -0.694 5.694 15 C 0.463 3.537 16 C -0.320 4.320 17 C 0.382 3.618 18 F -0.104 7.104 19 N -0.599 5.599 20 C 0.375 3.625 21 N -0.586 5.586 22 C -0.128 4.128 23 C 0.145 3.855 24 H 0.255 0.745 25 H 0.018 0.982 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.154 0.846 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -15.780 7.693 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.108 4.108 13 C -0.002 4.002 14 N -0.323 5.323 15 C 0.218 3.782 16 C -0.350 4.350 17 C 0.224 3.776 18 F -0.083 7.083 19 N -0.326 5.326 20 C 0.085 3.915 21 N -0.312 5.312 22 C -0.167 4.167 23 C 0.018 3.982 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.251 0.749 33 H 0.171 0.829 34 H 0.222 0.778 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.438 -16.202 7.434 17.884 hybrid contribution 0.294 1.610 0.309 1.665 sum 1.732 -14.593 7.743 16.610 Atomic orbital electron populations 1.70013 1.05276 1.25694 1.53764 1.25047 0.95290 0.98448 1.00770 0.86366 0.78929 0.83286 0.78168 1.20868 1.21602 1.20997 1.19146 0.92551 0.84842 1.41942 0.91755 1.44044 1.35878 1.01533 1.50038 1.20753 0.88675 0.98127 0.87861 1.22193 1.00371 0.94440 1.00252 1.21306 0.99185 0.95113 0.95194 1.21865 1.01286 0.79430 0.97660 1.44837 1.73554 1.04900 1.09036 1.18341 0.85431 0.87106 0.87296 1.21807 1.18231 1.01392 0.93539 1.17991 0.91261 0.89681 0.78627 1.91650 1.92514 1.95734 1.28413 1.67830 1.24445 1.24882 1.15409 1.24493 0.86599 0.97425 0.82983 1.68032 1.23484 0.98788 1.40903 1.22085 0.96766 0.98955 0.98934 1.20886 0.97669 0.86967 0.92643 0.93530 0.96399 0.89322 0.92975 0.92291 0.90966 0.91445 0.91279 0.74920 0.82861 0.77795 0.92112 0.93310 0.96538 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.19 55.49 0.62 -24.92 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.14 2.99 -172.32 -0.52 -14.66 16 10 C 0.17 3.83 5.30 -3.71 -0.02 3.81 16 11 C -0.13 -2.22 5.36 -26.61 -0.14 -2.36 16 12 C -0.09 -1.24 2.19 -90.58 -0.20 -1.44 16 13 C 0.12 1.35 4.32 -4.04 -0.02 1.33 16 14 N -0.69 -7.58 5.43 -60.29 -0.33 -7.91 16 15 C 0.46 5.39 7.71 -154.76 -1.19 4.20 16 16 C -0.32 -3.56 9.39 -39.04 -0.37 -3.93 16 17 C 0.38 4.56 8.50 -17.05 -0.14 4.41 16 18 F -0.10 -1.23 17.30 2.25 0.04 -1.19 16 19 N -0.60 -7.13 10.45 -14.98 -0.16 -7.29 16 20 C 0.37 3.79 12.28 -92.22 -1.13 2.66 16 21 N -0.59 -6.77 10.47 -13.84 -0.14 -6.92 16 22 C -0.13 -1.96 5.25 -26.61 -0.14 -2.10 16 23 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 2.25 6.07 -51.93 -0.31 1.93 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 0.69 7.98 -51.93 -0.41 0.28 16 31 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 32 H 0.41 4.41 7.77 -40.82 -0.32 4.09 16 33 H 0.15 1.48 6.86 -52.49 -0.36 1.12 16 34 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 314.87 15.07 4.74 4.74 Total: -1.00 -29.41 314.87 -9.49 -38.90 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.11 Total: 0.62 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.61 Total: 2.45 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.52 Total: -61.70 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.41 -9.49 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853440254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.466 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds