Wall clock time and date at job start Tue Mar 31 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00188 * 2 1 4 4 H 1.48503 * 109.47234 * 239.99709 * 3 2 1 5 5 H 1.48502 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47628 * 119.99556 * 3 2 1 7 7 C 1.38815 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99817 * 163.08157 * 7 2 1 9 9 N 1.36936 * 120.00326 * 343.08759 * 7 2 1 10 10 C 1.46928 * 120.62710 * 331.84055 * 9 7 2 11 11 C 1.53188 * 108.77467 * 233.58539 * 10 9 7 12 12 C 1.53038 * 109.31490 * 305.36443 * 11 10 9 13 13 C 1.53001 * 109.46281 * 181.38441 * 12 11 10 14 14 N 1.46497 * 109.47029 * 175.00019 * 13 12 11 15 15 C 1.38579 * 119.99847 * 179.97438 * 14 13 12 16 16 C 1.39457 * 120.51171 * 0.02562 * 15 14 13 17 17 C 1.38473 * 118.30900 * 179.97438 * 16 15 14 18 18 F 1.35099 * 120.43106 * 179.97438 * 17 16 15 19 19 N 1.32784 * 119.13776 * 0.02562 * 17 16 15 20 20 C 1.31760 * 120.96566 * 359.97438 * 19 17 16 21 21 N 1.31757 * 121.85942 * 0.02562 * 20 19 17 22 22 C 1.53038 * 109.53697 * 61.36423 * 12 11 10 23 23 C 1.46926 * 120.63548 * 151.81685 * 9 7 2 24 24 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58720 * 113.79865 * 10 9 7 26 26 H 1.08999 * 109.70748 * 353.44465 * 10 9 7 27 27 H 1.09002 * 109.49772 * 185.41848 * 11 10 9 28 28 H 1.08997 * 109.52841 * 65.33539 * 11 10 9 29 29 H 1.09008 * 109.46372 * 301.36049 * 12 11 10 30 30 H 1.09003 * 109.46823 * 55.00211 * 13 12 11 31 31 H 1.08995 * 109.47181 * 295.00563 * 13 12 11 32 32 H 0.96996 * 120.00311 * 0.02562 * 14 13 12 33 33 H 1.07998 * 120.84858 * 359.70502 * 16 15 14 34 34 H 1.08001 * 119.06905 * 179.97438 * 20 19 17 35 35 H 1.09005 * 109.49912 * 58.58922 * 22 12 11 36 36 H 1.08998 * 109.50320 * 178.68248 * 22 12 11 37 37 H 1.08999 * 109.58714 * 246.20795 * 23 9 7 38 38 H 1.09003 * 109.58322 * 6.48680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3460 10 6 0.2259 -2.3400 1.2676 11 6 0.4971 -3.3192 2.4140 12 6 0.8116 -4.7008 1.8359 13 6 1.0492 -5.6897 2.9790 14 7 1.2322 -7.0356 2.4302 15 6 1.4639 -8.1050 3.2805 16 6 1.5245 -7.9122 4.6604 17 6 1.7578 -9.0128 5.4676 18 9 1.8254 -8.8750 6.8099 19 7 1.9154 -10.2053 4.9052 20 6 1.8521 -10.3518 3.5973 21 7 1.6320 -9.3316 2.7932 22 6 2.0671 -4.6174 0.9648 23 6 1.8137 -3.6529 -0.1981 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6772 -2.6405 0.7363 26 1 0.0965 -1.3348 1.6686 27 1 -0.3836 -3.3842 3.0530 28 1 1.3465 -2.9680 2.9999 29 1 -0.0284 -5.0410 1.2302 30 1 0.1892 -5.6842 3.6487 31 1 1.9421 -5.3983 3.5319 32 1 1.1919 -7.1782 1.4716 33 1 1.3970 -6.9288 5.0882 34 1 1.9851 -11.3357 3.1724 35 1 2.9021 -4.2537 1.5638 36 1 2.3040 -5.6063 0.5722 37 1 1.0402 -4.0604 -0.8490 38 1 2.7332 -3.5131 -0.7666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853440254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:30 Heat of formation + Delta-G solvation = 6.651449 kcal Electronic energy + Delta-G solvation = -21327.206777 eV Core-core repulsion = 17925.971921 eV Total energy + Delta-G solvation = -3401.234857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.21154 -41.85931 -39.71401 -37.50551 -35.21123 -33.82641 -32.76847 -31.79593 -31.12848 -28.36621 -26.17323 -25.21057 -24.31042 -23.58303 -22.57304 -20.78325 -19.66725 -19.25426 -18.65379 -17.34672 -16.90985 -16.83073 -16.58900 -16.29410 -15.98210 -15.58245 -15.31605 -15.29732 -15.01880 -14.79518 -14.66735 -13.96614 -13.89390 -13.69141 -13.04160 -12.88104 -12.55124 -12.32482 -12.14698 -12.00681 -11.86580 -11.79385 -11.58348 -11.19276 -11.10033 -10.83219 -10.53962 -10.50946 -9.29360 -8.67015 -7.87829 -5.32866 -0.15878 0.17297 1.46861 1.48642 1.55485 1.86158 2.37596 2.51235 2.72170 3.24931 3.26934 3.62013 3.70426 3.79335 3.91580 4.01695 4.08749 4.20273 4.49951 4.52936 4.60304 4.65357 4.69094 4.77058 4.94410 5.00553 5.12009 5.24545 5.28737 5.30656 5.41286 5.53949 5.55453 5.66098 5.79892 6.04974 6.39673 6.43856 7.09286 7.16028 7.88198 8.38310 9.18001 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.003114 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.628798 B = 8988.426923 C = 9279.303010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.175 3.825 11 C -0.120 4.120 12 C -0.079 4.079 13 C 0.134 3.866 14 N -0.690 5.690 15 C 0.457 3.543 16 C -0.319 4.319 17 C 0.370 3.630 18 F -0.108 7.108 19 N -0.616 5.616 20 C 0.376 3.624 21 N -0.598 5.598 22 C -0.114 4.114 23 C 0.138 3.862 24 H 0.250 0.750 25 H -0.005 1.005 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.013 0.987 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -17.269 8.446 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.049 3.951 11 C -0.160 4.160 12 C -0.098 4.098 13 C 0.010 3.990 14 N -0.321 5.321 15 C 0.211 3.789 16 C -0.349 4.349 17 C 0.212 3.788 18 F -0.087 7.087 19 N -0.343 5.343 20 C 0.087 3.913 21 N -0.324 5.324 22 C -0.153 4.153 23 C 0.013 3.987 24 H 0.059 0.941 25 H 0.013 0.987 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.185 0.815 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.199 -17.728 8.191 19.652 hybrid contribution 0.062 2.010 0.011 2.011 sum 2.261 -15.718 8.203 17.873 Atomic orbital electron populations 1.70167 1.06596 1.25894 1.55373 1.25765 0.96022 1.01404 1.01289 0.85385 0.77615 0.79399 0.78314 1.20305 1.22042 1.20360 1.19474 0.92782 0.86243 1.41050 0.91864 1.44335 1.36028 1.02278 1.50931 1.20591 0.87600 0.97743 0.89118 1.21962 1.01381 0.94492 0.98134 1.21127 0.98453 0.94302 0.95935 1.21657 1.02397 0.78698 0.96248 1.44721 1.73629 1.04621 1.09080 1.18451 0.85592 0.87318 0.87510 1.21911 1.17832 1.01803 0.93308 1.18186 0.91761 0.90166 0.78673 1.91638 1.92594 1.95780 1.28674 1.67883 1.25035 1.25084 1.16290 1.25217 0.85253 0.98444 0.82382 1.68089 1.23922 0.99058 1.41318 1.21914 0.97220 0.98937 0.97261 1.21064 0.97048 0.86190 0.94399 0.94111 0.98684 0.93026 0.90598 0.92488 0.90925 0.89829 0.90554 0.74688 0.81461 0.74392 0.92611 0.90400 0.96888 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 11.19 21.65 0.24 -54.18 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 3 Si 0.96 44.20 29.59 68.60 2.03 46.23 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.27 -14.34 9.58 84.03 0.81 -13.54 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.55 2.99 -699.10 -2.09 -31.64 16 10 C 0.18 7.94 5.30 86.36 0.46 8.40 16 11 C -0.12 -3.84 5.36 30.67 0.16 -3.67 16 12 C -0.08 -2.01 2.19 -10.77 -0.02 -2.04 16 13 C 0.13 2.50 4.32 86.38 0.37 2.87 16 14 N -0.69 -12.87 5.43 -344.67 -1.87 -14.74 16 15 C 0.46 9.35 7.71 133.09 1.03 10.37 16 16 C -0.32 -6.29 9.39 22.62 0.21 -6.07 16 17 C 0.37 8.14 8.50 84.61 0.72 8.86 16 18 F -0.11 -2.39 17.30 44.97 0.78 -1.62 16 19 N -0.62 -13.48 10.45 -201.32 -2.10 -15.59 16 20 C 0.38 6.68 12.28 180.91 2.22 8.90 16 21 N -0.60 -12.26 10.47 -197.70 -2.07 -14.33 16 22 C -0.11 -3.25 5.25 30.67 0.16 -3.09 16 23 C 0.14 5.36 6.52 86.36 0.56 5.92 16 24 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.08 1.37 7.98 -2.39 -0.02 1.35 16 31 H 0.08 1.39 7.97 -2.39 -0.02 1.37 16 32 H 0.42 7.51 7.77 -92.71 -0.72 6.79 16 33 H 0.17 2.71 6.86 -2.91 -0.02 2.69 16 34 H 0.24 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 1.79 7.15 -2.39 -0.02 1.77 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 Total: -1.00 -64.66 314.87 2.37 -62.29 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.36 Total: 8.96 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.10 Total: 14.62 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -7.89 Total: -130.48 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.66 2.37 -62.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853440254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.940 kcal (2) G-P(sol) polarization free energy of solvation -64.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds