Wall clock time and date at job start Tue Mar 31 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.53006 * 109.46632 * 240.00507 * 2 1 3 5 5 C 1.50700 * 109.47267 * 65.00042 * 4 2 1 6 6 O 1.20831 * 119.99672 * 359.97438 * 5 4 2 7 7 O 1.34223 * 119.99966 * 179.97438 * 5 4 2 8 8 C 1.45204 * 117.00054 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47409 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47070 * 300.00212 * 9 8 7 11 11 C 1.52997 * 109.46994 * 60.00087 * 9 8 7 12 12 C 1.50700 * 109.47184 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00179 * 356.86245 * 12 9 8 14 14 C 1.37878 * 119.99777 * 176.86377 * 12 9 8 15 15 N 1.31512 * 120.00476 * 5.81763 * 14 12 9 16 16 Si 1.86804 * 119.99809 * 185.82014 * 14 12 9 17 17 H 1.48492 * 109.47386 * 85.02321 * 16 14 12 18 18 H 1.48497 * 109.47079 * 205.02573 * 16 14 12 19 19 H 1.48499 * 109.47143 * 325.02096 * 16 14 12 20 20 C 1.50696 * 109.47491 * 120.00787 * 2 1 3 21 21 C 1.34509 * 125.79000 * 239.71535 * 20 2 1 22 22 C 1.41385 * 106.84536 * 179.88787 * 21 20 2 23 23 C 1.34522 * 106.83480 * 0.36988 * 22 21 20 24 24 O 1.34304 * 108.42156 * 359.77258 * 23 22 21 25 25 H 1.08993 * 109.47449 * 59.99415 * 1 2 3 26 26 H 1.09003 * 109.46790 * 299.99274 * 1 2 3 27 27 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46916 * 184.99745 * 4 2 1 29 29 H 1.08992 * 109.47333 * 304.99890 * 4 2 1 30 30 H 1.09000 * 109.47295 * 300.00099 * 8 7 5 31 31 H 1.09002 * 109.47217 * 59.99729 * 8 7 5 32 32 H 1.09000 * 109.47277 * 53.82525 * 10 9 8 33 33 H 1.09001 * 109.46694 * 173.82856 * 10 9 8 34 34 H 1.09000 * 109.46981 * 293.82042 * 10 9 8 35 35 H 1.09000 * 109.47037 * 60.00249 * 11 9 8 36 36 H 1.09010 * 109.47151 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.47337 * 299.99767 * 11 9 8 38 38 H 0.96999 * 120.00295 * 179.97438 * 15 14 12 39 39 H 1.08005 * 126.57699 * 0.02562 * 21 20 2 40 40 H 1.07997 * 126.58080 * 180.16862 * 22 21 20 41 41 H 1.07998 * 125.78496 * 179.75368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 8 1.0132 1.0833 -2.3636 7 8 1.9837 -0.3893 -3.6952 8 6 1.5656 0.4112 -4.8322 9 6 2.0440 -0.2510 -6.1258 10 6 3.5703 -0.3569 -6.1103 11 6 1.4368 -1.6509 -6.2369 12 6 1.6095 0.5795 -7.3058 13 1 1.0051 1.4613 -7.1523 14 6 1.9835 0.2136 -8.5814 15 7 2.6209 -0.9194 -8.7804 16 14 1.5849 1.3273 -10.0273 17 1 2.6454 2.3575 -10.1657 18 1 1.5153 0.5184 -11.2706 19 1 0.2771 1.9913 -9.7949 20 6 2.0324 -0.7105 1.2303 21 6 2.8135 -0.1738 2.1849 22 6 3.0389 -1.1854 3.1466 23 6 2.3888 -2.2823 2.7179 24 8 1.7810 -1.9888 1.5568 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7994 -1.2058 29 1 1.6053 -1.7197 -1.2954 30 1 0.4783 0.4870 -4.8430 31 1 1.9985 1.4085 -4.7533 32 1 3.8901 -0.8633 -5.1996 33 1 3.9038 -0.9253 -6.9785 34 1 4.0041 0.6425 -6.1419 35 1 0.3494 -1.5754 -6.2479 36 1 1.7780 -2.1229 -7.1583 37 1 1.7507 -2.2519 -5.3834 38 1 2.8837 -1.1770 -9.6779 39 1 3.1934 0.8368 2.2126 40 1 3.6237 -1.0957 4.0500 41 1 2.3608 -3.2371 3.2218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860658508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:56 Heat of formation + Delta-G solvation = -90.787676 kcal Electronic energy + Delta-G solvation = -21840.378849 eV Core-core repulsion = 18493.793517 eV Total energy + Delta-G solvation = -3346.585331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.75105 -40.07594 -36.97633 -35.26189 -34.71955 -33.08820 -31.29414 -29.27881 -28.18421 -25.64325 -25.62147 -25.04290 -23.24181 -21.93255 -20.79011 -19.81751 -18.84858 -17.70852 -16.94276 -16.20545 -16.13212 -15.79498 -15.69834 -14.78974 -14.64309 -14.22017 -13.43747 -13.27641 -13.03157 -12.98861 -12.85847 -12.69284 -12.39869 -11.79203 -11.69724 -11.43678 -11.39737 -11.16470 -11.12506 -10.93626 -10.70642 -10.41103 -10.22029 -10.08803 -9.99865 -9.87941 -9.40493 -9.31093 -8.76511 -8.63329 -8.37014 -6.02839 -4.13229 1.56132 2.44082 2.59167 2.80978 3.23570 3.28238 3.34728 3.39112 4.37359 4.49300 4.57440 4.79598 4.85854 4.95655 5.17794 5.23978 5.40890 5.51459 5.53703 5.61714 5.71795 5.81715 5.93095 5.98360 6.08027 6.10662 6.25576 6.32100 6.46684 6.76242 6.98234 6.98692 7.08114 7.12661 7.16108 7.40605 7.62438 7.70477 8.03336 8.14409 8.24791 8.38915 8.86495 9.51970 10.99042 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.003093 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.688496 B = 9050.778183 C = 9288.828603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.004 3.996 3 H 0.110 0.890 4 C -0.114 4.114 5 C 0.457 3.543 6 O -0.518 6.518 7 O -0.348 6.348 8 C 0.084 3.916 9 C 0.070 3.930 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.001 3.999 21 C -0.211 4.211 22 C -0.214 4.214 23 C -0.045 4.045 24 O -0.172 6.172 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -2.305 20.016 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 H 0.128 0.872 4 C -0.152 4.152 5 C 0.300 3.700 6 O -0.409 6.409 7 O -0.264 6.264 8 C 0.012 3.988 9 C 0.069 3.931 10 C -0.186 4.186 11 C -0.187 4.187 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.519 5.519 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.049 4.049 21 C -0.230 4.230 22 C -0.234 4.234 23 C -0.113 4.113 24 O -0.068 6.068 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.072 -2.310 19.654 19.789 hybrid contribution -0.039 0.792 -0.545 0.962 sum 0.034 -1.518 19.109 19.169 Atomic orbital electron populations 1.22010 0.92889 1.02594 1.03811 1.19585 0.97399 0.98072 0.86403 0.87241 1.21434 1.04131 1.00447 0.89151 1.23368 0.76625 0.84120 0.85885 1.90596 1.37899 1.24813 1.87576 1.86523 1.71438 1.53397 1.14998 1.23659 0.98828 0.93568 0.82767 1.18241 0.93362 0.93597 0.87857 1.21747 0.97246 0.99478 1.00096 1.21792 0.97955 0.97827 1.01122 1.20926 1.33485 1.10428 0.90408 0.92504 1.24853 0.94878 0.94952 0.98569 1.69850 1.39661 1.20793 1.21624 0.86570 0.78840 0.80625 0.81733 1.20551 1.21215 1.19961 1.22398 1.01101 0.82616 0.98820 1.21627 1.03977 1.01434 0.96005 1.21827 1.05576 0.93656 1.02295 1.24032 0.99341 1.00874 0.87045 1.84019 1.59392 1.28035 1.35340 0.89585 0.92268 0.92427 0.87551 0.87405 0.92531 0.92500 0.96402 0.90147 0.95579 0.95848 0.89737 0.96517 0.92893 0.83455 0.83560 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.92 37.16 0.33 -1.48 16 2 C 0.00 0.04 2.44 -91.77 -0.22 -0.18 16 3 H 0.11 1.24 7.91 -51.93 -0.41 0.83 16 4 C -0.11 -1.42 5.27 -27.88 -0.15 -1.57 16 5 C 0.46 7.66 7.68 36.01 0.28 7.93 16 6 O -0.52 -9.62 13.72 -18.75 -0.26 -9.87 16 7 O -0.35 -6.83 8.77 -39.24 -0.34 -7.17 16 8 C 0.08 1.86 4.26 37.15 0.16 2.02 16 9 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 10 C -0.13 -3.08 8.06 37.16 0.30 -2.78 16 11 C -0.13 -3.12 8.14 37.16 0.30 -2.81 16 12 C -0.51 -13.75 8.01 -34.44 -0.28 -14.03 16 13 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 14 C 0.07 1.85 5.13 -17.82 -0.09 1.76 16 15 N -0.88 -23.98 9.46 55.43 0.52 -23.46 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.00 0.01 5.83 -35.63 -0.21 -0.20 16 21 C -0.21 -2.18 10.78 -39.70 -0.43 -2.61 16 22 C -0.21 -1.95 10.91 -39.70 -0.43 -2.38 16 23 C -0.05 -0.40 12.09 29.42 0.36 -0.04 16 24 O -0.17 -1.93 10.65 5.70 0.06 -1.87 16 25 H 0.09 1.17 5.96 -51.93 -0.31 0.86 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.02 0.38 7.50 -51.93 -0.39 -0.01 16 33 H 0.08 2.08 6.25 -51.93 -0.32 1.76 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 2.21 6.11 -51.92 -0.32 1.89 16 37 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 38 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -29.18 338.31 -6.46 -35.64 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.34 Total: 0.59 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.17 Total: -14.75 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.52 Total: -23.46 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.54 Total: -18.92 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.18 -6.46 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860658508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.148 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds