Wall clock time and date at job start Tue Mar 31 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.53006 * 109.46632 * 240.00507 * 2 1 3 5 5 C 1.50700 * 109.47267 * 65.00042 * 4 2 1 6 6 O 1.20831 * 119.99672 * 359.97438 * 5 4 2 7 7 O 1.34223 * 119.99966 * 179.97438 * 5 4 2 8 8 C 1.45204 * 117.00054 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47409 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47070 * 300.00212 * 9 8 7 11 11 C 1.52997 * 109.46994 * 60.00087 * 9 8 7 12 12 C 1.50700 * 109.47184 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00179 * 356.86245 * 12 9 8 14 14 C 1.37878 * 119.99777 * 176.86377 * 12 9 8 15 15 N 1.31512 * 120.00476 * 5.81763 * 14 12 9 16 16 Si 1.86804 * 119.99809 * 185.82014 * 14 12 9 17 17 H 1.48492 * 109.47386 * 85.02321 * 16 14 12 18 18 H 1.48497 * 109.47079 * 205.02573 * 16 14 12 19 19 H 1.48499 * 109.47143 * 325.02096 * 16 14 12 20 20 C 1.50696 * 109.47491 * 120.00787 * 2 1 3 21 21 C 1.34509 * 125.79000 * 239.71535 * 20 2 1 22 22 C 1.41385 * 106.84536 * 179.88787 * 21 20 2 23 23 C 1.34522 * 106.83480 * 0.36988 * 22 21 20 24 24 O 1.34304 * 108.42156 * 359.77258 * 23 22 21 25 25 H 1.08993 * 109.47449 * 59.99415 * 1 2 3 26 26 H 1.09003 * 109.46790 * 299.99274 * 1 2 3 27 27 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46916 * 184.99745 * 4 2 1 29 29 H 1.08992 * 109.47333 * 304.99890 * 4 2 1 30 30 H 1.09000 * 109.47295 * 300.00099 * 8 7 5 31 31 H 1.09002 * 109.47217 * 59.99729 * 8 7 5 32 32 H 1.09000 * 109.47277 * 53.82525 * 10 9 8 33 33 H 1.09001 * 109.46694 * 173.82856 * 10 9 8 34 34 H 1.09000 * 109.46981 * 293.82042 * 10 9 8 35 35 H 1.09000 * 109.47037 * 60.00249 * 11 9 8 36 36 H 1.09010 * 109.47151 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.47337 * 299.99767 * 11 9 8 38 38 H 0.96999 * 120.00295 * 179.97438 * 15 14 12 39 39 H 1.08005 * 126.57699 * 0.02562 * 21 20 2 40 40 H 1.07997 * 126.58080 * 180.16862 * 22 21 20 41 41 H 1.07998 * 125.78496 * 179.75368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 8 1.0132 1.0833 -2.3636 7 8 1.9837 -0.3893 -3.6952 8 6 1.5656 0.4112 -4.8322 9 6 2.0440 -0.2510 -6.1258 10 6 3.5703 -0.3569 -6.1103 11 6 1.4368 -1.6509 -6.2369 12 6 1.6095 0.5795 -7.3058 13 1 1.0051 1.4613 -7.1523 14 6 1.9835 0.2136 -8.5814 15 7 2.6209 -0.9194 -8.7804 16 14 1.5849 1.3273 -10.0273 17 1 2.6454 2.3575 -10.1657 18 1 1.5153 0.5184 -11.2706 19 1 0.2771 1.9913 -9.7949 20 6 2.0324 -0.7105 1.2303 21 6 2.8135 -0.1738 2.1849 22 6 3.0389 -1.1854 3.1466 23 6 2.3888 -2.2823 2.7179 24 8 1.7810 -1.9888 1.5568 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7994 -1.2058 29 1 1.6053 -1.7197 -1.2954 30 1 0.4783 0.4870 -4.8430 31 1 1.9985 1.4085 -4.7533 32 1 3.8901 -0.8633 -5.1996 33 1 3.9038 -0.9253 -6.9785 34 1 4.0041 0.6425 -6.1419 35 1 0.3494 -1.5754 -6.2479 36 1 1.7780 -2.1229 -7.1583 37 1 1.7507 -2.2519 -5.3834 38 1 2.8837 -1.1770 -9.6779 39 1 3.1934 0.8368 2.2126 40 1 3.6237 -1.0957 4.0500 41 1 2.3608 -3.2371 3.2218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860658508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:56 Heat of formation + Delta-G solvation = -104.475454 kcal Electronic energy + Delta-G solvation = -21840.972395 eV Core-core repulsion = 18493.793517 eV Total energy + Delta-G solvation = -3347.178878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.48817 -41.50430 -38.54471 -36.77069 -36.05557 -33.81613 -33.27879 -30.21380 -29.14230 -27.57260 -27.45975 -26.91774 -24.23165 -22.67774 -21.98540 -20.74271 -20.69714 -18.86682 -18.03281 -17.67765 -17.51524 -17.30456 -16.85497 -16.54406 -15.64036 -15.39242 -14.90277 -14.79395 -14.43445 -14.14494 -13.75260 -13.69043 -13.48672 -13.45773 -13.19749 -13.10187 -12.82415 -12.63089 -12.52885 -12.35617 -12.30438 -12.14538 -12.04430 -11.69880 -11.47825 -11.24642 -11.11288 -10.80835 -10.73753 -10.39588 -9.36607 -8.05380 -6.22266 0.81659 1.24277 1.43470 1.44974 1.53011 1.70024 1.86714 2.16068 2.45820 3.18456 3.56261 3.64039 3.91791 4.03621 4.17468 4.28532 4.29221 4.32329 4.36396 4.59225 4.61772 4.63067 4.82673 4.89346 4.92964 5.04341 5.05748 5.10905 5.18772 5.19897 5.22302 5.30401 5.39384 5.62459 5.64420 5.64747 5.72261 6.06764 6.17886 6.25690 6.36672 6.78075 6.85643 7.45484 8.94884 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.003093 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.688496 B = 9050.778183 C = 9288.828603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.010 3.990 3 H 0.108 0.892 4 C -0.104 4.104 5 C 0.455 3.545 6 O -0.537 6.537 7 O -0.355 6.355 8 C 0.097 3.903 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.536 4.536 13 H 0.049 0.951 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.019 4.019 21 C -0.216 4.216 22 C -0.227 4.227 23 C -0.042 4.042 24 O -0.188 6.188 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -2.704 21.573 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 H 0.126 0.874 4 C -0.141 4.141 5 C 0.300 3.700 6 O -0.428 6.428 7 O -0.271 6.271 8 C 0.024 3.976 9 C 0.060 3.940 10 C -0.175 4.175 11 C -0.176 4.176 12 C -0.574 4.574 13 H 0.068 0.932 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.068 4.068 21 C -0.235 4.235 22 C -0.246 4.246 23 C -0.109 4.109 24 O -0.085 6.085 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.175 0.825 40 H 0.185 0.815 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.445 -2.706 21.227 21.403 hybrid contribution -0.150 0.887 -0.911 1.281 sum 0.296 -1.819 20.315 20.399 Atomic orbital electron populations 1.21949 0.93283 1.02592 1.03117 1.19469 0.97038 0.98054 0.86299 0.87377 1.21533 1.05257 1.00265 0.87047 1.24211 0.75810 0.84166 0.85808 1.90595 1.38696 1.25901 1.87607 1.86511 1.71885 1.53229 1.15523 1.23209 0.98127 0.93194 0.83084 1.18264 0.93595 0.93597 0.88560 1.21598 0.96989 0.98957 0.99918 1.21644 0.97606 0.97783 1.00611 1.21206 1.33822 1.10674 0.91721 0.93226 1.25509 0.94842 0.96081 1.00707 1.69961 1.40009 1.21691 1.22078 0.85680 0.78582 0.79031 0.78977 1.20191 1.20768 1.19817 1.22233 1.02452 0.83051 0.99108 1.21932 1.03332 1.02236 0.96035 1.22164 1.06112 0.93382 1.02954 1.24803 0.97904 1.02176 0.86015 1.84006 1.60008 1.28007 1.36433 0.91790 0.91343 0.92072 0.85807 0.86152 0.93257 0.93121 0.94684 0.92204 0.96059 0.96160 0.91897 0.94932 0.92848 0.82518 0.81475 0.74814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.92 71.98 0.64 -2.78 16 2 C 0.01 0.21 2.44 -11.54 -0.03 0.18 16 3 H 0.11 2.35 7.91 -2.39 -0.02 2.33 16 4 C -0.10 -2.41 5.27 29.85 0.16 -2.26 16 5 C 0.46 14.89 7.68 71.24 0.55 15.44 16 6 O -0.54 -19.83 13.72 21.95 0.30 -19.53 16 7 O -0.36 -13.66 8.77 -51.35 -0.45 -14.11 16 8 C 0.10 4.28 4.26 71.98 0.31 4.59 16 9 C 0.06 2.95 0.58 -52.93 -0.03 2.92 16 10 C -0.12 -5.60 8.06 71.98 0.58 -5.02 16 11 C -0.12 -5.72 8.14 71.98 0.59 -5.13 16 12 C -0.54 -28.86 8.01 25.60 0.20 -28.66 16 13 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 14 C 0.03 1.54 5.13 84.66 0.43 1.98 16 15 N -0.90 -49.15 9.46 21.45 0.20 -48.95 16 16 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.02 -0.38 5.83 24.83 0.14 -0.24 16 21 C -0.22 -4.04 10.78 22.19 0.24 -3.80 16 22 C -0.23 -3.54 10.91 22.19 0.24 -3.29 16 23 C -0.04 -0.62 12.09 66.97 0.81 0.19 16 24 O -0.19 -3.82 10.65 -2.52 -0.03 -3.85 16 25 H 0.06 1.73 5.96 -2.39 -0.01 1.71 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 31 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 32 H 0.03 1.50 7.50 -2.39 -0.02 1.49 16 33 H 0.06 3.11 6.25 -2.39 -0.01 3.09 16 34 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 3.30 6.11 -2.38 -0.01 3.29 16 37 H 0.03 1.41 7.68 -2.38 -0.02 1.39 16 38 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.24 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -61.60 338.31 7.89 -53.71 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.00 Total: 13.92 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.83 Total: -25.89 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.20 Total: -48.95 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.18 Total: -37.48 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -61.60 7.89 -53.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860658508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.761 kcal (2) G-P(sol) polarization free energy of solvation -61.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds