Wall clock time and date at job start Tue Mar 31 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00095 * 2 1 4 4 H 1.48495 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46987 * 300.00343 * 3 2 1 6 6 H 1.48504 * 109.46880 * 59.99899 * 3 2 1 7 7 C 1.37880 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47595 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47595 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47298 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00071 * 359.97438 * 13 12 11 15 15 O 1.34232 * 119.99784 * 180.02562 * 13 12 11 16 16 C 1.45202 * 116.99450 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46867 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.34509 * 125.79251 * 90.00216 * 19 18 17 21 21 C 1.41382 * 106.84493 * 180.02562 * 20 19 18 22 22 C 1.34525 * 106.83881 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.41856 * 359.73761 * 22 21 20 24 24 H 0.97003 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47034 * 59.99935 * 9 7 2 26 26 H 1.08995 * 109.46952 * 299.99791 * 9 7 2 27 27 H 1.09003 * 109.46863 * 59.99612 * 10 9 7 28 28 H 1.09003 * 109.47104 * 300.00251 * 10 9 7 29 29 H 1.09003 * 109.46776 * 60.00262 * 11 10 9 30 30 H 1.09003 * 109.47210 * 300.00321 * 11 10 9 31 31 H 1.09003 * 109.46845 * 60.00304 * 12 11 10 32 32 H 1.09003 * 109.47104 * 300.00386 * 12 11 10 33 33 H 1.09001 * 109.46860 * 60.00352 * 16 15 13 34 34 H 1.08993 * 109.47426 * 299.99714 * 16 15 13 35 35 H 1.09001 * 109.46801 * 300.00397 * 17 16 15 36 36 H 1.09001 * 109.46998 * 59.99993 * 17 16 15 37 37 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 38 38 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 39 39 H 1.08003 * 126.57870 * 359.96205 * 20 19 18 40 40 H 1.07996 * 126.58216 * 179.97438 * 21 20 19 41 41 H 1.07999 * 125.79058 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7211 -7.4551 0.0005 14 8 0.5129 -7.4551 0.0015 15 8 2.3924 -8.6175 0.0005 16 6 1.6015 -9.8353 0.0011 17 6 2.5335 -11.0487 0.0004 18 6 1.7003 -12.3318 0.0003 19 6 2.6183 -13.5269 0.0003 20 6 3.0975 -14.1509 1.0913 21 6 3.9126 -15.2109 0.6321 22 6 3.8831 -15.1710 -0.7122 23 8 3.0933 -14.1524 -1.0893 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.1019 -6.0922 0.8901 32 1 3.1007 -6.0923 -0.8899 33 1 0.9724 -9.8603 -0.8887 34 1 0.9731 -9.8600 0.8913 35 1 3.1617 -11.0237 -0.8901 36 1 3.1630 -11.0238 0.8899 37 1 1.0718 -12.3569 0.8905 38 1 1.0711 -12.3564 -0.8894 39 1 2.8987 -13.8912 2.1206 40 1 4.4554 -15.9167 1.2433 41 1 4.4031 -15.8462 -1.3757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861018722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:08 Heat of formation + Delta-G solvation = -109.645797 kcal Electronic energy + Delta-G solvation = -19998.175055 eV Core-core repulsion = 16650.771974 eV Total energy + Delta-G solvation = -3347.403081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.93310 -40.44307 -37.04107 -35.08458 -34.94046 -33.25360 -32.67652 -30.43532 -29.68464 -26.68288 -25.53583 -22.93446 -22.15565 -22.09892 -20.84662 -20.43430 -20.01593 -17.87151 -17.35843 -16.93286 -16.45452 -16.17861 -16.09306 -15.52732 -14.90570 -14.47727 -14.40273 -13.61087 -13.23866 -13.20634 -13.13874 -12.96086 -12.64542 -12.55237 -12.20336 -11.84017 -11.64908 -11.60561 -11.44873 -11.01811 -10.68570 -10.57361 -10.54046 -10.46273 -10.36569 -10.29116 -9.64878 -9.28837 -9.00796 -8.84779 -8.31840 -5.96452 -3.98941 1.32588 2.21712 2.29530 2.50496 2.75222 3.32971 3.40285 3.44341 4.16327 4.42803 4.48293 4.58046 4.62367 4.69475 4.76376 4.91035 4.96437 5.12573 5.17854 5.28190 5.30618 5.39213 5.43274 5.47473 5.63975 5.65672 5.72421 5.79972 6.06197 6.11601 6.20167 6.40529 6.48464 6.75232 6.77104 6.95242 7.16574 7.72633 7.82231 7.87227 8.04476 8.46314 9.08868 9.64971 11.14869 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.065625 B = 0.001810 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.566777 B =15464.950130 C =15671.783675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.460 3.540 14 O -0.506 6.506 15 O -0.362 6.362 16 C 0.065 3.935 17 C -0.116 4.116 18 C -0.038 4.038 19 C -0.009 4.009 20 C -0.209 4.209 21 C -0.214 4.214 22 C -0.043 4.043 23 O -0.176 6.176 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.200 -30.760 0.380 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.393 6.393 15 O -0.279 6.279 16 C -0.009 4.009 17 C -0.154 4.154 18 C -0.075 4.075 19 C -0.059 4.059 20 C -0.228 4.228 21 C -0.233 4.233 22 C -0.111 4.111 23 O -0.072 6.072 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.603 -30.590 0.086 31.295 hybrid contribution 0.427 0.622 0.219 0.786 sum 7.031 -29.968 0.305 30.783 Atomic orbital electron populations 1.69984 1.06053 1.26419 1.50990 1.25044 0.94845 0.99266 0.95426 0.86548 0.80093 0.83874 0.77544 1.19760 1.21050 1.21054 1.21318 0.93069 0.91139 1.50346 0.92623 1.19107 0.94056 0.91263 0.97383 1.21650 0.99145 0.93553 1.00423 1.21577 0.97096 0.92713 1.03230 1.21612 0.99933 0.87870 1.05519 1.24217 0.87596 0.85884 0.71957 1.90672 1.15719 1.87868 1.44995 1.86511 1.41991 1.14993 1.84452 1.22954 0.93527 0.81511 1.02901 1.21551 0.98400 0.90807 1.04644 1.19996 0.94999 0.87616 1.04872 1.22304 1.01527 0.97769 0.84261 1.21637 1.02915 0.98697 0.99572 1.21863 1.04556 1.02023 0.94864 1.24056 0.98163 0.92674 0.96200 1.84028 1.50916 1.37157 1.35105 0.93095 0.96531 0.96519 0.93198 0.93191 0.91553 0.91543 0.87860 0.87869 0.91040 0.91009 0.90252 0.90123 0.88313 0.89485 0.83389 0.83440 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.11 -2.22 5.15 -26.74 -0.14 -2.36 16 11 C -0.11 -1.88 4.50 -26.74 -0.12 -2.00 16 12 C -0.11 -1.49 5.81 -27.89 -0.16 -1.65 16 13 C 0.46 6.54 7.96 36.01 0.29 6.83 16 14 O -0.51 -8.70 15.73 -18.75 -0.29 -9.00 16 15 O -0.36 -4.41 10.22 -39.26 -0.40 -4.81 16 16 C 0.07 0.62 5.47 37.16 0.20 0.82 16 17 C -0.12 -0.86 5.58 -26.73 -0.15 -1.01 16 18 C -0.04 -0.24 5.75 -27.89 -0.16 -0.40 16 19 C -0.01 -0.07 6.57 -35.63 -0.23 -0.30 16 20 C -0.21 -1.61 10.81 -39.70 -0.43 -2.04 16 21 C -0.21 -1.51 10.91 -39.70 -0.43 -1.94 16 22 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 23 O -0.18 -1.57 10.65 5.69 0.06 -1.51 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.20 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -33.89 355.00 -7.82 -41.72 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.72 Total: -4.59 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.53 Total: -17.34 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.64 Total: -15.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.89 -7.82 -41.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861018722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.929 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds