Wall clock time and date at job start Tue Mar 31 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00095 * 2 1 4 4 H 1.48495 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46987 * 300.00343 * 3 2 1 6 6 H 1.48504 * 109.46880 * 59.99899 * 3 2 1 7 7 C 1.37880 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47595 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47595 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47298 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00071 * 359.97438 * 13 12 11 15 15 O 1.34232 * 119.99784 * 180.02562 * 13 12 11 16 16 C 1.45202 * 116.99450 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46867 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.34509 * 125.79251 * 90.00216 * 19 18 17 21 21 C 1.41382 * 106.84493 * 180.02562 * 20 19 18 22 22 C 1.34525 * 106.83881 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.41856 * 359.73761 * 22 21 20 24 24 H 0.97003 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47034 * 59.99935 * 9 7 2 26 26 H 1.08995 * 109.46952 * 299.99791 * 9 7 2 27 27 H 1.09003 * 109.46863 * 59.99612 * 10 9 7 28 28 H 1.09003 * 109.47104 * 300.00251 * 10 9 7 29 29 H 1.09003 * 109.46776 * 60.00262 * 11 10 9 30 30 H 1.09003 * 109.47210 * 300.00321 * 11 10 9 31 31 H 1.09003 * 109.46845 * 60.00304 * 12 11 10 32 32 H 1.09003 * 109.47104 * 300.00386 * 12 11 10 33 33 H 1.09001 * 109.46860 * 60.00352 * 16 15 13 34 34 H 1.08993 * 109.47426 * 299.99714 * 16 15 13 35 35 H 1.09001 * 109.46801 * 300.00397 * 17 16 15 36 36 H 1.09001 * 109.46998 * 59.99993 * 17 16 15 37 37 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 38 38 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 39 39 H 1.08003 * 126.57870 * 359.96205 * 20 19 18 40 40 H 1.07996 * 126.58216 * 179.97438 * 21 20 19 41 41 H 1.07999 * 125.79058 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7211 -7.4551 0.0005 14 8 0.5129 -7.4551 0.0015 15 8 2.3924 -8.6175 0.0005 16 6 1.6015 -9.8353 0.0011 17 6 2.5335 -11.0487 0.0004 18 6 1.7003 -12.3318 0.0003 19 6 2.6183 -13.5269 0.0003 20 6 3.0975 -14.1509 1.0913 21 6 3.9126 -15.2109 0.6321 22 6 3.8831 -15.1710 -0.7122 23 8 3.0933 -14.1524 -1.0893 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.1019 -6.0922 0.8901 32 1 3.1007 -6.0923 -0.8899 33 1 0.9724 -9.8603 -0.8887 34 1 0.9731 -9.8600 0.8913 35 1 3.1617 -11.0237 -0.8901 36 1 3.1630 -11.0238 0.8899 37 1 1.0718 -12.3569 0.8905 38 1 1.0711 -12.3564 -0.8894 39 1 2.8987 -13.8912 2.1206 40 1 4.4554 -15.9167 1.2433 41 1 4.4031 -15.8462 -1.3757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861018722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:08 Heat of formation + Delta-G solvation = -127.718351 kcal Electronic energy + Delta-G solvation = -19998.958740 eV Core-core repulsion = 16650.771974 eV Total energy + Delta-G solvation = -3348.186766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.46932 -41.52704 -38.06884 -36.63178 -35.71247 -34.64803 -33.79457 -31.77355 -30.69213 -27.93659 -26.74766 -24.49828 -22.92200 -22.65901 -22.04926 -21.49727 -21.16388 -18.72300 -18.38485 -18.13199 -17.89900 -17.26072 -16.88875 -16.48949 -16.46152 -15.73932 -15.40218 -14.58356 -14.53373 -14.21477 -13.81176 -13.73560 -13.67560 -13.60472 -13.45531 -13.28541 -13.09167 -12.84874 -12.40616 -12.31858 -12.18637 -12.17075 -12.10411 -11.60409 -11.50020 -11.36671 -11.27895 -11.03248 -10.84111 -10.54507 -9.37645 -8.18131 -6.29750 0.78435 1.19204 1.41607 1.42063 1.55569 1.59848 1.76523 2.15996 2.42768 3.14988 3.56020 3.77652 3.84173 3.97403 4.09472 4.10517 4.16367 4.21140 4.22162 4.39492 4.42617 4.58595 4.65223 4.65650 4.80171 4.87355 4.89375 4.96737 5.07406 5.10592 5.15913 5.24836 5.31616 5.33892 5.46880 5.58102 5.62919 5.78999 5.89318 6.22363 6.26499 6.74902 6.88982 7.39892 8.94126 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.065625 B = 0.001810 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.566777 B =15464.950130 C =15671.783675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.097 4.097 11 C -0.100 4.100 12 C -0.104 4.104 13 C 0.465 3.535 14 O -0.543 6.543 15 O -0.359 6.359 16 C 0.060 3.940 17 C -0.104 4.104 18 C -0.034 4.034 19 C -0.027 4.027 20 C -0.220 4.220 21 C -0.229 4.229 22 C -0.048 4.048 23 O -0.196 6.196 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 -31.498 0.527 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.141 4.141 13 C 0.310 3.690 14 O -0.433 6.433 15 O -0.276 6.276 16 C -0.014 4.014 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.077 4.077 20 C -0.239 4.239 21 C -0.248 4.248 22 C -0.114 4.114 23 O -0.093 6.093 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.819 -31.355 0.236 32.573 hybrid contribution -0.271 0.760 0.178 0.826 sum 8.547 -30.596 0.413 31.770 Atomic orbital electron populations 1.70130 1.07990 1.27640 1.51966 1.26066 0.95776 1.03647 0.94838 0.85349 0.79196 0.78538 0.77641 1.18180 1.20530 1.20524 1.21797 0.93791 0.92263 1.50091 0.91587 1.19072 0.94718 0.93652 0.94563 1.21443 0.97897 0.92420 1.01648 1.21353 0.97453 0.93234 1.01788 1.21498 0.98860 0.85699 1.08012 1.24291 0.87007 0.86705 0.70954 1.90668 1.17310 1.88411 1.46935 1.86490 1.42042 1.15187 1.83832 1.23195 0.93991 0.81022 1.03165 1.21454 0.97986 0.90255 1.04480 1.20010 0.94718 0.86456 1.05874 1.22593 1.02258 0.98497 0.84305 1.21952 1.02894 0.98907 1.00162 1.22202 1.04847 1.02379 0.95387 1.24755 0.97451 0.92289 0.96937 1.84019 1.51541 1.37928 1.35804 0.92888 0.99469 0.99425 0.91832 0.91872 0.93152 0.93074 0.85257 0.85358 0.91081 0.90574 0.90800 0.89864 0.86786 0.89089 0.82259 0.81731 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.29 21.45 0.28 -58.14 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.83 5.15 30.59 0.16 -3.67 16 11 C -0.10 -3.44 4.50 30.59 0.14 -3.31 16 12 C -0.10 -2.53 5.81 29.85 0.17 -2.36 16 13 C 0.47 12.66 7.96 71.24 0.57 13.23 16 14 O -0.54 -18.67 15.73 21.97 0.35 -18.33 16 15 O -0.36 -8.15 10.22 -51.44 -0.53 -8.67 16 16 C 0.06 1.07 5.47 71.98 0.39 1.46 16 17 C -0.10 -1.40 5.58 30.60 0.17 -1.23 16 18 C -0.03 -0.38 5.75 29.85 0.17 -0.21 16 19 C -0.03 -0.41 6.57 24.83 0.16 -0.25 16 20 C -0.22 -3.15 10.81 22.19 0.24 -2.91 16 21 C -0.23 -2.92 10.91 22.19 0.24 -2.68 16 22 C -0.05 -0.58 12.09 66.97 0.81 0.23 16 23 O -0.20 -3.34 10.65 -2.55 -0.03 -3.37 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -74.14 355.00 7.16 -66.99 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.99 Total: 6.30 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.07 Total: -31.41 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.28 Total: -58.14 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.21 Total: -30.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -74.14 7.16 -66.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861018722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.733 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds