Wall clock time and date at job start Tue Mar 31 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47038 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47221 * 120.00078 * 3 2 1 7 7 C 1.39077 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 191.50954 * 7 2 1 9 9 N 1.36821 * 120.00055 * 11.50383 * 7 2 1 10 10 C 1.34772 * 120.00036 * 196.34095 * 9 7 2 11 11 O 1.21657 * 120.00016 * 4.50771 * 10 9 7 12 12 C 1.46950 * 119.99929 * 184.49870 * 10 9 7 13 13 C 1.33123 * 120.00183 * 174.41556 * 12 10 9 14 14 C 1.50695 * 120.00202 * 180.02562 * 13 12 10 15 15 N 1.46901 * 109.47304 * 125.00273 * 14 13 12 16 16 C 1.47015 * 110.99613 * 46.31793 * 15 14 13 17 17 C 1.53103 * 109.25569 * 182.35049 * 16 15 14 18 18 O 1.43011 * 109.29252 * 303.22199 * 17 16 15 19 19 C 1.43017 * 113.74263 * 58.64832 * 18 17 16 20 20 C 1.47016 * 111.00315 * 169.99988 * 15 14 13 21 21 C 1.46505 * 119.99686 * 16.34083 * 9 7 2 22 22 C 1.52998 * 117.49622 * 128.77615 * 21 9 7 23 23 C 1.53002 * 60.00142 * 252.50988 * 22 21 9 24 24 H 0.97000 * 119.99675 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00055 * 354.42154 * 12 10 9 26 26 H 1.08004 * 119.99763 * 0.02562 * 13 12 10 27 27 H 1.09005 * 109.47266 * 5.00191 * 14 13 12 28 28 H 1.08996 * 109.47696 * 245.00170 * 14 13 12 29 29 H 1.08997 * 109.47456 * 62.44090 * 16 15 14 30 30 H 1.09001 * 109.54729 * 302.31085 * 16 15 14 31 31 H 1.08996 * 109.50723 * 183.26005 * 17 16 15 32 32 H 1.09008 * 109.49978 * 63.17697 * 17 16 15 33 33 H 1.08997 * 109.50683 * 61.26093 * 19 18 17 34 34 H 1.08994 * 109.50982 * 181.34768 * 19 18 17 35 35 H 1.09006 * 109.50232 * 57.66962 * 20 15 14 36 36 H 1.08998 * 109.50735 * 297.54144 * 20 15 14 37 37 H 1.08989 * 115.55216 * 274.48436 * 21 9 7 38 38 H 1.09000 * 117.50015 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.49722 * 145.01925 * 22 21 9 40 40 H 1.08994 * 117.49911 * 252.50928 * 23 22 21 41 41 H 1.09001 * 117.51564 * 107.48270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0089 -1.2044 -0.0005 8 1 3.0725 -1.2140 0.1861 9 7 1.3454 -2.3773 -0.2374 10 6 1.9221 -3.5536 0.0792 11 8 2.9963 -3.5702 0.6500 12 6 1.2533 -4.8160 -0.2649 13 6 1.8714 -5.9759 -0.0536 14 6 1.1857 -7.2705 -0.4070 15 7 2.0439 -8.0484 -1.3105 16 6 3.4305 -8.0800 -0.8227 17 6 4.2996 -8.8490 -1.8214 18 8 3.7596 -10.1603 -2.0060 19 6 2.4109 -10.1659 -2.4816 20 6 1.5224 -9.4113 -1.4891 21 6 0.0080 -2.3546 -0.8351 22 6 -0.2343 -3.2412 -2.0582 23 6 -0.1356 -1.7231 -2.2213 24 1 -0.4850 0.8401 0.0004 25 1 0.2602 -4.8028 -0.6894 26 1 2.8643 -5.9892 0.3712 27 1 0.2378 -7.0566 -0.9009 28 1 1.0008 -7.8436 0.5015 29 1 3.4634 -8.5772 0.1467 30 1 3.8052 -7.0613 -0.7229 31 1 5.3163 -8.9249 -1.4360 32 1 4.3104 -8.3221 -2.7756 33 1 2.3661 -9.6771 -3.4548 34 1 2.0619 -11.1943 -2.5745 35 1 0.5042 -9.3636 -1.8753 36 1 1.5249 -9.9305 -0.5307 37 1 -0.8175 -2.2254 -0.1353 38 1 0.6015 -3.8411 -2.4185 39 1 -1.2194 -3.6956 -2.1632 40 1 -1.0557 -1.1788 -2.4336 41 1 0.7649 -1.3243 -2.6884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864999325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:26 Heat of formation + Delta-G solvation = -8.887849 kcal Electronic energy + Delta-G solvation = -22154.776989 eV Core-core repulsion = 18844.035852 eV Total energy + Delta-G solvation = -3310.741137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66407 -38.82991 -36.42546 -35.91540 -33.35538 -32.37737 -31.24484 -31.09670 -28.24774 -25.67902 -24.20899 -24.07285 -22.02066 -21.45133 -20.72748 -19.88948 -18.16778 -17.01606 -16.74941 -16.18281 -15.97085 -15.20644 -15.14185 -15.02833 -14.84193 -14.30238 -14.06649 -13.94998 -13.32632 -12.92832 -12.90638 -12.37729 -12.13243 -11.94888 -11.62992 -11.49374 -11.27267 -11.12603 -10.81322 -10.75133 -10.56041 -10.42041 -10.37372 -9.87807 -9.76558 -9.36757 -9.00344 -8.82208 -8.40316 -8.26798 -7.80353 -6.34349 -3.83960 2.09656 3.19721 3.22198 3.26222 3.69146 3.85098 4.08642 4.40618 4.66236 4.71648 4.80387 4.90344 4.96209 5.03369 5.16553 5.20089 5.33874 5.38970 5.44473 5.50412 5.58756 5.65678 5.78698 5.84684 5.85879 5.88448 5.95072 6.09502 6.27203 6.32180 6.73726 6.85538 6.88511 6.93701 6.99995 7.02306 7.07099 7.24039 7.51979 8.07341 8.47750 9.16864 9.40165 9.99648 10.67506 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.003708 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.262615 B = 7548.485995 C = 7986.734953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.036 3.964 3 Si 0.925 3.075 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.102 0.898 9 N -0.408 5.408 10 C 0.465 3.535 11 O -0.598 6.598 12 C -0.154 4.154 13 C -0.135 4.135 14 C 0.089 3.911 15 N -0.532 5.532 16 C 0.011 3.989 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.064 3.936 20 C 0.016 3.984 21 C 0.138 3.862 22 C -0.226 4.226 23 C -0.146 4.146 24 H 0.269 0.731 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -14.253 -5.293 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.124 5.124 10 C 0.256 3.744 11 O -0.485 6.485 12 C -0.176 4.176 13 C -0.157 4.157 14 C -0.037 4.037 15 N -0.257 5.257 16 C -0.117 4.117 17 C -0.014 4.014 18 O -0.308 6.308 19 C -0.013 4.013 20 C -0.112 4.112 21 C 0.032 3.968 22 C -0.264 4.264 23 C -0.184 4.184 24 H 0.079 0.921 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.105 -13.984 -5.435 15.044 hybrid contribution -0.066 0.903 0.697 1.143 sum -1.171 -13.081 -4.738 13.962 Atomic orbital electron populations 1.69892 1.05900 1.27568 1.47075 1.25277 0.95482 0.99581 0.96506 0.86006 0.79036 0.80590 0.79177 1.19890 1.20870 1.19775 1.19667 0.94087 0.82561 1.47010 0.88009 1.43115 1.13659 1.05166 1.50481 1.18039 0.87430 0.83746 0.85172 1.90600 1.23787 1.87107 1.47050 1.23159 1.00701 0.93396 1.00374 1.23217 1.00351 0.92454 0.99629 1.21184 0.95991 0.92366 0.94205 1.62341 1.02223 1.12677 1.48481 1.22912 0.89378 1.02427 0.96995 1.22707 0.96812 0.83033 0.98809 1.87956 1.27903 1.27973 1.86968 1.22637 0.81835 1.00410 0.96400 1.22805 0.99704 0.89294 0.99433 1.21160 0.87132 1.00110 0.88381 1.23670 1.01866 0.94974 1.05909 1.22763 1.02048 0.92511 1.01097 0.92082 0.85790 0.86154 0.89935 0.93863 0.93960 0.88279 0.88443 0.92155 0.92255 0.88672 0.89625 0.94047 0.86853 0.89222 0.89301 0.89631 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.18 10.08 55.50 0.56 -21.62 16 2 C 0.04 0.94 5.01 -17.45 -0.09 0.85 16 3 Si 0.93 20.50 29.57 -169.99 -5.03 15.47 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.31 -8.47 9.26 -15.01 -0.14 -8.61 16 8 H 0.10 2.97 7.34 -52.49 -0.39 2.59 16 9 N -0.41 -10.49 2.93 -109.11 -0.32 -10.81 16 10 C 0.46 11.68 7.49 -12.73 -0.10 11.58 16 11 O -0.60 -17.01 15.89 5.23 0.08 -16.93 16 12 C -0.15 -3.01 7.76 -37.84 -0.29 -3.31 16 13 C -0.14 -2.31 8.15 -36.09 -0.29 -2.61 16 14 C 0.09 1.19 5.73 -4.98 -0.03 1.16 16 15 N -0.53 -6.81 4.87 -235.75 -1.15 -7.95 16 16 C 0.01 0.14 5.10 -3.71 -0.02 0.12 16 17 C 0.06 0.72 7.01 37.21 0.26 0.98 16 18 O -0.39 -4.71 10.83 -35.23 -0.38 -5.09 16 19 C 0.06 0.63 7.01 37.21 0.26 0.89 16 20 C 0.02 0.17 5.63 -3.71 -0.02 0.14 16 21 C 0.14 3.05 3.62 -67.93 -0.25 2.80 16 22 C -0.23 -4.05 7.78 -26.73 -0.21 -4.26 16 23 C -0.15 -2.97 8.89 -26.73 -0.24 -3.21 16 24 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 25 H 0.12 2.16 5.07 -52.48 -0.27 1.90 16 26 H 0.12 2.23 6.00 -52.48 -0.31 1.92 16 27 H 0.08 1.02 7.82 -51.93 -0.41 0.62 16 28 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.38 6.02 -51.93 -0.31 1.07 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 2.63 7.68 -51.94 -0.40 2.23 16 38 H 0.09 1.64 7.04 -51.93 -0.37 1.27 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -30.65 328.69 -8.66 -39.30 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.23 Total: 6.14 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.15 Total: -3.46 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.91 Total: -40.38 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.30 Total: -22.02 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.65 -8.66 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.416 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds