Wall clock time and date at job start Tue Mar 31 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47038 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47221 * 120.00078 * 3 2 1 7 7 C 1.39077 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 191.50954 * 7 2 1 9 9 N 1.36821 * 120.00055 * 11.50383 * 7 2 1 10 10 C 1.34772 * 120.00036 * 196.34095 * 9 7 2 11 11 O 1.21657 * 120.00016 * 4.50771 * 10 9 7 12 12 C 1.46950 * 119.99929 * 184.49870 * 10 9 7 13 13 C 1.33123 * 120.00183 * 174.41556 * 12 10 9 14 14 C 1.50695 * 120.00202 * 180.02562 * 13 12 10 15 15 N 1.46901 * 109.47304 * 125.00273 * 14 13 12 16 16 C 1.47015 * 110.99613 * 46.31793 * 15 14 13 17 17 C 1.53103 * 109.25569 * 182.35049 * 16 15 14 18 18 O 1.43011 * 109.29252 * 303.22199 * 17 16 15 19 19 C 1.43017 * 113.74263 * 58.64832 * 18 17 16 20 20 C 1.47016 * 111.00315 * 169.99988 * 15 14 13 21 21 C 1.46505 * 119.99686 * 16.34083 * 9 7 2 22 22 C 1.52998 * 117.49622 * 128.77615 * 21 9 7 23 23 C 1.53002 * 60.00142 * 252.50988 * 22 21 9 24 24 H 0.97000 * 119.99675 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00055 * 354.42154 * 12 10 9 26 26 H 1.08004 * 119.99763 * 0.02562 * 13 12 10 27 27 H 1.09005 * 109.47266 * 5.00191 * 14 13 12 28 28 H 1.08996 * 109.47696 * 245.00170 * 14 13 12 29 29 H 1.08997 * 109.47456 * 62.44090 * 16 15 14 30 30 H 1.09001 * 109.54729 * 302.31085 * 16 15 14 31 31 H 1.08996 * 109.50723 * 183.26005 * 17 16 15 32 32 H 1.09008 * 109.49978 * 63.17697 * 17 16 15 33 33 H 1.08997 * 109.50683 * 61.26093 * 19 18 17 34 34 H 1.08994 * 109.50982 * 181.34768 * 19 18 17 35 35 H 1.09006 * 109.50232 * 57.66962 * 20 15 14 36 36 H 1.08998 * 109.50735 * 297.54144 * 20 15 14 37 37 H 1.08989 * 115.55216 * 274.48436 * 21 9 7 38 38 H 1.09000 * 117.50015 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.49722 * 145.01925 * 22 21 9 40 40 H 1.08994 * 117.49911 * 252.50928 * 23 22 21 41 41 H 1.09001 * 117.51564 * 107.48270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0089 -1.2044 -0.0005 8 1 3.0725 -1.2140 0.1861 9 7 1.3454 -2.3773 -0.2374 10 6 1.9221 -3.5536 0.0792 11 8 2.9963 -3.5702 0.6500 12 6 1.2533 -4.8160 -0.2649 13 6 1.8714 -5.9759 -0.0536 14 6 1.1857 -7.2705 -0.4070 15 7 2.0439 -8.0484 -1.3105 16 6 3.4305 -8.0800 -0.8227 17 6 4.2996 -8.8490 -1.8214 18 8 3.7596 -10.1603 -2.0060 19 6 2.4109 -10.1659 -2.4816 20 6 1.5224 -9.4113 -1.4891 21 6 0.0080 -2.3546 -0.8351 22 6 -0.2343 -3.2412 -2.0582 23 6 -0.1356 -1.7231 -2.2213 24 1 -0.4850 0.8401 0.0004 25 1 0.2602 -4.8028 -0.6894 26 1 2.8643 -5.9892 0.3712 27 1 0.2378 -7.0566 -0.9009 28 1 1.0008 -7.8436 0.5015 29 1 3.4634 -8.5772 0.1467 30 1 3.8052 -7.0613 -0.7229 31 1 5.3163 -8.9249 -1.4360 32 1 4.3104 -8.3221 -2.7756 33 1 2.3661 -9.6771 -3.4548 34 1 2.0619 -11.1943 -2.5745 35 1 0.5042 -9.3636 -1.8753 36 1 1.5249 -9.9305 -0.5307 37 1 -0.8175 -2.2254 -0.1353 38 1 0.6015 -3.8411 -2.4185 39 1 -1.2194 -3.6956 -2.1632 40 1 -1.0557 -1.1788 -2.4336 41 1 0.7649 -1.3243 -2.6884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864999325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:25 Heat of formation + Delta-G solvation = -29.990160 kcal Electronic energy + Delta-G solvation = -22155.692054 eV Core-core repulsion = 18844.035852 eV Total energy + Delta-G solvation = -3311.656202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79610 -40.43797 -37.97122 -37.24233 -35.12903 -33.82695 -33.05746 -32.11363 -29.42190 -27.37247 -25.52401 -25.04863 -23.53813 -23.13835 -21.92995 -21.21696 -19.72069 -18.90650 -18.04791 -17.40190 -17.05157 -16.97097 -16.30493 -16.09538 -15.99144 -15.77708 -15.67201 -15.23442 -14.79732 -14.68467 -14.30585 -13.72104 -13.46284 -13.15416 -12.99471 -12.96078 -12.72850 -12.43940 -12.33596 -12.23369 -12.14839 -11.91953 -11.67837 -11.52426 -11.04788 -10.70706 -10.64951 -10.38030 -10.30312 -9.76855 -9.32752 -8.30762 -5.91391 0.56085 1.39162 1.41433 1.48595 2.25092 2.46700 2.82336 2.95037 3.03425 3.13723 3.23753 3.71273 3.94497 4.01508 4.11139 4.18360 4.21146 4.25203 4.32998 4.40044 4.45136 4.51173 4.63223 4.66813 4.73826 4.74756 4.83356 4.85822 4.91652 5.01894 5.13551 5.40421 5.41643 5.47637 5.53383 5.59977 5.87360 5.97902 6.08358 6.18050 6.52361 7.16790 7.47273 8.05514 8.67903 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.003708 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.262615 B = 7548.485995 C = 7986.734953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.012 3.988 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.351 4.351 8 H 0.069 0.931 9 N -0.420 5.420 10 C 0.449 3.551 11 O -0.650 6.650 12 C -0.176 4.176 13 C -0.099 4.099 14 C 0.094 3.906 15 N -0.542 5.542 16 C 0.011 3.989 17 C 0.066 3.934 18 O -0.404 6.404 19 C 0.060 3.940 20 C 0.017 3.983 21 C 0.108 3.892 22 C -0.180 4.180 23 C -0.150 4.150 24 H 0.275 0.725 25 H 0.151 0.849 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -15.830 -6.601 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.479 4.479 8 H 0.087 0.913 9 N -0.135 5.135 10 C 0.242 3.758 11 O -0.541 6.541 12 C -0.197 4.197 13 C -0.121 4.121 14 C -0.032 4.032 15 N -0.268 5.268 16 C -0.117 4.117 17 C -0.011 4.011 18 O -0.323 6.323 19 C -0.017 4.017 20 C -0.111 4.111 21 C 0.003 3.997 22 C -0.217 4.217 23 C -0.188 4.188 24 H 0.085 0.915 25 H 0.169 0.831 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.060 -15.570 -6.765 17.250 hybrid contribution 0.552 1.286 1.138 1.804 sum -2.509 -14.284 -5.627 15.556 Atomic orbital electron populations 1.69967 1.06375 1.28506 1.45886 1.25902 0.96403 1.01616 0.95354 0.85173 0.78166 0.77333 0.78739 1.19636 1.18946 1.20447 1.19555 0.93323 0.84659 1.50362 0.91325 1.43287 1.14789 1.04725 1.50696 1.19028 0.87082 0.85489 0.84184 1.90543 1.26133 1.88136 1.49307 1.22914 1.01964 0.91153 1.03660 1.23478 0.99021 0.93834 0.95731 1.21203 0.96268 0.90294 0.95471 1.62371 1.01994 1.14404 1.48011 1.22860 0.89990 1.01374 0.97504 1.22699 0.97210 0.82825 0.98334 1.87943 1.29215 1.27997 1.87105 1.22852 0.80737 1.01950 0.96140 1.22912 1.00797 0.87612 0.99782 1.21152 0.85047 1.04354 0.89102 1.23707 1.03942 0.93342 1.00736 1.22715 1.01610 0.94894 0.99541 0.91516 0.83124 0.88259 0.87750 0.92198 0.94099 0.90388 0.87236 0.92356 0.92147 0.86147 0.87447 0.93904 0.88151 0.89265 0.84958 0.88267 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.70 10.08 21.69 0.22 -44.48 16 2 C 0.01 0.62 5.01 84.97 0.43 1.05 16 3 Si 0.98 42.64 29.57 68.60 2.03 44.67 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.35 -20.46 9.26 84.12 0.78 -19.68 16 8 H 0.07 4.33 7.34 -2.91 -0.02 4.30 16 9 N -0.42 -22.37 2.93 -617.36 -1.81 -24.18 16 10 C 0.45 23.46 7.49 86.53 0.65 24.11 16 11 O -0.65 -39.26 15.89 -4.21 -0.07 -39.33 16 12 C -0.18 -6.77 7.76 23.40 0.18 -6.59 16 13 C -0.10 -3.32 8.15 24.53 0.20 -3.12 16 14 C 0.09 2.23 5.73 85.56 0.49 2.72 16 15 N -0.54 -12.51 4.87 -899.77 -4.38 -16.89 16 16 C 0.01 0.27 5.10 86.32 0.44 0.71 16 17 C 0.07 1.43 7.01 72.02 0.50 1.93 16 18 O -0.40 -8.94 10.83 -148.98 -1.61 -10.55 16 19 C 0.06 0.99 7.01 72.01 0.50 1.50 16 20 C 0.02 0.29 5.63 86.31 0.49 0.77 16 21 C 0.11 4.77 3.62 44.99 0.16 4.93 16 22 C -0.18 -5.96 7.78 30.59 0.24 -5.73 16 23 C -0.15 -5.95 8.89 30.60 0.27 -5.67 16 24 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.15 4.89 5.07 -2.91 -0.01 4.88 16 26 H 0.10 3.78 6.00 -2.91 -0.02 3.76 16 27 H 0.10 2.11 7.82 -2.38 -0.02 2.09 16 28 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 2.22 6.02 -2.39 -0.01 2.20 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 4.65 7.68 -2.39 -0.02 4.63 16 38 H 0.09 3.03 7.04 -2.39 -0.02 3.02 16 39 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -70.19 328.69 0.72 -69.47 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 1.02 Total: 24.36 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.33 Total: -3.07 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -5.97 Total: -85.55 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -1.68 Total: -49.88 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.19 0.72 -69.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.480 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds