Wall clock time and date at job start Tue Mar 31 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47020 * 327.88004 * 3 2 1 5 5 N 1.46506 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00114 * 270.00126 * 5 4 3 7 7 C 1.50693 * 109.47439 * 269.99739 * 6 5 4 8 8 H 1.08003 * 120.00127 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00403 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99641 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00339 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47264 * 59.99355 * 11 9 7 13 13 H 1.48495 * 109.47095 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46378 * 299.99674 * 11 9 7 15 15 C 1.34778 * 119.99473 * 90.00023 * 5 4 3 16 16 O 1.21511 * 119.99862 * 179.97438 * 15 5 4 17 17 O 1.34637 * 120.00295 * 0.02562 * 15 5 4 18 18 C 1.45200 * 116.99977 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46978 * 89.99768 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47046 * 209.99558 * 18 17 15 24 24 H 1.09003 * 109.46972 * 207.88428 * 3 2 1 25 25 H 1.08999 * 109.47131 * 87.88356 * 3 2 1 26 26 H 1.09004 * 109.47299 * 60.00746 * 4 3 2 27 27 H 1.08999 * 109.47455 * 300.00153 * 4 3 2 28 28 H 1.09006 * 109.47252 * 30.00324 * 6 5 4 29 29 H 1.09004 * 109.46770 * 149.99941 * 6 5 4 30 30 H 0.97004 * 119.99765 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47097 * 329.99834 * 18 17 15 32 32 H 1.08996 * 109.47853 * 300.00072 * 19 18 17 33 33 H 1.09002 * 109.47153 * 60.00100 * 19 18 17 34 34 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 36 36 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 37 37 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 40 40 H 1.08992 * 109.47399 * 300.00084 * 23 18 17 41 41 H 1.09004 * 109.46724 * 60.00570 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.2208 0.7670 5 7 4.5836 -1.2205 0.7664 6 6 5.3158 -1.8950 -0.3082 7 6 5.5676 -3.3295 0.0788 8 1 5.2168 -3.7017 1.0300 9 6 6.2457 -4.1668 -0.7814 10 7 6.6725 -3.7137 -1.9400 11 14 6.5571 -5.9452 -0.3019 12 1 5.2596 -6.6327 -0.0805 13 1 7.2995 -6.6288 -1.3912 14 1 7.3594 -5.9877 0.9471 15 6 5.2576 -0.5996 1.7547 16 8 6.4727 -0.5996 1.7546 17 8 4.5846 0.0199 2.7426 18 6 5.3756 0.6673 3.7739 19 6 5.6528 2.1166 3.3695 20 6 6.4858 2.7989 4.4564 21 6 5.7158 2.7767 5.7784 22 6 5.4385 1.3274 6.1828 23 6 4.6060 0.6451 5.0961 24 1 2.9709 0.9092 0.4806 25 1 2.9714 -0.0371 -1.0270 26 1 2.7557 -2.1294 0.2863 27 1 2.7552 -1.1830 1.7939 28 1 4.7264 -1.8639 -1.2247 29 1 6.2681 -1.3902 -0.4714 30 1 7.1499 -4.3027 -2.5450 31 1 6.3200 0.1366 3.8942 32 1 6.2010 2.1325 2.4276 33 1 4.7084 2.6473 3.2492 34 1 6.6830 3.8316 4.1686 35 1 7.4303 2.2683 4.5771 36 1 4.7713 3.3073 5.6577 37 1 6.3094 3.2624 6.5528 38 1 4.8904 1.3116 7.1248 39 1 6.3830 0.7969 6.3035 40 1 3.6616 1.1758 4.9758 41 1 4.4085 -0.3875 5.3842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866800463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:44 Heat of formation + Delta-G solvation = -79.572655 kcal Electronic energy + Delta-G solvation = -22248.645656 eV Core-core repulsion = 18934.839395 eV Total energy + Delta-G solvation = -3313.806260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12980 -38.25556 -36.86821 -35.82909 -35.01954 -32.83147 -30.90362 -30.86422 -29.98222 -27.29476 -24.06555 -23.56904 -22.71626 -22.09660 -19.93312 -19.63971 -17.72936 -17.11560 -16.67834 -16.43290 -15.49017 -15.38793 -14.75505 -14.66910 -14.30160 -14.19407 -13.83949 -13.48598 -13.27468 -12.94394 -12.60029 -12.46741 -12.32683 -12.30931 -12.16585 -11.72771 -11.31400 -11.27376 -11.17727 -10.98905 -10.84661 -10.78286 -10.76240 -10.58945 -10.39752 -10.21072 -9.90309 -9.73957 -9.59051 -8.48800 -7.94090 -6.10946 -4.15718 2.70855 2.88564 2.90678 3.30275 3.34684 3.37850 3.57539 4.02312 4.39064 4.56236 4.62363 4.64023 4.86288 5.10520 5.11674 5.20583 5.24024 5.27213 5.32962 5.36518 5.38236 5.52441 5.60103 5.67357 5.86073 5.90137 5.94486 5.97179 6.02113 6.09949 6.18405 6.23396 6.27199 6.69052 7.02869 7.34511 7.37386 7.65849 7.85027 8.12887 8.22045 8.83607 9.08764 9.50099 10.97121 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.005216 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.998697 B = 5366.703838 C = 6806.985669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.048 4.048 4 C 0.124 3.876 5 N -0.577 5.577 6 C 0.258 3.742 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.894 5.894 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.640 3.360 16 O -0.564 6.564 17 O -0.375 6.375 18 C 0.109 3.891 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.116 4.116 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 11.816 11.503 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.141 3.859 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.394 3.606 16 O -0.452 6.452 17 O -0.290 6.290 18 C 0.052 3.948 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.126 0.874 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.667 11.781 11.366 17.022 hybrid contribution 0.747 -1.039 0.106 1.284 sum -3.919 10.743 11.472 16.198 Atomic orbital electron populations 1.81186 1.13067 1.09018 1.09418 1.29095 0.95089 0.92846 0.92667 1.19860 0.81325 1.02588 1.05203 1.21255 0.81352 0.96709 1.00867 1.47249 1.05230 1.54114 1.24937 1.19426 0.92491 0.91612 0.82382 1.21398 1.36970 0.95042 1.03698 0.92296 1.24899 0.95183 0.98931 0.94822 1.69909 1.38109 1.36321 1.08882 0.86550 0.78432 0.84230 0.78185 1.20184 1.21156 1.20173 1.18174 0.84361 0.77956 0.80138 1.90960 1.12257 1.64675 1.77258 1.86255 1.41168 1.66637 1.34962 1.22509 0.95061 0.92297 0.84891 1.21939 1.00799 0.95005 0.99542 1.21486 0.98868 1.00597 0.94407 1.21595 1.00507 0.96651 0.97226 1.21492 1.00342 0.95818 0.97695 1.21594 0.99248 1.01789 0.92699 0.87418 0.86755 0.88867 0.90060 0.93993 0.93320 0.92537 0.89657 0.90995 0.91322 0.91582 0.91562 0.91833 0.91896 0.91337 0.91578 0.91005 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.02 18.54 42.15 0.78 -6.24 16 2 C 0.22 2.92 15.43 -20.76 -0.32 2.60 16 3 C -0.05 -0.57 6.03 -29.52 -0.18 -0.75 16 4 C 0.12 1.84 5.37 -4.04 -0.02 1.82 16 5 N -0.58 -11.22 2.46 -180.86 -0.44 -11.66 16 6 C 0.26 6.16 5.16 -5.20 -0.03 6.13 16 7 C -0.53 -14.25 9.39 -34.44 -0.32 -14.57 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.64 12.83 8.37 54.06 0.45 13.28 16 16 O -0.56 -13.41 15.18 -19.28 -0.29 -13.70 16 17 O -0.37 -6.10 8.71 -40.32 -0.35 -6.45 16 18 C 0.11 1.50 2.46 -26.73 -0.07 1.43 16 19 C -0.14 -1.61 5.56 -26.73 -0.15 -1.76 16 20 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -1.02 5.92 -26.76 -0.16 -1.18 16 23 C -0.12 -1.25 5.58 -26.75 -0.15 -1.40 16 24 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 27 H 0.08 1.12 7.38 -51.93 -0.38 0.74 16 28 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 29 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 1.36 7.16 -51.93 -0.37 0.99 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -31.38 347.52 -7.30 -38.68 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.60 Total: -2.28 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.35 Total: 4.82 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.07 Total: -42.46 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.64 Total: -20.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.38 -7.30 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866800463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.888 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds