Wall clock time and date at job start Tue Mar 31 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47020 * 327.88004 * 3 2 1 5 5 N 1.46506 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00114 * 270.00126 * 5 4 3 7 7 C 1.50693 * 109.47439 * 269.99739 * 6 5 4 8 8 H 1.08003 * 120.00127 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00403 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99641 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00339 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47264 * 59.99355 * 11 9 7 13 13 H 1.48495 * 109.47095 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46378 * 299.99674 * 11 9 7 15 15 C 1.34778 * 119.99473 * 90.00023 * 5 4 3 16 16 O 1.21511 * 119.99862 * 179.97438 * 15 5 4 17 17 O 1.34637 * 120.00295 * 0.02562 * 15 5 4 18 18 C 1.45200 * 116.99977 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46978 * 89.99768 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47046 * 209.99558 * 18 17 15 24 24 H 1.09003 * 109.46972 * 207.88428 * 3 2 1 25 25 H 1.08999 * 109.47131 * 87.88356 * 3 2 1 26 26 H 1.09004 * 109.47299 * 60.00746 * 4 3 2 27 27 H 1.08999 * 109.47455 * 300.00153 * 4 3 2 28 28 H 1.09006 * 109.47252 * 30.00324 * 6 5 4 29 29 H 1.09004 * 109.46770 * 149.99941 * 6 5 4 30 30 H 0.97004 * 119.99765 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47097 * 329.99834 * 18 17 15 32 32 H 1.08996 * 109.47853 * 300.00072 * 19 18 17 33 33 H 1.09002 * 109.47153 * 60.00100 * 19 18 17 34 34 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 36 36 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 37 37 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 40 40 H 1.08992 * 109.47399 * 300.00084 * 23 18 17 41 41 H 1.09004 * 109.46724 * 60.00570 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.2208 0.7670 5 7 4.5836 -1.2205 0.7664 6 6 5.3158 -1.8950 -0.3082 7 6 5.5676 -3.3295 0.0788 8 1 5.2168 -3.7017 1.0300 9 6 6.2457 -4.1668 -0.7814 10 7 6.6725 -3.7137 -1.9400 11 14 6.5571 -5.9452 -0.3019 12 1 5.2596 -6.6327 -0.0805 13 1 7.2995 -6.6288 -1.3912 14 1 7.3594 -5.9877 0.9471 15 6 5.2576 -0.5996 1.7547 16 8 6.4727 -0.5996 1.7546 17 8 4.5846 0.0199 2.7426 18 6 5.3756 0.6673 3.7739 19 6 5.6528 2.1166 3.3695 20 6 6.4858 2.7989 4.4564 21 6 5.7158 2.7767 5.7784 22 6 5.4385 1.3274 6.1828 23 6 4.6060 0.6451 5.0961 24 1 2.9709 0.9092 0.4806 25 1 2.9714 -0.0371 -1.0270 26 1 2.7557 -2.1294 0.2863 27 1 2.7552 -1.1830 1.7939 28 1 4.7264 -1.8639 -1.2247 29 1 6.2681 -1.3902 -0.4714 30 1 7.1499 -4.3027 -2.5450 31 1 6.3200 0.1366 3.8942 32 1 6.2010 2.1325 2.4276 33 1 4.7084 2.6473 3.2492 34 1 6.6830 3.8316 4.1686 35 1 7.4303 2.2683 4.5771 36 1 4.7713 3.3073 5.6577 37 1 6.3094 3.2624 6.5528 38 1 4.8904 1.3116 7.1248 39 1 6.3830 0.7969 6.3035 40 1 3.6616 1.1758 4.9758 41 1 4.4085 -0.3875 5.3842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866800463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:43 Heat of formation + Delta-G solvation = -96.614900 kcal Electronic energy + Delta-G solvation = -22249.384663 eV Core-core repulsion = 18934.839395 eV Total energy + Delta-G solvation = -3314.545268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56666 -39.37442 -38.06067 -37.13123 -36.55505 -34.80358 -32.24152 -31.72529 -31.00646 -29.11880 -25.36946 -25.33649 -23.58377 -23.22390 -21.19440 -20.74136 -19.08520 -18.62501 -18.26494 -17.99624 -16.89378 -16.73648 -16.29769 -15.83952 -15.31621 -15.17460 -15.13255 -14.68399 -14.51736 -14.24991 -13.91947 -13.68058 -13.60393 -13.56061 -13.19452 -13.14838 -12.99388 -12.74423 -12.52343 -12.26502 -12.17784 -12.05690 -11.95233 -11.84313 -11.71707 -11.54772 -11.33367 -11.26367 -10.81052 -10.58163 -9.62950 -8.18759 -6.30938 1.29235 1.42344 1.44510 1.52140 1.71983 1.82684 2.01505 2.42548 2.84663 3.13486 3.35246 3.73872 3.76042 4.01860 4.07575 4.12745 4.26231 4.26590 4.31808 4.52392 4.55506 4.55894 4.69225 4.78908 4.86713 4.94281 5.02826 5.10493 5.11441 5.21492 5.22222 5.27305 5.33365 5.36850 5.47432 5.55489 5.65390 5.81841 6.09259 6.57092 6.62605 6.76521 7.34020 7.53336 8.88084 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.005216 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.998697 B = 5366.703838 C = 6806.985669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.248 3.752 3 C -0.034 4.034 4 C 0.121 3.879 5 N -0.577 5.577 6 C 0.274 3.726 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.958 3.042 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.642 3.358 16 O -0.609 6.609 17 O -0.362 6.362 18 C 0.098 3.902 19 C -0.131 4.131 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.011 0.989 30 H 0.267 0.733 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 12.493 12.973 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.070 4.070 3 C -0.075 4.075 4 C -0.003 4.003 5 N -0.315 5.315 6 C 0.154 3.846 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.184 4.184 10 N -0.562 5.562 11 Si 0.783 3.217 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.206 1.206 15 C 0.396 3.604 16 O -0.501 6.501 17 O -0.276 6.276 18 C 0.043 3.957 19 C -0.168 4.168 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.147 4.147 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.897 12.475 12.858 18.861 hybrid contribution 1.134 -1.207 -0.307 1.684 sum -4.762 11.268 12.551 17.527 Atomic orbital electron populations 1.81225 1.14219 1.10296 1.10801 1.29076 0.94870 0.91610 0.91396 1.19749 0.80292 1.01848 1.05596 1.21440 0.78399 0.98127 1.02331 1.47050 1.06942 1.53559 1.23949 1.18948 0.91500 0.90266 0.83857 1.21698 1.36960 0.96507 1.03367 0.92986 1.25675 0.94980 1.02879 0.94825 1.70005 1.38766 1.37691 1.09756 0.85607 0.78694 0.79723 0.77636 1.18828 1.20495 1.20590 1.18245 0.83812 0.77745 0.80560 1.90928 1.14448 1.66321 1.78370 1.86261 1.40772 1.66181 1.34400 1.22893 0.94362 0.92806 0.85643 1.21919 1.01652 0.94052 0.99225 1.21505 0.98162 1.00894 0.94652 1.21591 1.01078 0.96362 0.96491 1.21526 0.99929 0.95946 0.97753 1.21626 0.99741 1.02138 0.91199 0.85482 0.85665 0.89107 0.88643 0.93344 0.97108 0.92385 0.92514 0.93606 0.89677 0.90075 0.92746 0.90637 0.90185 0.89129 0.92337 0.89580 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.51 18.54 20.01 0.37 -14.14 16 2 C 0.25 6.06 15.43 89.44 1.38 7.44 16 3 C -0.03 -0.73 6.03 28.79 0.17 -0.55 16 4 C 0.12 3.44 5.37 86.38 0.46 3.91 16 5 N -0.58 -22.52 2.46 -956.54 -2.35 -24.87 16 6 C 0.27 13.33 5.16 85.63 0.44 13.78 16 7 C -0.55 -29.66 9.39 25.60 0.24 -29.42 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.02 0.89 5.46 84.65 0.46 1.35 16 10 N -0.92 -52.83 13.29 21.45 0.28 -52.54 16 11 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 C 0.64 26.15 8.37 129.79 1.09 27.24 16 16 O -0.61 -30.26 15.18 19.81 0.30 -29.96 16 17 O -0.36 -11.60 8.71 -55.46 -0.48 -12.09 16 18 C 0.10 2.70 2.46 30.59 0.08 2.77 16 19 C -0.13 -3.03 5.56 30.59 0.17 -2.86 16 20 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 21 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 22 C -0.11 -1.73 5.92 30.58 0.18 -1.55 16 23 C -0.11 -2.17 5.58 30.58 0.17 -2.00 16 24 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 27 H 0.10 2.46 7.38 -2.39 -0.02 2.44 16 28 H 0.05 2.28 8.07 -2.38 -0.02 2.26 16 29 H 0.01 0.61 7.42 -2.39 -0.02 0.59 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.06 1.89 7.16 -2.39 -0.02 1.87 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.10 347.52 6.36 -62.74 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.00 Total: 8.59 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 5.21 Total: 16.83 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -1.69 Total: -91.56 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.18 Total: -42.05 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -69.10 6.36 -62.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866800463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.873 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds