Wall clock time and date at job start Tue Mar 31 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48501 * 109.46933 * 239.99713 * 3 2 1 5 5 H 1.48501 * 109.47026 * 120.00113 * 3 2 1 6 6 H 1.48494 * 109.47658 * 359.97438 * 3 2 1 7 7 C 1.37871 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00178 * 186.16805 * 7 2 1 9 9 C 1.50701 * 120.00237 * 6.15929 * 7 2 1 10 10 C 1.53003 * 115.54998 * 275.22524 * 9 7 2 11 11 O 1.45204 * 109.47229 * 304.72995 * 10 9 7 12 12 C 1.34223 * 116.99927 * 179.86295 * 11 10 9 13 13 O 1.20826 * 120.00571 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.54055 * 111.89588 * 298.99052 * 14 12 11 16 16 C 1.54896 * 104.08723 * 262.44553 * 15 14 12 17 17 C 1.54801 * 102.73583 * 321.32978 * 16 15 14 18 18 C 1.54308 * 104.51807 * 37.61118 * 17 16 15 19 19 H 1.08998 * 110.58807 * 98.83201 * 18 17 16 20 20 O 1.43831 * 109.38056 * 222.46478 * 18 17 16 21 21 C 1.44300 * 107.22137 * 140.68527 * 20 18 17 22 22 C 1.54615 * 111.93476 * 61.80531 * 14 12 11 23 23 C 1.53004 * 117.49923 * 129.55269 * 9 7 2 24 24 C 1.52999 * 117.49771 * 60.89482 * 9 7 2 25 25 H 0.96992 * 120.00117 * 185.57535 * 1 2 3 26 26 H 1.09001 * 109.47106 * 64.72936 * 10 9 7 27 27 H 1.09003 * 109.47251 * 184.73462 * 10 9 7 28 28 H 1.09000 * 110.50580 * 21.09452 * 15 14 12 29 29 H 1.08994 * 110.50888 * 143.79187 * 15 14 12 30 30 H 1.08996 * 110.75851 * 79.63501 * 16 15 14 31 31 H 1.08994 * 110.75612 * 202.83333 * 16 15 14 32 32 H 1.09003 * 110.42876 * 156.37571 * 17 16 15 33 33 H 1.09003 * 110.42606 * 278.72777 * 17 16 15 34 34 H 1.09005 * 110.61779 * 78.56451 * 21 20 18 35 35 H 1.08993 * 110.62075 * 201.56757 * 21 20 18 36 36 H 1.08998 * 110.90782 * 217.84708 * 22 14 12 37 37 H 1.09000 * 110.91559 * 341.45851 * 22 14 12 38 38 H 1.08996 * 117.49482 * 0.02562 * 23 9 7 39 39 H 1.08999 * 117.49559 * 145.02223 * 23 9 7 40 40 H 1.09005 * 117.49580 * 214.98547 * 24 9 7 41 41 H 1.09005 * 117.49819 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1969 0.1000 9 6 1.2575 -2.4953 -0.1411 10 6 0.6941 -3.0764 1.1573 11 8 1.7651 -3.2228 2.1268 12 6 1.4350 -3.7208 3.3288 13 8 0.2893 -4.0247 3.5630 14 6 2.4938 -3.9018 4.3859 15 6 3.5954 -4.8794 3.9342 16 6 3.1868 -6.2296 4.5739 17 6 2.6531 -5.8017 5.9626 18 6 1.9100 -4.4752 5.6994 19 1 0.8368 -4.6470 5.6161 20 8 2.2228 -3.5375 6.7442 21 6 2.3707 -2.2423 6.1256 22 6 3.1439 -2.5580 4.7884 23 6 1.7509 -3.4821 -1.2013 24 6 0.4475 -2.7101 -1.4212 25 1 -0.4850 -0.8360 0.0816 26 1 -0.0672 -2.4055 1.5554 27 1 0.2502 -4.0515 0.9564 28 1 3.6113 -4.9611 2.8474 29 1 4.5676 -4.5584 4.3082 30 1 2.4025 -6.7118 3.9905 31 1 4.0507 -6.8865 4.6746 32 1 1.9656 -6.5518 6.3536 33 1 3.4793 -5.6460 6.6562 34 1 1.3952 -1.8039 5.9147 35 1 2.9616 -1.5800 6.7582 36 1 4.2119 -2.6810 4.9681 37 1 2.9637 -1.7960 4.0301 38 1 2.6159 -3.1902 -1.7966 39 1 1.6737 -4.5453 -0.9738 40 1 -0.4867 -3.2657 -1.3384 41 1 0.4545 -1.9100 -2.1615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869716239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:06 Heat of formation + Delta-G solvation = -118.891858 kcal Electronic energy + Delta-G solvation = -23149.318858 eV Core-core repulsion = 19801.514837 eV Total energy + Delta-G solvation = -3347.804020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01473 -39.03631 -37.03162 -35.54460 -35.43309 -32.10442 -31.95747 -28.03933 -27.65958 -26.71381 -24.87615 -22.86274 -22.13266 -21.37820 -20.86785 -19.60285 -19.19185 -17.32983 -16.97811 -16.38728 -16.28568 -15.51599 -15.23161 -14.78446 -14.38958 -14.02683 -13.77578 -13.60886 -13.29267 -12.77404 -12.54744 -12.41480 -12.13914 -11.88080 -11.56905 -11.42215 -11.15891 -11.10224 -10.95269 -10.91342 -10.82120 -10.60645 -10.56436 -10.15925 -10.08386 -10.02619 -9.67101 -9.54933 -8.61754 -8.55928 -8.41557 -6.40454 -4.15406 2.55036 3.06363 3.39503 3.40487 3.59776 3.68498 4.28781 4.42644 4.46492 4.68437 4.86980 4.90830 5.04644 5.08271 5.19262 5.24505 5.29023 5.40223 5.47448 5.54440 5.69749 5.72991 5.76208 5.80471 5.92869 5.97573 5.97963 6.01401 6.04381 6.05827 6.19236 6.22774 6.37838 6.49638 6.74157 6.85106 6.95147 7.12728 7.20613 8.12977 8.26294 8.36729 8.79146 9.57966 10.96715 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.005689 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.222495 B = 4920.358145 C = 5649.548083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 1.065 2.935 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.111 3.889 11 O -0.322 6.322 12 C 0.472 3.528 13 O -0.520 6.520 14 C -0.091 4.091 15 C -0.106 4.106 16 C -0.127 4.127 17 C -0.122 4.122 18 C 0.087 3.913 19 H 0.097 0.903 20 O -0.371 6.371 21 C 0.044 3.956 22 C -0.140 4.140 23 C -0.191 4.191 24 C -0.167 4.167 25 H 0.271 0.729 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -8.766 9.219 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.893 3.107 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.013 3.987 10 C 0.037 3.963 11 O -0.237 6.237 12 C 0.315 3.685 13 O -0.410 6.410 14 C -0.093 4.093 15 C -0.144 4.144 16 C -0.164 4.164 17 C -0.160 4.160 18 C 0.029 3.971 19 H 0.115 0.885 20 O -0.290 6.290 21 C -0.033 4.033 22 C -0.177 4.177 23 C -0.228 4.228 24 C -0.204 4.204 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.323 -7.232 9.381 13.427 hybrid contribution -0.130 -1.622 -0.274 1.650 sum 6.193 -8.855 9.107 14.131 Atomic orbital electron populations 1.70759 1.06836 1.31127 1.45087 1.25816 0.96501 1.02360 0.93298 0.83604 0.74993 0.75444 0.76658 1.21343 1.21362 1.20763 1.21187 0.94174 0.89275 1.55336 0.92590 1.19050 0.99400 0.95858 0.84356 1.22911 0.87179 0.98124 0.88075 1.86537 1.42013 1.73299 1.21839 1.22963 0.88438 0.73740 0.83350 1.90595 1.21711 1.47930 1.80720 1.22216 0.94639 0.99040 0.93358 1.22448 0.96639 0.93328 1.01979 1.22568 1.01126 0.97051 0.95667 1.22523 1.00412 0.95227 0.97791 1.23447 1.00259 0.89583 0.83819 0.88526 1.88818 1.91655 1.17715 1.30788 1.24097 0.99709 0.86073 0.93377 1.23747 1.00440 0.95310 0.98232 1.22924 0.98001 0.95497 1.06353 1.22783 0.93212 1.02300 1.02153 0.91758 0.91618 0.94032 0.89971 0.89684 0.91205 0.90516 0.90791 0.90084 0.91803 0.88465 0.88911 0.88286 0.89710 0.91361 0.91324 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.46 55.43 0.75 -25.44 16 2 C 0.03 0.70 5.39 -17.82 -0.10 0.61 16 3 Si 1.07 24.35 29.91 -169.99 -5.08 19.27 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.56 -15.17 8.58 -34.44 -0.30 -15.47 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.01 0.34 1.21 -155.66 -0.19 0.15 16 10 C 0.11 2.56 5.26 37.16 0.20 2.76 16 11 O -0.32 -7.01 9.71 -39.24 -0.38 -7.39 16 12 C 0.47 9.14 6.59 36.01 0.24 9.38 16 13 O -0.52 -11.13 15.22 -18.75 -0.29 -11.41 16 14 C -0.09 -1.37 0.80 -153.33 -0.12 -1.49 16 15 C -0.11 -1.33 5.96 -25.18 -0.15 -1.48 16 16 C -0.13 -1.37 6.90 -24.78 -0.17 -1.54 16 17 C -0.12 -1.38 6.55 -25.10 -0.16 -1.54 16 18 C 0.09 1.24 3.87 -25.12 -0.10 1.15 16 19 H 0.10 1.56 6.74 -51.93 -0.35 1.21 16 20 O -0.37 -5.39 11.09 -35.23 -0.39 -5.79 16 21 C 0.04 0.58 7.80 39.71 0.31 0.89 16 22 C -0.14 -1.93 6.48 -23.33 -0.15 -2.08 16 23 C -0.19 -4.05 9.93 -26.69 -0.27 -4.32 16 24 C -0.17 -3.75 8.92 -26.69 -0.24 -3.99 16 25 H 0.27 7.83 6.13 -40.82 -0.25 7.58 16 26 H 0.07 1.65 7.48 -51.93 -0.39 1.27 16 27 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 29 H 0.08 0.90 7.24 -51.93 -0.38 0.53 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.85 8.03 -51.93 -0.42 0.44 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.06 7.24 -51.93 -0.38 0.69 16 37 H 0.10 1.55 7.82 -51.93 -0.41 1.15 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -30.42 332.57 -7.98 -38.40 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.40 Total: 4.33 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.20 Total: -16.98 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.75 Total: -25.44 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.06 Total: -24.58 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.42 -7.98 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869716239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.493 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds