Wall clock time and date at job start Tue Mar 31 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48501 * 109.46933 * 239.99713 * 3 2 1 5 5 H 1.48501 * 109.47026 * 120.00113 * 3 2 1 6 6 H 1.48494 * 109.47658 * 359.97438 * 3 2 1 7 7 C 1.37871 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00178 * 186.16805 * 7 2 1 9 9 C 1.50701 * 120.00237 * 6.15929 * 7 2 1 10 10 C 1.53003 * 115.54998 * 275.22524 * 9 7 2 11 11 O 1.45204 * 109.47229 * 304.72995 * 10 9 7 12 12 C 1.34223 * 116.99927 * 179.86295 * 11 10 9 13 13 O 1.20826 * 120.00571 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.54055 * 111.89588 * 298.99052 * 14 12 11 16 16 C 1.54896 * 104.08723 * 262.44553 * 15 14 12 17 17 C 1.54801 * 102.73583 * 321.32978 * 16 15 14 18 18 C 1.54308 * 104.51807 * 37.61118 * 17 16 15 19 19 H 1.08998 * 110.58807 * 98.83201 * 18 17 16 20 20 O 1.43831 * 109.38056 * 222.46478 * 18 17 16 21 21 C 1.44300 * 107.22137 * 140.68527 * 20 18 17 22 22 C 1.54615 * 111.93476 * 61.80531 * 14 12 11 23 23 C 1.53004 * 117.49923 * 129.55269 * 9 7 2 24 24 C 1.52999 * 117.49771 * 60.89482 * 9 7 2 25 25 H 0.96992 * 120.00117 * 185.57535 * 1 2 3 26 26 H 1.09001 * 109.47106 * 64.72936 * 10 9 7 27 27 H 1.09003 * 109.47251 * 184.73462 * 10 9 7 28 28 H 1.09000 * 110.50580 * 21.09452 * 15 14 12 29 29 H 1.08994 * 110.50888 * 143.79187 * 15 14 12 30 30 H 1.08996 * 110.75851 * 79.63501 * 16 15 14 31 31 H 1.08994 * 110.75612 * 202.83333 * 16 15 14 32 32 H 1.09003 * 110.42876 * 156.37571 * 17 16 15 33 33 H 1.09003 * 110.42606 * 278.72777 * 17 16 15 34 34 H 1.09005 * 110.61779 * 78.56451 * 21 20 18 35 35 H 1.08993 * 110.62075 * 201.56757 * 21 20 18 36 36 H 1.08998 * 110.90782 * 217.84708 * 22 14 12 37 37 H 1.09000 * 110.91559 * 341.45851 * 22 14 12 38 38 H 1.08996 * 117.49482 * 0.02562 * 23 9 7 39 39 H 1.08999 * 117.49559 * 145.02223 * 23 9 7 40 40 H 1.09005 * 117.49580 * 214.98547 * 24 9 7 41 41 H 1.09005 * 117.49819 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1969 0.1000 9 6 1.2575 -2.4953 -0.1411 10 6 0.6941 -3.0764 1.1573 11 8 1.7651 -3.2228 2.1268 12 6 1.4350 -3.7208 3.3288 13 8 0.2893 -4.0247 3.5630 14 6 2.4938 -3.9018 4.3859 15 6 3.5954 -4.8794 3.9342 16 6 3.1868 -6.2296 4.5739 17 6 2.6531 -5.8017 5.9626 18 6 1.9100 -4.4752 5.6994 19 1 0.8368 -4.6470 5.6161 20 8 2.2228 -3.5375 6.7442 21 6 2.3707 -2.2423 6.1256 22 6 3.1439 -2.5580 4.7884 23 6 1.7509 -3.4821 -1.2013 24 6 0.4475 -2.7101 -1.4212 25 1 -0.4850 -0.8360 0.0816 26 1 -0.0672 -2.4055 1.5554 27 1 0.2502 -4.0515 0.9564 28 1 3.6113 -4.9611 2.8474 29 1 4.5676 -4.5584 4.3082 30 1 2.4025 -6.7118 3.9905 31 1 4.0507 -6.8865 4.6746 32 1 1.9656 -6.5518 6.3536 33 1 3.4793 -5.6460 6.6562 34 1 1.3952 -1.8039 5.9147 35 1 2.9616 -1.5800 6.7582 36 1 4.2119 -2.6810 4.9681 37 1 2.9637 -1.7960 4.0301 38 1 2.6159 -3.1902 -1.7966 39 1 1.6737 -4.5453 -0.9738 40 1 -0.4867 -3.2657 -1.3384 41 1 0.4545 -1.9100 -2.1615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869716239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:05 Heat of formation + Delta-G solvation = -135.464872 kcal Electronic energy + Delta-G solvation = -23150.037517 eV Core-core repulsion = 19801.514837 eV Total energy + Delta-G solvation = -3348.522680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35020 -40.48091 -38.81726 -37.17773 -36.56312 -34.02955 -33.19469 -29.32751 -28.84646 -28.12364 -26.95605 -24.19715 -23.37256 -23.08830 -21.82635 -21.54275 -20.52357 -18.95296 -18.56159 -18.05474 -17.61206 -16.92779 -16.44421 -16.21887 -15.67795 -15.58555 -15.29805 -14.98981 -14.67274 -14.60732 -14.07776 -13.94313 -13.47791 -13.21638 -12.92649 -12.72571 -12.65199 -12.51252 -12.31184 -12.14358 -12.07304 -11.96868 -11.90400 -11.81607 -11.72822 -11.54894 -11.31482 -10.71961 -10.57706 -10.53650 -10.36075 -8.57115 -6.32186 1.00485 1.53100 1.54415 1.60180 1.79538 2.56756 2.59680 3.12509 3.17589 3.20324 3.40036 3.50054 3.73829 3.83147 3.91566 4.08704 4.11083 4.12753 4.19779 4.23695 4.33713 4.39348 4.46209 4.55899 4.64526 4.70876 4.75816 4.79624 4.87746 4.88009 4.93309 4.97284 5.07054 5.11086 5.15330 5.29654 5.37640 5.49138 5.76016 6.10243 6.19715 6.59055 6.66882 7.48331 8.80612 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.005689 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.222495 B = 4920.358145 C = 5649.548083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.021 4.021 3 Si 1.106 2.894 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.288 1.288 7 C -0.569 4.569 8 H 0.048 0.952 9 C -0.021 4.021 10 C 0.122 3.878 11 O -0.333 6.333 12 C 0.467 3.533 13 O -0.547 6.547 14 C -0.094 4.094 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.114 4.114 18 C 0.082 3.918 19 H 0.069 0.931 20 O -0.374 6.374 21 C 0.042 3.958 22 C -0.137 4.137 23 C -0.164 4.164 24 C -0.166 4.166 25 H 0.260 0.740 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -9.824 10.069 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.220 4.220 3 Si 0.929 3.071 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.213 1.213 7 C -0.606 4.606 8 H 0.066 0.934 9 C -0.022 4.022 10 C 0.048 3.952 11 O -0.248 6.248 12 C 0.312 3.688 13 O -0.439 6.439 14 C -0.095 4.095 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.151 4.151 18 C 0.024 3.976 19 H 0.087 0.913 20 O -0.293 6.293 21 C -0.035 4.035 22 C -0.174 4.174 23 C -0.201 4.201 24 C -0.203 4.203 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.819 -8.315 10.231 15.861 hybrid contribution -0.939 -1.324 -0.516 1.703 sum 7.879 -9.639 9.715 15.792 Atomic orbital electron populations 1.70868 1.07784 1.30525 1.47524 1.27095 0.96542 1.05767 0.92617 0.83076 0.74289 0.71790 0.77984 1.19492 1.19609 1.21329 1.21439 0.93964 0.90736 1.54476 0.93412 1.19137 1.01221 0.96340 0.85454 1.22582 0.86846 0.97783 0.87988 1.86542 1.41542 1.73913 1.22758 1.23949 0.89304 0.72376 0.83161 1.90574 1.23276 1.49029 1.80972 1.22419 0.94218 1.00782 0.92071 1.22537 0.96707 0.93524 1.01409 1.22578 1.01966 0.96484 0.94755 1.22523 1.00757 0.93341 0.98504 1.23481 0.99327 0.91262 0.83509 0.91270 1.88815 1.91527 1.18049 1.30942 1.24200 0.99221 0.86145 0.93900 1.23803 1.02274 0.93777 0.97584 1.22958 0.97153 0.96301 1.03640 1.22719 0.94721 1.02300 1.00575 0.92959 0.94952 0.92734 0.91268 0.86933 0.92368 0.87344 0.89783 0.88407 0.93892 0.85288 0.85629 0.90735 0.89344 0.88653 0.89693 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.46 21.45 0.29 -55.13 16 2 C -0.02 -1.15 5.39 84.65 0.46 -0.70 16 3 Si 1.11 49.07 29.91 68.60 2.05 51.12 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.57 -31.02 8.58 25.60 0.22 -30.80 16 8 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 9 C -0.02 -1.03 1.21 -52.93 -0.06 -1.09 16 10 C 0.12 5.79 5.26 71.98 0.38 6.17 16 11 O -0.33 -14.74 9.71 -51.34 -0.50 -15.24 16 12 C 0.47 18.47 6.59 71.24 0.47 18.93 16 13 O -0.55 -24.35 15.22 21.97 0.33 -24.02 16 14 C -0.09 -2.74 0.80 -51.42 -0.04 -2.78 16 15 C -0.10 -2.34 5.96 31.60 0.19 -2.16 16 16 C -0.12 -2.24 6.90 31.86 0.22 -2.02 16 17 C -0.11 -2.26 6.55 31.65 0.21 -2.05 16 18 C 0.08 2.28 3.87 31.64 0.12 2.40 16 19 H 0.07 2.29 6.74 -2.39 -0.02 2.27 16 20 O -0.37 -10.31 11.09 -148.98 -1.65 -11.97 16 21 C 0.04 1.06 7.80 73.63 0.57 1.64 16 22 C -0.14 -3.60 6.48 32.79 0.21 -3.39 16 23 C -0.16 -6.72 9.93 30.62 0.30 -6.42 16 24 C -0.17 -7.44 8.92 30.62 0.27 -7.17 16 25 H 0.26 15.64 6.13 -92.71 -0.57 15.07 16 26 H 0.03 1.72 7.48 -2.39 -0.02 1.70 16 27 H 0.05 2.39 8.09 -2.39 -0.02 2.37 16 28 H 0.07 1.75 7.76 -2.39 -0.02 1.73 16 29 H 0.11 1.92 7.24 -2.39 -0.02 1.90 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.66 8.03 -2.39 -0.02 1.64 16 34 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 35 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.13 2.46 7.24 -2.39 -0.02 2.44 16 37 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 38 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 41 H 0.07 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -67.41 332.57 5.26 -62.15 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.21 Total: 22.50 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.52 Total: -29.42 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.29 Total: -55.13 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.82 Total: -51.22 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.12 kcal Total: -67.41 5.26 -62.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869716239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.315 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds