Wall clock time and date at job start Tue Mar 31 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38503 * 120.84616 * 2 1 4 4 F 1.35106 * 120.43133 * 0.02562 * 3 2 1 5 5 N 1.32761 * 119.13840 * 180.02562 * 3 2 1 6 6 C 1.31784 * 120.96354 * 359.97438 * 5 3 2 7 7 N 1.31736 * 121.85773 * 0.02562 * 6 5 3 8 8 C 1.33074 * 120.75766 * 359.70153 * 7 6 5 9 9 N 1.38572 * 120.51834 * 180.31254 * 8 7 6 10 10 C 1.46499 * 119.99924 * 0.25994 * 9 8 7 11 11 C 1.53037 * 109.46168 * 275.03125 * 10 9 8 12 12 C 1.53199 * 109.31564 * 178.60254 * 11 10 9 13 13 N 1.46922 * 108.76602 * 54.64848 * 12 11 10 14 14 C 1.36939 * 120.62870 * 126.36338 * 13 12 11 15 15 H 1.07997 * 120.00219 * 208.01890 * 14 13 12 16 16 C 1.38816 * 119.99779 * 28.02824 * 14 13 12 17 17 N 1.31613 * 120.00346 * 17.51546 * 16 14 13 18 18 Si 1.86803 * 119.99575 * 197.52478 * 16 14 13 19 19 H 1.48492 * 109.47174 * 94.06356 * 18 16 14 20 20 H 1.48504 * 109.46881 * 214.06309 * 18 16 14 21 21 H 1.48499 * 109.46862 * 334.05749 * 18 16 14 22 22 C 1.46926 * 118.73900 * 306.38774 * 13 12 11 23 23 C 1.53037 * 109.46288 * 154.97266 * 10 9 8 24 24 H 1.08992 * 109.47041 * 90.00749 * 1 2 3 25 25 H 1.09000 * 109.47108 * 330.00437 * 1 2 3 26 26 H 1.09003 * 109.46913 * 210.00733 * 1 2 3 27 27 H 1.07992 * 119.07259 * 179.97438 * 6 5 3 28 28 H 0.96996 * 120.00504 * 180.26090 * 9 8 7 29 29 H 1.09006 * 109.45767 * 35.00064 * 10 9 8 30 30 H 1.09000 * 109.49616 * 298.56062 * 11 10 9 31 31 H 1.08995 * 109.50143 * 58.65638 * 11 10 9 32 32 H 1.09010 * 109.59236 * 294.86408 * 12 11 10 33 33 H 1.09000 * 109.70412 * 174.50286 * 12 11 10 34 34 H 0.97000 * 120.00279 * 180.02562 * 17 16 14 35 35 H 1.08996 * 109.58646 * 293.81788 * 22 13 12 36 36 H 1.09001 * 109.70338 * 173.46610 * 22 13 12 37 37 H 1.09005 * 109.49533 * 301.33796 * 23 10 9 38 38 H 1.09001 * 109.50162 * 61.40504 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1891 0.0000 4 9 1.5679 2.3739 0.0005 5 7 3.5442 1.1496 -0.0005 6 6 4.1882 -0.0002 -0.0005 7 7 3.5519 -1.1536 -0.0005 8 6 2.2218 -1.1971 0.0054 9 7 1.5575 -2.4132 0.0119 10 6 2.3198 -3.6642 0.0180 11 6 2.6926 -4.0411 -1.4176 12 6 3.5193 -5.3309 -1.4045 13 7 2.7667 -6.3673 -0.6848 14 6 2.5218 -7.5825 -1.2666 15 1 1.6462 -8.1490 -0.9859 16 6 3.3992 -8.0864 -2.2170 17 7 4.6158 -7.5942 -2.3161 18 14 2.8530 -9.4630 -3.3555 19 1 2.3406 -8.8832 -4.6229 20 1 4.0071 -10.3505 -3.6482 21 1 1.7773 -10.2496 -2.7003 22 6 2.2815 -6.0750 0.6709 23 6 1.4689 -4.7768 0.6345 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5140 27 1 5.2682 0.0033 -0.0014 28 1 0.5879 -2.4362 0.0124 29 1 3.2280 -3.5332 0.6065 30 1 1.7847 -4.1967 -2.0003 31 1 3.2788 -3.2380 -1.8641 32 1 4.4686 -5.1515 -0.8996 33 1 3.7056 -5.6584 -2.4273 34 1 5.2288 -7.9460 -2.9805 35 1 3.1297 -5.9564 1.3450 36 1 1.6495 -6.8920 1.0192 37 1 1.1841 -4.4973 1.6489 38 1 0.5723 -4.9251 0.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872447091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:02 Heat of formation + Delta-G solvation = 26.723123 kcal Electronic energy + Delta-G solvation = -21899.622668 eV Core-core repulsion = 18499.258185 eV Total energy + Delta-G solvation = -3400.364483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.23582 -40.96958 -38.16523 -35.79705 -33.60869 -33.05864 -31.53293 -30.05212 -29.31039 -27.61768 -25.20573 -23.39910 -23.11561 -22.23156 -21.61698 -19.60466 -18.60392 -18.11611 -16.88969 -16.43907 -16.19995 -15.24769 -14.75388 -14.60285 -14.49963 -14.39498 -13.90403 -13.73889 -13.58392 -13.23060 -13.08370 -12.93873 -12.67858 -12.34719 -11.59501 -11.50193 -11.16536 -10.90232 -10.78232 -10.72359 -10.39757 -10.25428 -10.05705 -9.81339 -9.67712 -9.51513 -9.33464 -8.52538 -8.06670 -6.74030 -5.83097 -3.26045 0.80164 1.20981 2.97530 3.35131 3.38105 3.42421 3.43611 3.70661 4.13888 4.45819 4.54782 4.65547 4.80622 5.19284 5.32270 5.34287 5.36659 5.42943 5.51975 5.56053 5.72950 5.75857 5.99597 6.16332 6.18658 6.34814 6.44763 6.56864 6.59017 6.64903 6.70667 6.86234 7.13808 7.29969 7.47801 7.62712 7.75940 8.15910 8.40451 9.16543 9.79601 10.35863 11.25458 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.003778 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.140796 B = 7410.286101 C = 7676.980592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.291 4.291 3 C 0.375 3.625 4 F -0.106 7.106 5 N -0.598 5.598 6 C 0.370 3.630 7 N -0.570 5.570 8 C 0.467 3.533 9 N -0.693 5.693 10 C 0.156 3.844 11 C -0.144 4.144 12 C 0.175 3.825 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.150 3.850 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.205 0.795 28 H 0.407 0.593 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 14.152 5.300 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.304 4.304 3 C 0.217 3.783 4 F -0.085 7.085 5 N -0.324 5.324 6 C 0.080 3.920 7 N -0.294 5.294 8 C 0.221 3.779 9 N -0.322 5.322 10 C 0.053 3.947 11 C -0.185 4.185 12 C 0.048 3.952 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.023 3.977 23 C -0.181 4.181 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.221 0.779 28 H 0.245 0.755 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.524 13.896 5.197 15.831 hybrid contribution -1.517 -0.335 -0.681 1.696 sum -7.040 13.561 4.515 15.933 Atomic orbital electron populations 1.20412 0.88965 1.03115 1.02699 1.20563 0.98920 0.91937 1.18933 1.17831 0.87371 0.80304 0.92770 1.91610 1.79432 1.44800 1.92686 1.67823 1.07565 1.33005 1.23994 1.24527 1.00482 0.80157 0.86813 1.68131 1.07388 1.30777 1.23148 1.18221 0.88136 0.85867 0.85642 1.45244 1.08817 1.02714 1.75461 1.21175 0.94762 0.80368 0.98415 1.22571 1.01049 1.00293 0.94585 1.20754 0.91002 0.84077 0.99354 1.44105 1.64210 1.12401 1.10776 1.19193 1.04061 0.95883 1.19500 0.91613 1.25047 0.94555 0.98271 1.01575 1.70033 1.04178 1.44508 1.35679 0.86286 0.77680 0.81629 0.81231 1.21478 1.21729 1.20377 1.20816 0.95385 0.93148 0.88396 1.22375 0.99559 0.96975 0.99200 0.90939 0.90922 0.91423 0.77851 0.75550 0.89376 0.92880 0.92766 0.95987 0.89323 0.93557 0.96115 0.92298 0.92622 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.49 36.01 0.34 -0.50 16 2 C -0.29 -3.57 5.94 -104.08 -0.62 -4.18 16 3 C 0.38 4.98 8.45 -17.05 -0.14 4.84 16 4 F -0.11 -1.34 16.63 2.25 0.04 -1.30 16 5 N -0.60 -8.25 10.45 -14.98 -0.16 -8.40 16 6 C 0.37 4.72 12.28 -92.21 -1.13 3.59 16 7 N -0.57 -8.32 9.35 -13.84 -0.13 -8.45 16 8 C 0.47 6.42 7.47 -154.75 -1.16 5.27 16 9 N -0.69 -9.08 5.13 -53.77 -0.28 -9.36 16 10 C 0.16 2.48 2.44 -67.89 -0.17 2.31 16 11 C -0.14 -2.69 5.66 -26.61 -0.15 -2.84 16 12 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 13 N -0.59 -14.24 2.99 -172.31 -0.52 -14.75 16 14 C -0.26 -6.84 9.58 -15.06 -0.14 -6.99 16 15 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 16 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 17 N -0.90 -25.67 11.22 55.49 0.62 -25.05 16 18 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.15 2.94 6.51 -3.71 -0.02 2.92 16 23 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.59 7.73 -51.93 -0.40 0.19 16 26 H 0.07 0.52 6.66 -51.93 -0.35 0.18 16 27 H 0.21 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.41 4.40 6.72 -40.82 -0.27 4.12 16 29 H 0.09 1.54 7.57 -51.93 -0.39 1.15 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -29.79 314.19 -9.23 -39.02 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.07 Total: 1.20 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.45 Total: 6.11 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.45 Total: -66.01 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.79 -9.23 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872447091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.748 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds