Wall clock time and date at job start Tue Mar 31 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38503 * 120.84616 * 2 1 4 4 F 1.35106 * 120.43133 * 0.02562 * 3 2 1 5 5 N 1.32761 * 119.13840 * 180.02562 * 3 2 1 6 6 C 1.31784 * 120.96354 * 359.97438 * 5 3 2 7 7 N 1.31736 * 121.85773 * 0.02562 * 6 5 3 8 8 C 1.33074 * 120.75766 * 359.70153 * 7 6 5 9 9 N 1.38572 * 120.51834 * 180.31254 * 8 7 6 10 10 C 1.46499 * 119.99924 * 0.25994 * 9 8 7 11 11 C 1.53037 * 109.46168 * 275.03125 * 10 9 8 12 12 C 1.53199 * 109.31564 * 178.60254 * 11 10 9 13 13 N 1.46922 * 108.76602 * 54.64848 * 12 11 10 14 14 C 1.36939 * 120.62870 * 126.36338 * 13 12 11 15 15 H 1.07997 * 120.00219 * 208.01890 * 14 13 12 16 16 C 1.38816 * 119.99779 * 28.02824 * 14 13 12 17 17 N 1.31613 * 120.00346 * 17.51546 * 16 14 13 18 18 Si 1.86803 * 119.99575 * 197.52478 * 16 14 13 19 19 H 1.48492 * 109.47174 * 94.06356 * 18 16 14 20 20 H 1.48504 * 109.46881 * 214.06309 * 18 16 14 21 21 H 1.48499 * 109.46862 * 334.05749 * 18 16 14 22 22 C 1.46926 * 118.73900 * 306.38774 * 13 12 11 23 23 C 1.53037 * 109.46288 * 154.97266 * 10 9 8 24 24 H 1.08992 * 109.47041 * 90.00749 * 1 2 3 25 25 H 1.09000 * 109.47108 * 330.00437 * 1 2 3 26 26 H 1.09003 * 109.46913 * 210.00733 * 1 2 3 27 27 H 1.07992 * 119.07259 * 179.97438 * 6 5 3 28 28 H 0.96996 * 120.00504 * 180.26090 * 9 8 7 29 29 H 1.09006 * 109.45767 * 35.00064 * 10 9 8 30 30 H 1.09000 * 109.49616 * 298.56062 * 11 10 9 31 31 H 1.08995 * 109.50143 * 58.65638 * 11 10 9 32 32 H 1.09010 * 109.59236 * 294.86408 * 12 11 10 33 33 H 1.09000 * 109.70412 * 174.50286 * 12 11 10 34 34 H 0.97000 * 120.00279 * 180.02562 * 17 16 14 35 35 H 1.08996 * 109.58646 * 293.81788 * 22 13 12 36 36 H 1.09001 * 109.70338 * 173.46610 * 22 13 12 37 37 H 1.09005 * 109.49533 * 301.33796 * 23 10 9 38 38 H 1.09001 * 109.50162 * 61.40504 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1891 0.0000 4 9 1.5679 2.3739 0.0005 5 7 3.5442 1.1496 -0.0005 6 6 4.1882 -0.0002 -0.0005 7 7 3.5519 -1.1536 -0.0005 8 6 2.2218 -1.1971 0.0054 9 7 1.5575 -2.4132 0.0119 10 6 2.3198 -3.6642 0.0180 11 6 2.6926 -4.0411 -1.4176 12 6 3.5193 -5.3309 -1.4045 13 7 2.7667 -6.3673 -0.6848 14 6 2.5218 -7.5825 -1.2666 15 1 1.6462 -8.1490 -0.9859 16 6 3.3992 -8.0864 -2.2170 17 7 4.6158 -7.5942 -2.3161 18 14 2.8530 -9.4630 -3.3555 19 1 2.3406 -8.8832 -4.6229 20 1 4.0071 -10.3505 -3.6482 21 1 1.7773 -10.2496 -2.7003 22 6 2.2815 -6.0750 0.6709 23 6 1.4689 -4.7768 0.6345 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5140 27 1 5.2682 0.0033 -0.0014 28 1 0.5879 -2.4362 0.0124 29 1 3.2280 -3.5332 0.6065 30 1 1.7847 -4.1967 -2.0003 31 1 3.2788 -3.2380 -1.8641 32 1 4.4686 -5.1515 -0.8996 33 1 3.7056 -5.6584 -2.4273 34 1 5.2288 -7.9460 -2.9805 35 1 3.1297 -5.9564 1.3450 36 1 1.6495 -6.8920 1.0192 37 1 1.1841 -4.4973 1.6489 38 1 0.5723 -4.9251 0.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872447091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:02 Heat of formation + Delta-G solvation = 9.813938 kcal Electronic energy + Delta-G solvation = -21900.355906 eV Core-core repulsion = 18499.258185 eV Total energy + Delta-G solvation = -3401.097721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.21569 -41.99076 -39.59751 -37.15978 -34.88010 -34.29672 -33.05027 -31.64959 -30.82868 -28.51027 -26.94513 -24.71942 -24.14147 -23.72820 -23.06811 -21.09105 -19.74686 -19.20304 -18.67280 -17.43288 -17.33594 -16.86778 -16.25121 -15.67875 -15.54679 -15.44056 -15.32766 -15.29372 -14.83646 -14.67666 -14.46150 -14.02552 -13.93599 -13.28459 -13.15855 -13.02388 -12.83892 -12.61389 -12.38857 -12.07027 -11.95964 -11.81699 -11.71170 -11.34476 -11.29501 -10.64252 -10.52192 -10.39220 -9.15199 -8.69540 -7.86824 -5.32159 -0.17338 0.16957 1.47828 1.49524 1.58309 1.90902 2.40563 2.52184 2.69973 3.20054 3.29134 3.56228 3.69845 3.76736 3.89572 3.90379 4.10344 4.36818 4.49634 4.50675 4.68746 4.69307 4.78231 4.84278 4.89874 5.02084 5.08444 5.09245 5.16411 5.33798 5.39897 5.48438 5.62272 5.66434 5.73667 5.97247 6.39721 6.49731 7.15306 7.16422 7.86543 8.37971 9.19832 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.003778 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.140796 B = 7410.286101 C = 7676.980592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.279 4.279 3 C 0.360 3.640 4 F -0.104 7.104 5 N -0.611 5.611 6 C 0.366 3.634 7 N -0.595 5.595 8 C 0.454 3.546 9 N -0.684 5.684 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.263 4.263 15 H 0.071 0.929 16 C -0.050 4.050 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.265 1.265 22 C 0.143 3.857 23 C -0.125 4.125 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.232 0.768 28 H 0.421 0.579 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.051 0.949 32 H -0.004 1.004 33 H 0.051 0.949 34 H 0.249 0.751 35 H 0.015 0.985 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 14.889 6.010 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.291 4.291 3 C 0.202 3.798 4 F -0.083 7.083 5 N -0.337 5.337 6 C 0.077 3.923 7 N -0.320 5.320 8 C 0.209 3.791 9 N -0.315 5.315 10 C 0.067 3.933 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.089 0.911 16 C -0.245 4.245 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.215 1.215 20 H -0.224 1.224 21 H -0.190 1.190 22 C 0.017 3.983 23 C -0.165 4.165 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.248 0.752 28 H 0.261 0.739 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.703 14.674 5.935 17.604 hybrid contribution -0.824 -0.499 -0.850 1.285 sum -8.527 14.175 5.085 17.307 Atomic orbital electron populations 1.20542 0.86496 1.04482 1.03745 1.20779 1.00571 0.90765 1.16981 1.18037 0.87488 0.80823 0.93417 1.91613 1.79329 1.44660 1.92713 1.67852 1.08163 1.33488 1.24186 1.25053 1.01576 0.79467 0.86167 1.68141 1.08235 1.31758 1.23851 1.18394 0.88181 0.86397 0.86128 1.44860 1.09209 1.01476 1.75990 1.20740 0.94838 0.81804 0.95882 1.22292 0.99938 0.97592 0.96911 1.20470 0.90976 0.86053 0.96790 1.44352 1.64362 1.11931 1.12701 1.19557 1.03827 0.96594 1.19326 0.91142 1.25788 0.94624 1.00855 1.03259 1.70190 1.05286 1.46201 1.36407 0.85294 0.77169 0.79007 0.79233 1.21486 1.22404 1.18994 1.21004 0.95695 0.95601 0.85975 1.22166 0.98629 0.94301 1.01379 0.89916 0.89949 0.89706 0.75242 0.73863 0.90835 0.92949 0.93000 0.98581 0.93045 0.94183 0.96665 0.91764 0.89192 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.49 71.24 0.68 -0.71 16 2 C -0.28 -6.18 5.94 -19.51 -0.12 -6.29 16 3 C 0.36 8.96 8.45 84.62 0.71 9.67 16 4 F -0.10 -2.45 16.63 44.97 0.75 -1.70 16 5 N -0.61 -16.11 10.45 -201.31 -2.10 -18.21 16 6 C 0.37 8.94 12.28 180.90 2.22 11.16 16 7 N -0.59 -16.68 9.35 -197.71 -1.85 -18.53 16 8 C 0.45 11.57 7.47 133.08 0.99 12.56 16 9 N -0.68 -16.07 5.13 -324.03 -1.66 -17.73 16 10 C 0.17 5.16 2.44 45.02 0.11 5.27 16 11 C -0.13 -4.68 5.66 30.67 0.17 -4.51 16 12 C 0.18 8.75 5.31 86.37 0.46 9.21 16 13 N -0.61 -29.45 2.99 -699.08 -2.09 -31.54 16 14 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 15 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 16 C -0.05 -2.74 4.90 84.86 0.42 -2.32 16 17 N -0.93 -55.04 11.22 21.65 0.24 -54.80 16 18 Si 0.96 44.14 29.59 68.60 2.03 46.17 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 C 0.14 5.44 6.51 86.36 0.56 6.01 16 23 C -0.13 -3.55 5.55 30.67 0.17 -3.38 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.08 7.73 -2.39 -0.02 1.06 16 26 H 0.08 0.96 6.66 -2.39 -0.02 0.95 16 27 H 0.23 3.97 8.06 -2.91 -0.02 3.94 16 28 H 0.42 7.51 6.72 -92.71 -0.62 6.89 16 29 H 0.07 2.48 7.57 -2.38 -0.02 2.46 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 33 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 34 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 37 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.34 314.19 2.96 -62.38 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.46 Total: 10.51 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 7.19 Total: 23.44 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -7.46 Total: -140.81 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.75 Total: -1.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.34 2.96 -62.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872447091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.196 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds