Wall clock time and date at job start Tue Mar 31 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00336 * 2 1 4 4 H 1.48495 * 109.47123 * 240.00303 * 3 2 1 5 5 H 1.48501 * 109.46749 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47252 * 119.99792 * 3 2 1 7 7 C 1.37885 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47044 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99992 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99739 * 180.02562 * 11 10 9 14 14 C 1.46427 * 119.33153 * 352.82438 * 13 11 10 15 15 C 1.53147 * 109.47396 * 118.21471 * 14 13 11 16 16 N 1.46656 * 109.21205 * 82.55078 * 15 14 13 17 17 C 1.33845 * 120.97287 * 286.92636 * 16 15 14 18 18 O 1.21283 * 120.00217 * 180.15608 * 17 16 15 19 19 C 1.51464 * 119.99809 * 0.13994 * 17 16 15 20 20 C 1.46192 * 119.32876 * 172.85021 * 13 11 10 21 21 C 1.53353 * 113.65486 * 12.59397 * 20 13 11 22 22 C 1.53861 * 86.93677 * 89.83245 * 21 20 13 23 23 C 1.53261 * 113.86123 * 110.79363 * 20 13 11 24 24 H 0.97001 * 120.00151 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47469 * 59.99715 * 9 7 2 26 26 H 1.09005 * 109.46777 * 299.99905 * 9 7 2 27 27 H 1.08995 * 109.47297 * 59.99117 * 10 9 7 28 28 H 1.08997 * 109.46732 * 299.99394 * 10 9 7 29 29 H 1.09006 * 109.47217 * 238.21846 * 14 13 11 30 30 H 1.08997 * 109.46979 * 358.21070 * 14 13 11 31 31 H 1.09000 * 109.51272 * 202.47051 * 15 14 13 32 32 H 1.09001 * 109.51174 * 322.57218 * 15 14 13 33 33 H 0.96993 * 119.51403 * 106.92611 * 16 15 14 34 34 H 1.09002 * 109.69506 * 309.88295 * 19 17 16 35 35 H 1.08996 * 109.69891 * 189.29286 * 19 17 16 36 36 H 1.09006 * 113.63961 * 204.34039 * 21 20 13 37 37 H 1.09001 * 113.64092 * 335.32028 * 21 20 13 38 38 H 1.09004 * 113.60825 * 270.54099 * 22 21 20 39 39 H 1.09008 * 113.60721 * 139.66779 * 22 21 20 40 40 H 1.09004 * 113.63239 * 24.87245 * 23 20 13 41 41 H 1.08999 * 113.63984 * 155.74972 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0033 12 8 0.2789 -4.9672 -0.0041 13 7 2.1655 -6.1344 -0.0028 14 6 3.6213 -6.1222 -0.1601 15 6 4.2748 -6.7205 1.0891 16 7 4.2672 -8.1832 0.9841 17 6 3.1337 -8.8788 1.1351 18 8 3.1482 -10.0884 1.0476 19 6 1.8329 -8.1554 1.4156 20 6 1.4281 -7.3869 0.1540 21 6 -0.0895 -7.2311 -0.0017 22 6 0.1201 -7.4992 -1.5022 23 6 1.4025 -8.2537 -1.1096 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8713 -3.6048 0.8889 28 1 2.8724 -3.6040 -0.8910 29 1 3.8974 -6.7136 -1.0332 30 1 3.9637 -5.0961 -0.2933 31 1 5.3027 -6.3663 1.1673 32 1 3.7162 -6.4151 1.9739 33 1 5.0959 -8.6536 0.8027 34 1 1.9712 -7.4581 2.2420 35 1 1.0579 -8.8783 1.6701 36 1 -0.6629 -8.0075 0.5050 37 1 -0.4504 -6.2260 0.2165 38 1 0.3056 -6.5969 -2.0851 39 1 -0.6451 -8.1386 -1.9425 40 1 2.2405 -8.0706 -1.7822 41 1 1.2438 -9.3134 -0.9096 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874920409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:13 Heat of formation + Delta-G solvation = -21.706222 kcal Electronic energy + Delta-G solvation = -23112.887491 eV Core-core repulsion = 19801.590507 eV Total energy + Delta-G solvation = -3311.296984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45199 -39.37635 -37.40507 -36.40651 -33.92805 -33.42203 -30.99151 -30.52255 -28.64500 -26.07801 -25.64295 -24.07150 -23.12821 -21.82144 -20.12782 -19.67321 -18.53759 -17.56635 -16.92900 -16.82168 -16.09524 -15.81183 -15.50378 -14.72656 -14.50133 -14.29056 -13.98400 -13.72222 -13.41287 -13.31152 -12.76350 -12.53377 -12.32997 -12.19631 -12.02285 -11.91135 -11.63913 -11.20231 -10.98718 -10.91412 -10.65606 -10.53062 -10.44824 -10.04891 -9.86415 -9.61604 -9.49291 -9.17903 -8.58692 -8.37253 -8.07316 -6.01643 -4.06502 2.46114 2.95536 2.97232 3.08464 3.30190 3.35917 3.36714 4.18434 4.41781 4.59385 4.65712 4.72685 4.77560 4.87905 4.91756 5.05908 5.23508 5.25973 5.33629 5.37342 5.43016 5.57596 5.71431 5.82725 5.87410 6.01745 6.04491 6.07368 6.27224 6.40361 6.53686 6.57276 6.78084 6.99156 7.16892 7.60722 7.67129 7.77765 7.99768 8.03978 8.32536 8.73014 9.01280 9.57511 11.09064 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.004384 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.615573 B = 6385.384772 C = 7071.141964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.132 4.132 11 C 0.519 3.481 12 O -0.506 6.506 13 N -0.604 5.604 14 C 0.086 3.914 15 C 0.090 3.910 16 N -0.726 5.726 17 C 0.525 3.475 18 O -0.552 6.552 19 C -0.138 4.138 20 C 0.155 3.845 21 C -0.202 4.202 22 C -0.128 4.128 23 C -0.147 4.147 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.178 0.822 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -14.658 1.010 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.311 3.689 12 O -0.383 6.383 13 N -0.339 5.339 14 C -0.038 4.038 15 C -0.036 4.036 16 N -0.379 5.379 17 C 0.312 3.688 18 O -0.429 6.429 19 C -0.179 4.179 20 C 0.068 3.932 21 C -0.237 4.237 22 C -0.165 4.165 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.194 0.806 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.425 -15.050 1.004 16.812 hybrid contribution 1.127 0.580 -0.114 1.273 sum 8.552 -14.470 0.891 16.832 Atomic orbital electron populations 1.69975 1.06044 1.26775 1.49873 1.25006 0.94804 0.99187 0.95217 0.86670 0.79578 0.83255 0.78529 1.20270 1.21279 1.20253 1.21147 0.92828 0.90981 1.51813 0.92707 1.18909 0.93124 0.89260 0.98711 1.21982 1.00869 0.91909 1.02364 1.21787 0.88357 0.85396 0.73363 1.89946 1.14287 1.84898 1.49167 1.47633 1.06564 1.05379 1.74285 1.22181 0.80097 1.03797 0.97718 1.22165 1.02900 0.79388 0.99116 1.45917 1.10677 1.08010 1.73270 1.20672 0.85910 0.87271 0.74956 1.90734 1.86629 1.14305 1.51273 1.22362 0.95279 1.00627 0.99619 1.21020 0.95010 0.84539 0.92597 1.24940 0.92267 1.10535 0.95945 1.22670 0.96553 0.99689 0.97611 1.23347 0.99195 0.99164 0.96862 0.92841 0.95746 0.95718 0.89991 0.90162 0.90756 0.87175 0.88185 0.89764 0.76565 0.88834 0.87544 0.91292 0.80649 0.90378 0.92007 0.91818 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.04 0.93 4.26 -27.88 -0.12 0.81 16 10 C -0.13 -2.34 3.98 -27.88 -0.11 -2.46 16 11 C 0.52 8.73 7.47 -10.99 -0.08 8.65 16 12 O -0.51 -10.19 11.46 5.56 0.06 -10.12 16 13 N -0.60 -7.80 2.61 -158.57 -0.41 -8.22 16 14 C 0.09 0.80 6.03 -4.01 -0.02 0.78 16 15 C 0.09 0.66 6.44 -3.88 -0.02 0.64 16 16 N -0.73 -6.46 5.28 -60.06 -0.32 -6.78 16 17 C 0.52 6.38 6.43 -11.03 -0.07 6.31 16 18 O -0.55 -8.68 17.92 5.55 0.10 -8.58 16 19 C -0.14 -1.61 5.02 -27.42 -0.14 -1.75 16 20 C 0.15 1.99 0.91 -131.59 -0.12 1.87 16 21 C -0.20 -2.91 6.67 -26.10 -0.17 -3.08 16 22 C -0.13 -1.77 7.72 -25.82 -0.20 -1.97 16 23 C -0.15 -1.87 6.51 -26.13 -0.17 -2.04 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 28 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 29 H 0.07 0.67 7.61 -51.93 -0.40 0.27 16 30 H 0.11 0.94 5.69 -51.93 -0.30 0.65 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.68 7.01 -51.93 -0.36 0.32 16 33 H 0.40 2.98 8.91 -40.82 -0.36 2.61 16 34 H 0.09 1.02 7.14 -51.93 -0.37 0.65 16 35 H 0.11 1.22 7.79 -51.93 -0.40 0.82 16 36 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 37 H 0.18 3.12 3.92 -58.90 -0.23 2.89 16 38 H 0.08 1.22 7.98 -51.93 -0.41 0.80 16 39 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.06 0.80 7.63 -51.93 -0.40 0.40 16 41 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -32.91 321.03 -7.75 -40.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.09 Total: 3.12 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.64 Total: -5.11 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.01 Total: -40.60 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.16 Total: -18.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.91 -7.75 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874920409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.954 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds