Wall clock time and date at job start Tue Mar 31 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00336 * 2 1 4 4 H 1.48495 * 109.47123 * 240.00303 * 3 2 1 5 5 H 1.48501 * 109.46749 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47252 * 119.99792 * 3 2 1 7 7 C 1.37885 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47044 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99992 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99739 * 180.02562 * 11 10 9 14 14 C 1.46427 * 119.33153 * 352.82438 * 13 11 10 15 15 C 1.53147 * 109.47396 * 118.21471 * 14 13 11 16 16 N 1.46656 * 109.21205 * 82.55078 * 15 14 13 17 17 C 1.33845 * 120.97287 * 286.92636 * 16 15 14 18 18 O 1.21283 * 120.00217 * 180.15608 * 17 16 15 19 19 C 1.51464 * 119.99809 * 0.13994 * 17 16 15 20 20 C 1.46192 * 119.32876 * 172.85021 * 13 11 10 21 21 C 1.53353 * 113.65486 * 12.59397 * 20 13 11 22 22 C 1.53861 * 86.93677 * 89.83245 * 21 20 13 23 23 C 1.53261 * 113.86123 * 110.79363 * 20 13 11 24 24 H 0.97001 * 120.00151 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47469 * 59.99715 * 9 7 2 26 26 H 1.09005 * 109.46777 * 299.99905 * 9 7 2 27 27 H 1.08995 * 109.47297 * 59.99117 * 10 9 7 28 28 H 1.08997 * 109.46732 * 299.99394 * 10 9 7 29 29 H 1.09006 * 109.47217 * 238.21846 * 14 13 11 30 30 H 1.08997 * 109.46979 * 358.21070 * 14 13 11 31 31 H 1.09000 * 109.51272 * 202.47051 * 15 14 13 32 32 H 1.09001 * 109.51174 * 322.57218 * 15 14 13 33 33 H 0.96993 * 119.51403 * 106.92611 * 16 15 14 34 34 H 1.09002 * 109.69506 * 309.88295 * 19 17 16 35 35 H 1.08996 * 109.69891 * 189.29286 * 19 17 16 36 36 H 1.09006 * 113.63961 * 204.34039 * 21 20 13 37 37 H 1.09001 * 113.64092 * 335.32028 * 21 20 13 38 38 H 1.09004 * 113.60825 * 270.54099 * 22 21 20 39 39 H 1.09008 * 113.60721 * 139.66779 * 22 21 20 40 40 H 1.09004 * 113.63239 * 24.87245 * 23 20 13 41 41 H 1.08999 * 113.63984 * 155.74972 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0033 12 8 0.2789 -4.9672 -0.0041 13 7 2.1655 -6.1344 -0.0028 14 6 3.6213 -6.1222 -0.1601 15 6 4.2748 -6.7205 1.0891 16 7 4.2672 -8.1832 0.9841 17 6 3.1337 -8.8788 1.1351 18 8 3.1482 -10.0884 1.0476 19 6 1.8329 -8.1554 1.4156 20 6 1.4281 -7.3869 0.1540 21 6 -0.0895 -7.2311 -0.0017 22 6 0.1201 -7.4992 -1.5022 23 6 1.4025 -8.2537 -1.1096 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8713 -3.6048 0.8889 28 1 2.8724 -3.6040 -0.8910 29 1 3.8974 -6.7136 -1.0332 30 1 3.9637 -5.0961 -0.2933 31 1 5.3027 -6.3663 1.1673 32 1 3.7162 -6.4151 1.9739 33 1 5.0959 -8.6536 0.8027 34 1 1.9712 -7.4581 2.2420 35 1 1.0579 -8.8783 1.6701 36 1 -0.6629 -8.0075 0.5050 37 1 -0.4504 -6.2260 0.2165 38 1 0.3056 -6.5969 -2.0851 39 1 -0.6451 -8.1386 -1.9425 40 1 2.2405 -8.0706 -1.7822 41 1 1.2438 -9.3134 -0.9096 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874920409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:12 Heat of formation + Delta-G solvation = -45.152733 kcal Electronic energy + Delta-G solvation = -23113.904208 eV Core-core repulsion = 19801.590507 eV Total energy + Delta-G solvation = -3312.313701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53818 -40.44253 -38.63000 -37.33803 -35.51502 -34.85164 -32.77008 -31.53499 -29.52158 -27.84230 -26.77512 -25.15966 -24.30272 -23.31595 -21.09412 -20.91659 -19.76104 -18.72385 -18.21458 -17.77977 -17.58663 -16.86252 -16.70310 -16.35815 -15.99761 -15.56812 -14.89110 -14.85127 -14.50542 -14.46672 -14.16971 -13.72699 -13.67283 -13.43681 -13.26158 -12.96054 -12.77090 -12.73373 -12.59550 -12.41793 -12.13994 -11.82771 -11.60643 -11.51252 -11.46244 -11.20711 -10.87461 -10.50498 -10.37949 -9.63012 -9.35453 -8.12678 -6.25591 1.46371 1.49569 1.51531 1.57055 1.67486 1.88544 2.32149 2.47005 3.20692 3.21246 3.58433 3.63180 3.80169 3.91892 3.99340 4.04838 4.17859 4.20026 4.34982 4.40905 4.50414 4.60373 4.66790 4.69867 4.76707 4.85325 4.94232 5.01148 5.15271 5.15874 5.30667 5.38590 5.57430 5.71644 5.85401 5.91639 5.98219 6.19543 6.23891 6.45934 6.94415 7.19227 7.43332 7.46651 8.99346 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.004384 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.615573 B = 6385.384772 C = 7071.141964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.517 3.483 12 O -0.550 6.550 13 N -0.592 5.592 14 C 0.076 3.924 15 C 0.092 3.908 16 N -0.711 5.711 17 C 0.525 3.475 18 O -0.591 6.591 19 C -0.133 4.133 20 C 0.157 3.843 21 C -0.209 4.209 22 C -0.129 4.129 23 C -0.133 4.133 24 H 0.261 0.739 25 H -0.019 1.019 26 H -0.015 1.015 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.850 -14.867 1.270 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.309 3.691 12 O -0.430 6.430 13 N -0.325 5.325 14 C -0.046 4.046 15 C -0.032 4.032 16 N -0.363 5.363 17 C 0.313 3.687 18 O -0.472 6.472 19 C -0.174 4.174 20 C 0.071 3.929 21 C -0.245 4.245 22 C -0.166 4.166 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.000 1.000 26 H 0.003 0.997 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.161 0.839 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.945 -15.271 1.262 18.830 hybrid contribution 0.027 0.627 -0.208 0.661 sum 10.972 -14.643 1.055 18.328 Atomic orbital electron populations 1.70161 1.08245 1.27660 1.51685 1.26059 0.95592 1.03688 0.94886 0.85468 0.78095 0.77822 0.79428 1.18838 1.21857 1.18646 1.21694 0.94039 0.91560 1.50388 0.90424 1.18688 0.93718 0.92278 0.94799 1.21735 0.99366 0.89819 1.04835 1.21594 0.87777 0.86279 0.73472 1.90031 1.16065 1.85692 1.51215 1.47577 1.08140 1.04087 1.72700 1.22556 0.77500 1.05278 0.99310 1.22319 1.05183 0.77991 0.97726 1.45856 1.10166 1.08750 1.71495 1.20651 0.86654 0.86734 0.74699 1.90724 1.87249 1.15932 1.53320 1.22296 0.95537 1.00556 0.99034 1.20975 0.93922 0.84464 0.93506 1.24797 0.93907 1.09128 0.96643 1.22611 0.97840 0.99164 0.97027 1.23225 0.98446 0.98977 0.96494 0.93062 1.00016 0.99685 0.87142 0.87786 0.89721 0.85705 0.83904 0.89995 0.75336 0.87914 0.87503 0.90072 0.83546 0.92564 0.91015 0.91249 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.54 -28.61 9.11 25.60 0.23 -28.37 16 8 H 0.08 3.68 7.74 -2.92 -0.02 3.66 16 9 C 0.04 2.19 4.26 29.85 0.13 2.32 16 10 C -0.12 -4.07 3.98 29.85 0.12 -3.95 16 11 C 0.52 17.35 7.47 87.66 0.65 18.00 16 12 O -0.55 -23.30 11.46 -3.02 -0.03 -23.33 16 13 N -0.59 -14.33 2.61 -773.99 -2.02 -16.35 16 14 C 0.08 1.14 6.03 86.44 0.52 1.66 16 15 C 0.09 0.95 6.44 86.40 0.56 1.51 16 16 N -0.71 -10.14 5.28 -462.84 -2.44 -12.59 16 17 C 0.53 11.58 6.43 88.05 0.57 12.14 16 18 O -0.59 -17.69 17.92 -3.04 -0.05 -17.74 16 19 C -0.13 -2.90 5.02 30.15 0.15 -2.75 16 20 C 0.16 3.89 0.91 3.92 0.00 3.90 16 21 C -0.21 -6.14 6.67 31.00 0.21 -5.94 16 22 C -0.13 -3.60 7.72 31.18 0.24 -3.36 16 23 C -0.13 -3.21 6.51 30.98 0.20 -3.01 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 26 H -0.02 -0.89 8.10 -2.38 -0.02 -0.91 16 27 H 0.11 3.17 8.07 -2.39 -0.02 3.16 16 28 H 0.10 3.09 7.41 -2.39 -0.02 3.07 16 29 H 0.08 1.18 7.61 -2.38 -0.02 1.16 16 30 H 0.13 1.56 5.69 -2.39 -0.01 1.55 16 31 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.99 7.01 -2.39 -0.02 0.97 16 33 H 0.41 4.56 8.91 -92.71 -0.83 3.74 16 34 H 0.10 2.04 7.14 -2.39 -0.02 2.03 16 35 H 0.11 2.34 7.79 -2.39 -0.02 2.32 16 36 H 0.08 2.12 7.85 -2.38 -0.02 2.11 16 37 H 0.15 5.51 3.92 -112.73 -0.44 5.07 16 38 H 0.06 1.81 7.98 -2.39 -0.02 1.79 16 39 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 1.60 7.63 -2.39 -0.02 1.58 16 41 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 Total: -1.00 -75.63 321.03 1.59 -74.04 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.21 Total: 16.41 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.04 Total: -7.65 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.18 Total: -86.11 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.09 Total: -41.07 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -75.63 1.59 -74.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874920409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.890 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds