Wall clock time and date at job start Tue Mar 31 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48504 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00083 * 3 2 1 6 6 H 1.48499 * 109.47088 * 59.99939 * 3 2 1 7 7 C 1.37875 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99906 * 180.02562 * 12 11 10 14 14 O 1.21352 * 120.00306 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00119 * 179.97438 * 13 12 11 16 16 O 1.21358 * 119.99729 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00119 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99906 * 180.02562 * 17 15 13 19 19 H 1.09004 * 115.58204 * 9.22237 * 18 17 15 20 20 C 1.53123 * 117.51260 * 223.46065 * 18 17 15 21 21 C 1.52456 * 117.51678 * 154.99765 * 18 17 15 22 22 C 1.53256 * 128.58043 * 349.84694 * 21 18 17 23 23 C 1.53885 * 86.88422 * 245.05361 * 22 21 18 24 24 C 1.53257 * 128.58662 * 225.05171 * 21 18 17 25 25 H 0.97003 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47364 * 59.99542 * 9 7 2 27 27 H 1.08998 * 109.46625 * 299.99553 * 9 7 2 28 28 H 1.09001 * 109.46906 * 60.00235 * 10 9 7 29 29 H 1.08995 * 109.47655 * 299.99835 * 10 9 7 30 30 H 1.08999 * 109.46927 * 59.99618 * 11 10 9 31 31 H 1.09007 * 109.46894 * 300.00067 * 11 10 9 32 32 H 0.97002 * 119.99969 * 359.97438 * 12 11 10 33 33 H 0.97002 * 120.00124 * 359.97438 * 17 15 13 34 34 H 1.09006 * 117.51062 * 145.10012 * 20 18 17 35 35 H 1.09003 * 117.51464 * 359.97438 * 20 18 17 36 36 H 1.09000 * 113.64839 * 359.55355 * 22 21 18 37 37 H 1.09005 * 113.64881 * 130.55897 * 22 21 18 38 38 H 1.08998 * 113.58952 * 89.60541 * 23 22 21 39 39 H 1.09000 * 113.58871 * 220.42991 * 23 22 21 40 40 H 1.09006 * 113.64352 * 229.43635 * 24 21 18 41 41 H 1.08996 * 113.64800 * 0.35066 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7900 -7.5931 0.0020 15 6 2.9542 -8.5072 0.0020 16 8 4.1473 -8.2855 0.0014 17 7 2.5049 -9.7779 0.0015 18 6 3.4569 -10.8914 0.0022 19 1 4.5003 -10.6185 0.1605 20 6 3.1680 -12.0696 -0.9323 21 6 2.9829 -12.2231 0.5732 22 6 1.6982 -12.5259 1.3522 23 6 2.6033 -12.8535 2.5528 24 6 3.7146 -13.1655 1.5351 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8533 -5.0451 -0.8885 31 1 0.8539 -5.0446 0.8915 32 1 3.3860 -5.9234 0.0014 33 1 1.5513 -9.9552 0.0016 34 1 4.0214 -12.5715 -1.3884 35 1 2.2695 -12.0161 -1.5470 36 1 1.0650 -11.6524 1.5075 37 1 1.1485 -13.3867 0.9713 38 1 2.8194 -11.9917 3.1841 39 1 2.2756 -13.7239 3.1213 40 1 3.7262 -14.2043 1.2051 41 1 4.6985 -12.8055 1.8358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875178900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:23 Heat of formation + Delta-G solvation = -39.128391 kcal Electronic energy + Delta-G solvation = -20747.363847 eV Core-core repulsion = 17435.311382 eV Total energy + Delta-G solvation = -3312.052465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84691 -39.78966 -38.34612 -35.83957 -35.12009 -33.37161 -32.28905 -31.26248 -27.32299 -26.15145 -25.13650 -23.27735 -22.95592 -21.82418 -20.79877 -20.28045 -19.11182 -18.08766 -17.08424 -16.38935 -16.06652 -15.95722 -15.64259 -15.50575 -14.84424 -14.74788 -14.44403 -13.95061 -13.60920 -13.27282 -12.85449 -12.53172 -12.32900 -12.06325 -11.98137 -11.90103 -11.81323 -11.70896 -11.09121 -10.93780 -10.77611 -10.70186 -10.58836 -10.17733 -9.91890 -9.81261 -9.39889 -9.17195 -9.12970 -9.00267 -8.39175 -6.03700 -4.06634 1.34151 2.20561 3.06162 3.29630 3.37232 3.41016 3.44360 3.52536 4.04690 4.17034 4.31123 4.41396 4.41598 4.44840 4.48609 4.95608 5.19282 5.29295 5.31439 5.32400 5.36656 5.46008 5.52096 5.57483 5.61440 5.67514 5.86468 5.94449 6.01931 6.06419 6.24052 6.52645 6.67160 6.87897 6.93885 7.36393 7.60894 7.67407 7.72194 7.94705 8.01101 8.35947 9.00118 9.57845 11.07616 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.002316 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.446830 B =12085.576815 C =12255.002939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.690 5.690 13 C 0.501 3.499 14 O -0.526 6.526 15 C 0.514 3.486 16 O -0.518 6.518 17 N -0.675 5.675 18 C 0.108 3.892 19 H 0.142 0.858 20 C -0.173 4.173 21 C -0.169 4.169 22 C -0.102 4.102 23 C -0.137 4.137 24 C -0.097 4.097 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -27.421 1.438 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.403 6.403 15 C 0.295 3.705 16 O -0.393 6.393 17 N -0.327 5.327 18 C 0.002 3.998 19 H 0.160 0.840 20 C -0.211 4.211 21 C -0.170 4.170 22 C -0.140 4.140 23 C -0.174 4.174 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.251 0.749 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.695 -27.237 1.442 27.863 hybrid contribution 0.360 0.947 -0.090 1.017 sum 6.055 -26.290 1.352 27.012 Atomic orbital electron populations 1.69975 1.06058 1.26613 1.50662 1.25034 0.94874 0.99359 0.95253 0.86514 0.80080 0.83676 0.77594 1.19723 1.21002 1.20992 1.21237 0.93094 0.90860 1.50814 0.92507 1.19039 0.93806 0.90803 0.97729 1.21930 0.99882 0.92917 1.01342 1.21864 0.91730 0.84686 1.02580 1.46069 1.12281 1.04933 1.70874 1.19929 0.88372 0.84475 0.79152 1.90765 1.15951 1.84680 1.48887 1.20361 0.88854 0.84184 0.77097 1.90758 1.16250 1.84663 1.47607 1.45070 1.10856 1.04068 1.72670 1.21570 0.94702 0.80533 1.02957 0.84031 1.23427 1.04104 1.01146 0.92413 1.22861 1.00084 0.99117 0.94947 1.22445 0.94585 1.01665 0.95275 1.22744 0.96764 1.01823 0.96111 1.22456 0.98039 0.98353 0.94592 0.92969 0.96187 0.96177 0.92408 0.92397 0.91036 0.91044 0.75262 0.74906 0.87559 0.88054 0.91199 0.89400 0.89962 0.91119 0.89422 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 12 N -0.69 -10.30 5.55 -60.73 -0.34 -10.64 16 13 C 0.50 7.47 7.89 -11.59 -0.09 7.38 16 14 O -0.53 -8.88 16.48 5.49 0.09 -8.78 16 15 C 0.51 6.78 7.89 -11.59 -0.09 6.69 16 16 O -0.52 -7.72 16.05 5.49 0.09 -7.64 16 17 N -0.68 -7.06 5.54 -54.44 -0.30 -7.36 16 18 C 0.11 0.96 6.43 -68.14 -0.44 0.52 16 19 H 0.14 1.36 7.40 -51.93 -0.38 0.98 16 20 C -0.17 -1.18 10.46 -26.94 -0.28 -1.47 16 21 C -0.17 -1.19 3.01 -154.80 -0.47 -1.65 16 22 C -0.10 -0.67 8.08 -26.14 -0.21 -0.88 16 23 C -0.14 -0.85 8.08 -25.81 -0.21 -1.06 16 24 C -0.10 -0.58 8.10 -26.14 -0.21 -0.79 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 32 H 0.41 5.60 7.94 -40.82 -0.32 5.28 16 33 H 0.41 3.98 8.00 -40.82 -0.33 3.65 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -31.49 351.26 -8.64 -40.14 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.48 Total: 3.18 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.71 Total: -4.73 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.10 Total: -43.93 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.49 -8.64 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875178900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.011 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds