Wall clock time and date at job start Tue Mar 31 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48504 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00083 * 3 2 1 6 6 H 1.48499 * 109.47088 * 59.99939 * 3 2 1 7 7 C 1.37875 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99906 * 180.02562 * 12 11 10 14 14 O 1.21352 * 120.00306 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00119 * 179.97438 * 13 12 11 16 16 O 1.21358 * 119.99729 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00119 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99906 * 180.02562 * 17 15 13 19 19 H 1.09004 * 115.58204 * 9.22237 * 18 17 15 20 20 C 1.53123 * 117.51260 * 223.46065 * 18 17 15 21 21 C 1.52456 * 117.51678 * 154.99765 * 18 17 15 22 22 C 1.53256 * 128.58043 * 349.84694 * 21 18 17 23 23 C 1.53885 * 86.88422 * 245.05361 * 22 21 18 24 24 C 1.53257 * 128.58662 * 225.05171 * 21 18 17 25 25 H 0.97003 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47364 * 59.99542 * 9 7 2 27 27 H 1.08998 * 109.46625 * 299.99553 * 9 7 2 28 28 H 1.09001 * 109.46906 * 60.00235 * 10 9 7 29 29 H 1.08995 * 109.47655 * 299.99835 * 10 9 7 30 30 H 1.08999 * 109.46927 * 59.99618 * 11 10 9 31 31 H 1.09007 * 109.46894 * 300.00067 * 11 10 9 32 32 H 0.97002 * 119.99969 * 359.97438 * 12 11 10 33 33 H 0.97002 * 120.00124 * 359.97438 * 17 15 13 34 34 H 1.09006 * 117.51062 * 145.10012 * 20 18 17 35 35 H 1.09003 * 117.51464 * 359.97438 * 20 18 17 36 36 H 1.09000 * 113.64839 * 359.55355 * 22 21 18 37 37 H 1.09005 * 113.64881 * 130.55897 * 22 21 18 38 38 H 1.08998 * 113.58952 * 89.60541 * 23 22 21 39 39 H 1.09000 * 113.58871 * 220.42991 * 23 22 21 40 40 H 1.09006 * 113.64352 * 229.43635 * 24 21 18 41 41 H 1.08996 * 113.64800 * 0.35066 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7900 -7.5931 0.0020 15 6 2.9542 -8.5072 0.0020 16 8 4.1473 -8.2855 0.0014 17 7 2.5049 -9.7779 0.0015 18 6 3.4569 -10.8914 0.0022 19 1 4.5003 -10.6185 0.1605 20 6 3.1680 -12.0696 -0.9323 21 6 2.9829 -12.2231 0.5732 22 6 1.6982 -12.5259 1.3522 23 6 2.6033 -12.8535 2.5528 24 6 3.7146 -13.1655 1.5351 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8533 -5.0451 -0.8885 31 1 0.8539 -5.0446 0.8915 32 1 3.3860 -5.9234 0.0014 33 1 1.5513 -9.9552 0.0016 34 1 4.0214 -12.5715 -1.3884 35 1 2.2695 -12.0161 -1.5470 36 1 1.0650 -11.6524 1.5075 37 1 1.1485 -13.3867 0.9713 38 1 2.8194 -11.9917 3.1841 39 1 2.2756 -13.7239 3.1213 40 1 3.7262 -14.2043 1.2051 41 1 4.6985 -12.8055 1.8358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875178900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:22 Heat of formation + Delta-G solvation = -60.056885 kcal Electronic energy + Delta-G solvation = -20748.271375 eV Core-core repulsion = 17435.311382 eV Total energy + Delta-G solvation = -3312.959993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86469 -40.57405 -39.41905 -37.22465 -36.04219 -35.20153 -33.13506 -32.99524 -29.03060 -26.71683 -26.45132 -24.62689 -23.67775 -22.71303 -22.38123 -21.45509 -20.01006 -19.00336 -18.47906 -18.08025 -17.21396 -16.96162 -16.59525 -16.36992 -16.16795 -16.07537 -15.69337 -15.13102 -14.93561 -14.30134 -13.95703 -13.77932 -13.54689 -13.31031 -13.20425 -12.88473 -12.79033 -12.66953 -12.55857 -12.47863 -12.37862 -11.71352 -11.68333 -11.57492 -11.23211 -11.20648 -10.85902 -10.62879 -10.55906 -10.33902 -9.92590 -8.20061 -6.30821 0.21892 1.16396 1.41502 1.42070 1.55080 1.99447 2.40419 2.49725 2.78310 3.13951 3.29941 3.47589 3.59173 3.76001 3.91469 3.93180 4.06797 4.17122 4.44751 4.49762 4.51553 4.83346 4.84167 4.85000 4.86078 4.86987 4.90608 5.06219 5.10780 5.14070 5.19120 5.23411 5.35825 5.47631 5.51358 5.70177 5.83985 5.84136 6.21889 6.26989 6.63475 6.84474 6.86422 7.38590 8.92062 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.002316 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.446830 B =12085.576815 C =12255.002939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.685 5.685 13 C 0.503 3.497 14 O -0.547 6.547 15 C 0.519 3.481 16 O -0.538 6.538 17 N -0.661 5.661 18 C 0.081 3.919 19 H 0.133 0.867 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.093 4.093 25 H 0.263 0.737 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.420 0.580 33 H 0.419 0.581 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -28.753 1.327 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.337 5.337 13 C 0.283 3.717 14 O -0.425 6.425 15 C 0.300 3.700 16 O -0.415 6.415 17 N -0.311 5.311 18 C -0.024 4.024 19 H 0.150 0.850 20 C -0.196 4.196 21 C -0.165 4.165 22 C -0.141 4.141 23 C -0.177 4.177 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.257 0.743 33 H 0.256 0.744 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.998 -28.613 1.332 29.487 hybrid contribution -0.083 1.275 -0.045 1.279 sum 6.915 -27.338 1.287 28.228 Atomic orbital electron populations 1.70105 1.07800 1.27726 1.51738 1.25992 0.95773 1.03441 0.94839 0.85385 0.79135 0.78779 0.77655 1.18448 1.20543 1.20525 1.21704 0.93709 0.92106 1.50346 0.91774 1.18940 0.94356 0.92590 0.95453 1.21642 0.98635 0.91847 1.02258 1.21501 0.91575 0.84468 1.02073 1.45876 1.12330 1.04584 1.70887 1.20233 0.88399 0.84758 0.78262 1.90754 1.16972 1.85021 1.49792 1.19940 0.88045 0.84482 0.77563 1.90753 1.16636 1.84895 1.49210 1.45041 1.11472 1.03620 1.70995 1.21733 0.93996 0.80667 1.05975 0.84976 1.23500 1.04745 0.98931 0.92381 1.22931 1.00714 0.97468 0.95385 1.22522 0.94369 1.01868 0.95371 1.22752 0.96884 1.01908 0.96121 1.22511 0.97745 0.98901 0.93870 0.92786 0.98502 0.98502 0.91442 0.91415 0.91626 0.91659 0.74285 0.74379 0.86108 0.87590 0.92143 0.87955 0.91134 0.89874 0.87749 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.13 9.11 25.60 0.23 -29.89 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.11 -4.07 5.27 30.60 0.16 -3.90 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 N -0.68 -20.05 5.55 -464.40 -2.58 -22.63 16 13 C 0.50 14.79 7.89 87.27 0.69 15.47 16 14 O -0.55 -18.36 16.48 -3.25 -0.05 -18.41 16 15 C 0.52 13.43 7.89 87.27 0.69 14.11 16 16 O -0.54 -15.77 16.05 -3.27 -0.05 -15.82 16 17 N -0.66 -13.34 5.54 -444.52 -2.46 -15.80 16 18 C 0.08 1.35 6.43 44.85 0.29 1.64 16 19 H 0.13 2.47 7.40 -2.38 -0.02 2.46 16 20 C -0.16 -1.83 10.46 30.46 0.32 -1.51 16 21 C -0.16 -2.01 3.01 -52.37 -0.16 -2.17 16 22 C -0.10 -1.18 8.08 30.98 0.25 -0.93 16 23 C -0.14 -1.50 8.08 31.19 0.25 -1.25 16 24 C -0.09 -0.91 8.10 30.98 0.25 -0.66 16 25 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.42 11.02 7.94 -92.71 -0.74 10.28 16 33 H 0.42 7.73 8.00 -92.71 -0.74 6.98 16 34 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.80 7.84 -2.39 -0.02 0.78 16 37 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.17 351.26 0.80 -66.37 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.44 Total: 19.18 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.07 Total: -2.58 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -4.76 Total: -94.70 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.11 Total: -34.23 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.17 0.80 -66.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875178900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.318 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds