Wall clock time and date at job start Tue Mar 31 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48500 * 109.47506 * 269.99911 * 3 2 1 5 5 H 1.48498 * 109.47490 * 30.00408 * 3 2 1 6 6 H 1.48505 * 109.47008 * 150.00111 * 3 2 1 7 7 C 1.37872 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00393 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88401 * 62.42524 * 9 7 2 11 11 C 1.55158 * 111.03845 * 186.33008 * 9 7 2 12 12 C 1.54335 * 103.01830 * 153.39858 * 11 9 7 13 13 N 1.47023 * 107.26813 * 338.13730 * 12 11 9 14 14 C 1.34781 * 125.65133 * 178.85131 * 13 12 11 15 15 O 1.21581 * 119.99792 * 179.69538 * 14 13 12 16 16 N 1.34776 * 119.99791 * 359.69431 * 14 13 12 17 17 C 1.46493 * 119.99724 * 180.02562 * 16 14 13 18 18 H 1.08999 * 115.58039 * 350.61850 * 17 16 14 19 19 C 1.53126 * 117.51393 * 136.39315 * 17 16 14 20 20 C 1.52456 * 59.85556 * 107.44580 * 19 17 16 21 21 C 1.53265 * 128.58080 * 117.60301 * 20 19 17 22 22 C 1.53892 * 86.88097 * 114.94463 * 21 20 19 23 23 C 1.53253 * 128.58454 * 242.39468 * 20 19 17 24 24 C 1.47427 * 108.70168 * 358.59232 * 13 12 11 25 25 H 0.96995 * 120.00246 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00411 * 297.57165 * 10 9 7 27 27 H 1.09000 * 110.72017 * 271.95193 * 11 9 7 28 28 H 1.08994 * 110.72003 * 35.05207 * 11 9 7 29 29 H 1.09000 * 109.99150 * 218.66737 * 12 11 9 30 30 H 1.09002 * 109.78556 * 97.49292 * 12 11 9 31 31 H 0.96993 * 119.99897 * 0.02562 * 16 14 13 32 32 H 1.09000 * 117.50935 * 214.89498 * 19 17 16 33 33 H 1.08997 * 117.50807 * 359.95442 * 19 17 16 34 34 H 1.09006 * 113.64249 * 229.43901 * 21 20 19 35 35 H 1.08991 * 113.64586 * 0.44246 * 21 20 19 36 36 H 1.09006 * 113.58602 * 270.39091 * 22 21 20 37 37 H 1.09001 * 113.58985 * 139.57696 * 22 21 20 38 38 H 1.08999 * 113.64709 * 359.56020 * 23 20 19 39 39 H 1.09003 * 113.64792 * 130.56086 * 23 20 19 40 40 H 1.09000 * 110.37311 * 143.19469 * 24 13 12 41 41 H 1.09002 * 110.36457 * 265.40779 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1837 11 6 2.2193 -3.7011 0.1585 12 6 1.3293 -4.7805 0.8104 13 7 0.2066 -4.0872 1.4588 14 6 -0.8063 -4.6807 2.1209 15 8 -1.6821 -4.0045 2.6247 16 7 -0.8482 -6.0238 2.2244 17 6 -1.9494 -6.6690 2.9436 18 1 -2.6050 -5.9988 3.4996 19 6 -2.5822 -7.9080 2.3041 20 6 -1.6915 -8.0511 3.5331 21 6 -2.0591 -8.5811 4.9234 22 6 -1.0857 -9.7404 4.6466 23 6 -0.3612 -8.8000 3.6674 24 6 0.3754 -2.6348 1.2701 25 1 -0.4850 0.8400 0.0004 26 1 -0.2253 -1.9558 -1.2758 27 1 2.5837 -4.0340 -0.8134 28 1 3.0515 -3.4420 0.8129 29 1 1.9011 -5.3357 1.5539 30 1 0.9533 -5.4600 0.0455 31 1 -0.1493 -6.5632 1.8228 32 1 -3.6541 -8.0526 2.4394 33 1 -2.1795 -8.2423 1.3480 34 1 -1.7423 -7.9292 5.7376 35 1 -3.0992 -8.8949 5.0107 36 1 -1.5543 -10.5973 4.1624 37 1 -0.4825 -10.0194 5.5106 38 1 -0.0402 -9.2893 2.7478 39 1 0.4282 -8.2091 4.1319 40 1 -0.5922 -2.1570 1.1168 41 1 0.8819 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876421566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:28 Heat of formation + Delta-G solvation = -27.580427 kcal Electronic energy + Delta-G solvation = -22353.612866 eV Core-core repulsion = 19042.061158 eV Total energy + Delta-G solvation = -3311.551708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08316 -39.09005 -37.25757 -34.66974 -34.21056 -32.21298 -31.71159 -29.81109 -27.72681 -25.88639 -25.09618 -23.19948 -22.91146 -21.55589 -19.65421 -19.55418 -18.52635 -17.51734 -17.01431 -16.16019 -15.42246 -15.22272 -15.06459 -15.05726 -14.36251 -14.20840 -13.50764 -13.08906 -12.86465 -12.69866 -12.52598 -12.35946 -12.06712 -11.71294 -11.65862 -11.58415 -11.40675 -11.02982 -10.84028 -10.63484 -10.59501 -10.46571 -10.45173 -10.17776 -9.93792 -9.61106 -9.35214 -8.68542 -8.49409 -8.32354 -7.66921 -6.25763 -4.35766 3.02801 3.22565 3.29869 3.32087 3.49237 3.92702 4.24602 4.32084 4.46323 4.55899 4.63590 4.75881 4.81579 5.01237 5.21153 5.41238 5.51079 5.56625 5.58365 5.64846 5.67063 5.69728 5.73865 5.85039 5.91638 6.02251 6.13071 6.17006 6.19435 6.51764 6.71582 6.81931 6.89772 6.98603 7.24976 7.34366 7.66387 7.76115 8.05092 8.53822 8.68560 9.13974 9.31769 9.40023 10.81258 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.003700 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.572154 B = 7566.502255 C = 7765.197674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.719 3.281 15 O -0.595 6.595 16 N -0.720 5.720 17 C 0.126 3.874 18 H 0.136 0.864 19 C -0.166 4.166 20 C -0.176 4.176 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.100 4.100 24 C 0.114 3.886 25 H 0.270 0.730 26 H 0.381 0.619 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.394 0.606 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -16.521 5.878 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.421 3.579 15 O -0.474 6.474 16 N -0.373 5.373 17 C 0.019 3.981 18 H 0.154 0.846 19 C -0.205 4.205 20 C -0.177 4.177 21 C -0.135 4.135 22 C -0.173 4.173 23 C -0.137 4.137 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.223 -16.387 6.189 17.559 hybrid contribution 0.384 1.042 -0.138 1.119 sum -0.839 -15.345 6.051 16.516 Atomic orbital electron populations 1.69721 1.05973 1.27902 1.49387 1.25082 0.95037 0.99748 0.93363 0.86407 0.79764 0.82478 0.78265 1.20419 1.21014 1.19715 1.21449 0.93618 0.90052 1.52551 0.91547 1.19634 0.86643 0.91533 0.81430 1.86100 1.51509 1.57179 1.44338 1.22585 0.97535 0.95181 1.00060 1.21930 0.88325 0.96095 0.95501 1.47940 1.23194 1.09818 1.55466 1.15462 0.81840 0.81170 0.79392 1.90875 1.39680 1.63147 1.53715 1.44437 1.27658 1.05299 1.59879 1.21257 0.91698 0.87624 0.97554 0.84621 1.23389 0.98800 1.02620 0.95647 1.22864 0.98919 1.00195 0.95763 1.22438 0.99555 0.96906 0.94559 1.22727 0.98445 0.96759 0.99363 1.22395 0.94822 0.96924 0.99608 1.23139 1.02571 0.75538 0.99511 0.91993 0.76909 0.90791 0.90419 0.93172 0.92717 0.77254 0.88015 0.88481 0.89675 0.91352 0.90207 0.91434 0.91535 0.89689 0.89630 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 10.69 55.43 0.59 -23.34 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.99 8.27 -34.44 -0.28 -14.28 16 8 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 9 C 0.25 6.00 0.87 -89.62 -0.08 5.93 16 10 O -0.58 -14.87 13.16 -35.23 -0.46 -15.33 16 11 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 12 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 13 N -0.63 -13.19 3.33 -176.23 -0.59 -13.78 16 14 C 0.72 14.98 8.49 -86.91 -0.74 14.24 16 15 O -0.60 -14.70 16.17 5.29 0.09 -14.61 16 16 N -0.72 -11.32 5.51 -58.89 -0.32 -11.65 16 17 C 0.13 1.74 6.43 -68.15 -0.44 1.30 16 18 H 0.14 2.11 7.40 -51.93 -0.38 1.73 16 19 C -0.17 -1.80 10.46 -26.94 -0.28 -2.08 16 20 C -0.18 -1.85 3.01 -154.80 -0.47 -2.32 16 21 C -0.10 -0.88 8.10 -26.13 -0.21 -1.09 16 22 C -0.14 -1.08 8.08 -25.81 -0.21 -1.29 16 23 C -0.10 -0.92 8.08 -26.14 -0.21 -1.13 16 24 C 0.11 2.79 5.38 -2.53 -0.01 2.77 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.38 10.02 7.56 45.56 0.34 10.36 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 5.30 7.81 -40.82 -0.32 4.99 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 2.36 7.33 -51.93 -0.38 1.98 16 41 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -29.83 336.28 -9.61 -39.44 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.77 Total: 15.62 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -3.20 Total: 3.22 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.32 Total: -48.76 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.38 Total: -29.95 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.83 -9.61 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.863 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds