Wall clock time and date at job start Tue Mar 31 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48500 * 109.47506 * 269.99911 * 3 2 1 5 5 H 1.48498 * 109.47490 * 30.00408 * 3 2 1 6 6 H 1.48505 * 109.47008 * 150.00111 * 3 2 1 7 7 C 1.37872 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00393 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88401 * 62.42524 * 9 7 2 11 11 C 1.55158 * 111.03845 * 186.33008 * 9 7 2 12 12 C 1.54335 * 103.01830 * 153.39858 * 11 9 7 13 13 N 1.47023 * 107.26813 * 338.13730 * 12 11 9 14 14 C 1.34781 * 125.65133 * 178.85131 * 13 12 11 15 15 O 1.21581 * 119.99792 * 179.69538 * 14 13 12 16 16 N 1.34776 * 119.99791 * 359.69431 * 14 13 12 17 17 C 1.46493 * 119.99724 * 180.02562 * 16 14 13 18 18 H 1.08999 * 115.58039 * 350.61850 * 17 16 14 19 19 C 1.53126 * 117.51393 * 136.39315 * 17 16 14 20 20 C 1.52456 * 59.85556 * 107.44580 * 19 17 16 21 21 C 1.53265 * 128.58080 * 117.60301 * 20 19 17 22 22 C 1.53892 * 86.88097 * 114.94463 * 21 20 19 23 23 C 1.53253 * 128.58454 * 242.39468 * 20 19 17 24 24 C 1.47427 * 108.70168 * 358.59232 * 13 12 11 25 25 H 0.96995 * 120.00246 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00411 * 297.57165 * 10 9 7 27 27 H 1.09000 * 110.72017 * 271.95193 * 11 9 7 28 28 H 1.08994 * 110.72003 * 35.05207 * 11 9 7 29 29 H 1.09000 * 109.99150 * 218.66737 * 12 11 9 30 30 H 1.09002 * 109.78556 * 97.49292 * 12 11 9 31 31 H 0.96993 * 119.99897 * 0.02562 * 16 14 13 32 32 H 1.09000 * 117.50935 * 214.89498 * 19 17 16 33 33 H 1.08997 * 117.50807 * 359.95442 * 19 17 16 34 34 H 1.09006 * 113.64249 * 229.43901 * 21 20 19 35 35 H 1.08991 * 113.64586 * 0.44246 * 21 20 19 36 36 H 1.09006 * 113.58602 * 270.39091 * 22 21 20 37 37 H 1.09001 * 113.58985 * 139.57696 * 22 21 20 38 38 H 1.08999 * 113.64709 * 359.56020 * 23 20 19 39 39 H 1.09003 * 113.64792 * 130.56086 * 23 20 19 40 40 H 1.09000 * 110.37311 * 143.19469 * 24 13 12 41 41 H 1.09002 * 110.36457 * 265.40779 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1837 11 6 2.2193 -3.7011 0.1585 12 6 1.3293 -4.7805 0.8104 13 7 0.2066 -4.0872 1.4588 14 6 -0.8063 -4.6807 2.1209 15 8 -1.6821 -4.0045 2.6247 16 7 -0.8482 -6.0238 2.2244 17 6 -1.9494 -6.6690 2.9436 18 1 -2.6050 -5.9988 3.4996 19 6 -2.5822 -7.9080 2.3041 20 6 -1.6915 -8.0511 3.5331 21 6 -2.0591 -8.5811 4.9234 22 6 -1.0857 -9.7404 4.6466 23 6 -0.3612 -8.8000 3.6674 24 6 0.3754 -2.6348 1.2701 25 1 -0.4850 0.8400 0.0004 26 1 -0.2253 -1.9558 -1.2758 27 1 2.5837 -4.0340 -0.8134 28 1 3.0515 -3.4420 0.8129 29 1 1.9011 -5.3357 1.5539 30 1 0.9533 -5.4600 0.0455 31 1 -0.1493 -6.5632 1.8228 32 1 -3.6541 -8.0526 2.4394 33 1 -2.1795 -8.2423 1.3480 34 1 -1.7423 -7.9292 5.7376 35 1 -3.0992 -8.8949 5.0107 36 1 -1.5543 -10.5973 4.1624 37 1 -0.4825 -10.0194 5.5106 38 1 -0.0402 -9.2893 2.7478 39 1 0.4282 -8.2091 4.1319 40 1 -0.5922 -2.1570 1.1168 41 1 0.8819 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876421566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:27 Heat of formation + Delta-G solvation = -48.194293 kcal Electronic energy + Delta-G solvation = -22354.506751 eV Core-core repulsion = 19042.061158 eV Total energy + Delta-G solvation = -3312.445592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41490 -40.29161 -38.94801 -36.05126 -35.81311 -34.22918 -33.00150 -31.41308 -29.51139 -27.02328 -26.57067 -24.49106 -23.90132 -22.73872 -21.46848 -21.06976 -19.53473 -19.09595 -18.73448 -17.49719 -16.96495 -16.81091 -16.38263 -16.08430 -16.03266 -15.53931 -15.12737 -14.79464 -14.64278 -13.76649 -13.73879 -13.52620 -13.45496 -13.23587 -13.15769 -12.83701 -12.53929 -12.44387 -12.34981 -12.28406 -12.22409 -12.09328 -11.66452 -11.38594 -11.19993 -11.14508 -10.81540 -10.66050 -10.31862 -9.79451 -9.24641 -8.23922 -6.41557 1.42220 1.44497 1.54316 1.60120 2.05179 2.38760 2.86215 2.97986 3.02408 3.57968 3.73128 3.78102 3.81403 3.94685 3.98307 4.07294 4.17574 4.32678 4.52836 4.57404 4.65347 4.76207 4.84475 4.86638 4.87036 4.94903 5.06837 5.09624 5.11256 5.12995 5.28891 5.37748 5.40053 5.46499 5.52957 5.58061 5.76229 6.05188 6.17089 6.66027 7.03908 7.27607 7.35293 7.55151 8.81258 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.003700 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.572154 B = 7566.502255 C = 7765.197674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.712 3.288 15 O -0.645 6.645 16 N -0.697 5.697 17 C 0.084 3.916 18 H 0.108 0.892 19 C -0.148 4.148 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.125 4.125 23 C -0.102 4.102 24 C 0.130 3.870 25 H 0.269 0.731 26 H 0.372 0.628 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.408 0.592 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -19.092 5.983 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.414 3.586 15 O -0.528 6.528 16 N -0.351 5.351 17 C -0.023 4.023 18 H 0.126 0.874 19 C -0.186 4.186 20 C -0.162 4.162 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.139 4.139 24 C 0.006 3.994 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.240 -19.042 6.287 20.055 hybrid contribution -0.103 1.799 -0.143 1.807 sum 0.136 -17.244 6.144 18.306 Atomic orbital electron populations 1.69852 1.07241 1.28373 1.50038 1.25852 0.95734 1.02929 0.93078 0.85448 0.78716 0.78561 0.78261 1.20010 1.21269 1.18817 1.21802 0.93995 0.91186 1.52454 0.91165 1.19873 0.87176 0.93234 0.80565 1.86090 1.51404 1.56800 1.45144 1.22590 0.97154 0.93678 1.01340 1.22124 0.87148 0.95488 0.96747 1.47873 1.24437 1.08714 1.55945 1.15687 0.81195 0.82592 0.79093 1.90832 1.41511 1.64714 1.55723 1.44173 1.28373 1.03296 1.59210 1.21362 0.92251 0.88613 1.00045 0.87437 1.23438 0.99718 0.99195 0.96286 1.23047 1.00115 0.96453 0.96567 1.22540 1.00661 0.97355 0.93388 1.22703 0.97716 0.96348 0.99418 1.22479 0.93913 0.96927 1.00595 1.22657 1.00032 0.77604 0.99115 0.92217 0.77920 0.89509 0.89220 0.89240 0.90922 0.75559 0.86797 0.87466 0.90116 0.90416 0.89008 0.90307 0.90321 0.90044 0.93918 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.85 10.69 21.45 0.23 -50.62 16 2 C 0.03 1.32 5.29 84.65 0.45 1.77 16 3 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.56 -29.07 8.27 25.60 0.21 -28.86 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 9 C 0.23 11.30 0.87 -10.15 -0.01 11.29 16 10 O -0.59 -30.41 13.16 -148.98 -1.96 -32.37 16 11 C -0.11 -4.12 6.13 31.79 0.19 -3.92 16 12 C 0.11 3.48 6.15 86.73 0.53 4.01 16 13 N -0.63 -26.66 3.33 -829.72 -2.76 -29.42 16 14 C 0.71 30.15 8.49 179.05 1.52 31.67 16 15 O -0.65 -33.46 16.17 -3.97 -0.06 -33.52 16 16 N -0.70 -21.35 5.51 -458.49 -2.53 -23.88 16 17 C 0.08 2.27 6.43 44.86 0.29 2.56 16 18 H 0.11 3.52 7.40 -2.39 -0.02 3.51 16 19 C -0.15 -2.89 10.46 30.46 0.32 -2.57 16 20 C -0.16 -3.03 3.01 -52.37 -0.16 -3.19 16 21 C -0.10 -1.61 8.10 30.98 0.25 -1.36 16 22 C -0.12 -1.55 8.08 31.19 0.25 -1.30 16 23 C -0.10 -1.55 8.08 30.98 0.25 -1.30 16 24 C 0.13 6.54 5.38 86.85 0.47 7.01 16 25 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.37 20.36 7.56 -74.06 -0.56 19.80 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.09 3.12 8.03 -2.39 -0.02 3.10 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.41 10.01 7.81 -92.71 -0.72 9.29 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 2.49 7.33 -2.39 -0.02 2.48 16 41 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -67.40 336.28 -0.73 -68.13 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.24 Total: 41.77 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 4.57 Total: 15.81 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -5.06 Total: -103.93 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -2.02 Total: -65.89 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -67.40 -0.73 -68.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.938 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds