Wall clock time and date at job start Tue Mar 31 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48508 * 109.46757 * 264.83562 * 3 2 1 5 5 H 1.48498 * 109.46907 * 24.83284 * 3 2 1 6 6 H 1.48491 * 109.47314 * 144.83547 * 3 2 1 7 7 C 1.37872 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 3.40743 * 7 2 1 9 9 C 1.50705 * 120.00239 * 183.40681 * 7 2 1 10 10 O 1.42904 * 110.77776 * 61.81771 * 9 7 2 11 11 C 1.55158 * 110.71862 * 298.57828 * 9 7 2 12 12 C 1.54902 * 101.58034 * 206.13208 * 11 9 7 13 13 N 1.47754 * 104.84222 * 37.09801 * 12 11 9 14 14 C 1.34777 * 125.82051 * 155.82537 * 13 12 11 15 15 O 1.21590 * 119.99130 * 179.90564 * 14 13 12 16 16 N 1.34773 * 120.00247 * 359.91012 * 14 13 12 17 17 C 1.46496 * 119.99786 * 179.97438 * 16 14 13 18 18 H 1.09007 * 115.56264 * 9.26517 * 17 16 14 19 19 C 1.53120 * 117.51554 * 223.46206 * 17 16 14 20 20 C 1.52457 * 59.85793 * 252.55250 * 19 17 16 21 21 C 1.53260 * 128.58648 * 117.59802 * 20 19 17 22 22 C 1.53893 * 86.88352 * 114.94356 * 21 20 19 23 23 C 1.53259 * 128.58373 * 242.39779 * 20 19 17 24 24 C 1.47023 * 108.52473 * 335.74810 * 13 12 11 25 25 H 0.96999 * 120.00310 * 0.02562 * 1 2 3 26 26 H 0.96697 * 113.99579 * 61.78773 * 10 9 7 27 27 H 1.08998 * 111.00144 * 324.21099 * 11 9 7 28 28 H 1.09001 * 111.00181 * 88.05905 * 11 9 7 29 29 H 1.09001 * 110.36717 * 155.84713 * 12 11 9 30 30 H 1.08994 * 110.37045 * 278.06207 * 12 11 9 31 31 H 0.97000 * 119.99876 * 359.97438 * 16 14 13 32 32 H 1.09007 * 117.51156 * 359.97438 * 19 17 16 33 33 H 1.08999 * 117.51924 * 145.10688 * 19 17 16 34 34 H 1.08999 * 113.64625 * 229.44397 * 21 20 19 35 35 H 1.08999 * 113.64591 * 0.44831 * 21 20 19 36 36 H 1.08996 * 113.58729 * 270.39295 * 22 21 20 37 37 H 1.08999 * 113.65979 * 139.57889 * 22 21 20 38 38 H 1.08991 * 113.64694 * 359.55293 * 23 20 19 39 39 H 1.09004 * 113.64450 * 130.46781 * 23 20 19 40 40 H 1.09000 * 109.87978 * 241.68082 * 24 13 12 41 41 H 1.09002 * 109.88016 * 120.68117 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6057 1.9834 -1.3945 5 1 1.3961 2.6817 0.5880 6 1 3.4878 1.4743 0.8063 7 6 2.0046 -1.1940 0.0005 8 1 1.4660 -2.1285 -0.0546 9 6 3.5096 -1.1950 0.0781 10 8 3.9548 -0.5991 1.2983 11 6 4.1228 -0.4642 -1.1455 12 6 5.5136 -1.1388 -1.2458 13 7 5.2747 -2.5532 -0.8916 14 6 6.0389 -3.5994 -1.2631 15 8 5.7434 -4.7242 -0.9083 16 7 7.1304 -3.3987 -2.0276 17 6 7.9613 -4.5358 -2.4309 18 1 7.5502 -5.5207 -2.2093 19 6 9.4808 -4.3672 -2.3455 20 6 8.7880 -4.3878 -3.7034 21 6 8.7246 -3.2804 -4.7610 22 6 9.5365 -4.2189 -5.6711 23 6 8.9637 -5.3883 -4.8509 24 6 4.0626 -2.6288 -0.0629 25 1 -0.4850 0.8400 -0.0004 26 1 3.6622 -1.0654 2.0933 27 1 3.5344 -0.6465 -2.0447 28 1 4.2198 0.6045 -0.9540 29 1 5.8993 -1.0638 -2.2625 30 1 6.2090 -0.6809 -0.5424 31 1 7.3659 -2.5013 -2.3108 32 1 9.8620 -3.4099 -1.9895 33 1 10.0697 -5.2412 -2.0673 34 1 7.7169 -3.0815 -5.1258 35 1 9.2605 -2.3744 -4.4781 36 1 10.6151 -4.1009 -5.5680 37 1 9.2077 -4.2128 -6.7103 38 1 9.6911 -6.1721 -4.6401 39 1 8.0225 -5.7773 -5.2397 40 1 4.3101 -3.0291 0.9203 41 1 3.3221 -3.2659 -0.5465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876421567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:30 Heat of formation + Delta-G solvation = -13.834844 kcal Electronic energy + Delta-G solvation = -22340.199692 eV Core-core repulsion = 19029.244037 eV Total energy + Delta-G solvation = -3310.955655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26990 -39.31324 -37.63199 -34.84092 -34.53391 -32.44989 -31.89428 -30.01133 -28.31068 -25.96121 -25.27131 -23.27841 -22.82456 -21.84455 -20.05436 -19.61562 -18.68086 -17.85209 -17.37760 -16.34036 -15.49482 -15.41218 -15.26260 -15.01559 -14.61213 -14.44513 -13.67531 -13.34326 -12.95746 -12.86663 -12.64961 -12.56110 -12.41675 -12.18207 -11.79972 -11.74311 -11.56258 -11.38520 -11.14830 -10.77203 -10.59782 -10.53468 -10.31272 -10.12439 -10.04597 -9.77675 -9.04823 -8.76496 -8.68487 -8.51809 -8.04485 -6.23070 -4.35140 2.78085 3.26373 3.29847 3.39451 3.57407 3.75808 4.05830 4.34600 4.39437 4.44813 4.56571 4.62953 4.69799 5.05765 5.12052 5.13417 5.27030 5.45215 5.47622 5.51978 5.55602 5.57060 5.64306 5.67257 5.76044 5.78711 5.87301 6.06361 6.08872 6.12794 6.45235 6.53561 6.59015 6.63536 6.66179 7.09509 7.31090 7.48756 8.17278 8.25741 8.72350 8.86833 8.87904 9.39654 10.87393 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003932 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.698843 B = 7119.558409 C = 7416.291247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.089 3.911 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.228 1.228 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.216 3.784 10 O -0.573 6.573 11 C -0.125 4.125 12 C 0.102 3.898 13 N -0.628 5.628 14 C 0.723 3.277 15 O -0.595 6.595 16 N -0.718 5.718 17 C 0.124 3.876 18 H 0.137 0.863 19 C -0.165 4.165 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.136 4.136 23 C -0.097 4.097 24 C 0.115 3.885 25 H 0.267 0.733 26 H 0.366 0.634 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.842 -4.292 -8.245 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.116 4.116 3 Si 0.704 3.296 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.151 1.151 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.176 3.824 10 O -0.380 6.380 11 C -0.162 4.162 12 C -0.021 4.021 13 N -0.365 5.365 14 C 0.425 3.575 15 O -0.474 6.474 16 N -0.371 5.371 17 C 0.017 3.983 18 H 0.155 0.845 19 C -0.203 4.203 20 C -0.176 4.176 21 C -0.138 4.138 22 C -0.173 4.173 23 C -0.134 4.134 24 C -0.008 4.008 25 H 0.077 0.923 26 H 0.213 0.787 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.741 -4.665 -8.386 21.055 hybrid contribution 0.180 1.013 0.153 1.041 sum 18.921 -3.652 -8.233 20.956 Atomic orbital electron populations 1.69926 1.06672 1.27645 1.48019 1.24949 0.94579 0.99647 0.92472 0.87071 0.81784 0.82125 0.78661 1.20998 1.22737 1.15092 1.21192 0.88172 0.95232 1.54239 0.90274 1.19980 0.93536 0.86278 0.82600 1.86493 1.78636 1.56884 1.15966 1.23069 0.93683 0.99532 0.99959 1.22361 0.99278 0.81603 0.98824 1.47752 1.28390 1.05610 1.54700 1.15365 0.79385 0.83830 0.78928 1.90884 1.73452 1.21688 1.61376 1.44411 1.27452 1.09493 1.55719 1.21291 0.87387 0.91660 0.98002 0.84524 1.23395 0.96374 1.03564 0.97017 1.22876 1.05723 1.00152 0.88847 1.22410 1.00692 0.95943 0.94760 1.22724 0.99761 0.96581 0.98226 1.22442 1.01161 0.95812 0.94033 1.22673 0.84140 1.00420 0.93579 0.92314 0.78692 0.89323 0.90663 0.92193 0.91649 0.77030 0.88468 0.87930 0.89581 0.91509 0.90188 0.91338 0.91322 0.89591 0.92521 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.88 20.78 23.89 -169.99 -4.06 16.72 16 4 H -0.28 -6.50 7.08 56.52 0.40 -6.10 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.23 -5.26 5.50 56.52 0.31 -4.95 16 7 C -0.55 -14.59 8.81 -34.44 -0.30 -14.89 16 8 H 0.08 2.30 7.82 -52.49 -0.41 1.89 16 9 C 0.22 4.77 0.67 -89.94 -0.06 4.71 16 10 O -0.57 -12.24 10.45 -35.23 -0.37 -12.61 16 11 C -0.12 -2.47 4.81 -24.59 -0.12 -2.59 16 12 C 0.10 1.67 6.59 -2.35 -0.02 1.66 16 13 N -0.63 -11.68 3.34 -175.98 -0.59 -12.27 16 14 C 0.72 13.33 8.49 -86.92 -0.74 12.59 16 15 O -0.60 -13.05 16.24 5.29 0.09 -12.97 16 16 N -0.72 -10.04 5.51 -58.89 -0.32 -10.36 16 17 C 0.12 1.52 6.43 -68.15 -0.44 1.08 16 18 H 0.14 1.90 7.40 -51.92 -0.38 1.52 16 19 C -0.16 -1.56 10.46 -26.95 -0.28 -1.84 16 20 C -0.17 -1.66 3.01 -154.80 -0.47 -2.13 16 21 C -0.10 -0.86 8.08 -26.13 -0.21 -1.07 16 22 C -0.14 -1.00 8.08 -25.80 -0.21 -1.21 16 23 C -0.10 -0.80 8.10 -26.13 -0.21 -1.01 16 24 C 0.11 2.39 6.20 -3.07 -0.02 2.37 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.37 6.84 9.08 45.56 0.41 7.25 16 27 H 0.09 1.80 8.04 -51.93 -0.42 1.38 16 28 H 0.08 1.51 5.00 -51.93 -0.26 1.25 16 29 H 0.06 0.80 7.31 -51.93 -0.38 0.42 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.71 7.32 -40.82 -0.30 4.41 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 41 H 0.07 1.63 7.66 -51.93 -0.40 1.23 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -31.82 327.54 -8.30 -40.12 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.58 Total: 11.72 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.17 Total: 0.01 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.14 Total: -47.93 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.28 Total: -25.57 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.06 Total: 16.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.82 -8.30 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.283 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds