Wall clock time and date at job start Tue Mar 31 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48508 * 109.46757 * 264.83562 * 3 2 1 5 5 H 1.48498 * 109.46907 * 24.83284 * 3 2 1 6 6 H 1.48491 * 109.47314 * 144.83547 * 3 2 1 7 7 C 1.37872 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 3.40743 * 7 2 1 9 9 C 1.50705 * 120.00239 * 183.40681 * 7 2 1 10 10 O 1.42904 * 110.77776 * 61.81771 * 9 7 2 11 11 C 1.55158 * 110.71862 * 298.57828 * 9 7 2 12 12 C 1.54902 * 101.58034 * 206.13208 * 11 9 7 13 13 N 1.47754 * 104.84222 * 37.09801 * 12 11 9 14 14 C 1.34777 * 125.82051 * 155.82537 * 13 12 11 15 15 O 1.21590 * 119.99130 * 179.90564 * 14 13 12 16 16 N 1.34773 * 120.00247 * 359.91012 * 14 13 12 17 17 C 1.46496 * 119.99786 * 179.97438 * 16 14 13 18 18 H 1.09007 * 115.56264 * 9.26517 * 17 16 14 19 19 C 1.53120 * 117.51554 * 223.46206 * 17 16 14 20 20 C 1.52457 * 59.85793 * 252.55250 * 19 17 16 21 21 C 1.53260 * 128.58648 * 117.59802 * 20 19 17 22 22 C 1.53893 * 86.88352 * 114.94356 * 21 20 19 23 23 C 1.53259 * 128.58373 * 242.39779 * 20 19 17 24 24 C 1.47023 * 108.52473 * 335.74810 * 13 12 11 25 25 H 0.96999 * 120.00310 * 0.02562 * 1 2 3 26 26 H 0.96697 * 113.99579 * 61.78773 * 10 9 7 27 27 H 1.08998 * 111.00144 * 324.21099 * 11 9 7 28 28 H 1.09001 * 111.00181 * 88.05905 * 11 9 7 29 29 H 1.09001 * 110.36717 * 155.84713 * 12 11 9 30 30 H 1.08994 * 110.37045 * 278.06207 * 12 11 9 31 31 H 0.97000 * 119.99876 * 359.97438 * 16 14 13 32 32 H 1.09007 * 117.51156 * 359.97438 * 19 17 16 33 33 H 1.08999 * 117.51924 * 145.10688 * 19 17 16 34 34 H 1.08999 * 113.64625 * 229.44397 * 21 20 19 35 35 H 1.08999 * 113.64591 * 0.44831 * 21 20 19 36 36 H 1.08996 * 113.58729 * 270.39295 * 22 21 20 37 37 H 1.08999 * 113.65979 * 139.57889 * 22 21 20 38 38 H 1.08991 * 113.64694 * 359.55293 * 23 20 19 39 39 H 1.09004 * 113.64450 * 130.46781 * 23 20 19 40 40 H 1.09000 * 109.87978 * 241.68082 * 24 13 12 41 41 H 1.09002 * 109.88016 * 120.68117 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6057 1.9834 -1.3945 5 1 1.3961 2.6817 0.5880 6 1 3.4878 1.4743 0.8063 7 6 2.0046 -1.1940 0.0005 8 1 1.4660 -2.1285 -0.0546 9 6 3.5096 -1.1950 0.0781 10 8 3.9548 -0.5991 1.2983 11 6 4.1228 -0.4642 -1.1455 12 6 5.5136 -1.1388 -1.2458 13 7 5.2747 -2.5532 -0.8916 14 6 6.0389 -3.5994 -1.2631 15 8 5.7434 -4.7242 -0.9083 16 7 7.1304 -3.3987 -2.0276 17 6 7.9613 -4.5358 -2.4309 18 1 7.5502 -5.5207 -2.2093 19 6 9.4808 -4.3672 -2.3455 20 6 8.7880 -4.3878 -3.7034 21 6 8.7246 -3.2804 -4.7610 22 6 9.5365 -4.2189 -5.6711 23 6 8.9637 -5.3883 -4.8509 24 6 4.0626 -2.6288 -0.0629 25 1 -0.4850 0.8400 -0.0004 26 1 3.6622 -1.0654 2.0933 27 1 3.5344 -0.6465 -2.0447 28 1 4.2198 0.6045 -0.9540 29 1 5.8993 -1.0638 -2.2625 30 1 6.2090 -0.6809 -0.5424 31 1 7.3659 -2.5013 -2.3108 32 1 9.8620 -3.4099 -1.9895 33 1 10.0697 -5.2412 -2.0673 34 1 7.7169 -3.0815 -5.1258 35 1 9.2605 -2.3744 -4.4781 36 1 10.6151 -4.1009 -5.5680 37 1 9.2077 -4.2128 -6.7103 38 1 9.6911 -6.1721 -4.6401 39 1 8.0225 -5.7773 -5.2397 40 1 4.3101 -3.0291 0.9203 41 1 3.3221 -3.2659 -0.5465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876421567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:30 Heat of formation + Delta-G solvation = -37.663501 kcal Electronic energy + Delta-G solvation = -22341.232980 eV Core-core repulsion = 19029.244037 eV Total energy + Delta-G solvation = -3311.988943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50731 -40.36544 -39.15742 -36.16829 -35.85639 -34.51432 -33.04728 -31.53933 -29.96195 -27.14403 -26.57484 -24.34862 -23.90343 -22.91503 -21.60557 -21.14261 -19.77760 -19.27720 -18.84075 -17.56775 -16.88299 -16.84500 -16.61099 -16.11366 -16.08300 -15.60039 -15.14562 -15.00982 -14.77560 -14.09605 -14.04593 -13.74353 -13.43571 -13.23471 -13.18881 -13.11029 -12.84962 -12.44184 -12.38188 -12.29555 -12.16462 -11.83960 -11.67690 -11.37614 -11.15429 -10.96595 -10.81560 -10.79345 -10.36689 -9.90740 -9.35551 -8.35934 -6.52475 1.38610 1.47432 1.48827 1.69612 1.99125 2.40641 2.84938 2.87445 2.99826 3.52244 3.58123 3.72601 3.74826 3.79376 3.94859 3.97856 4.00750 4.22022 4.40944 4.51374 4.52616 4.60929 4.78273 4.85008 4.86320 4.87271 4.90824 4.96639 5.05165 5.07748 5.10845 5.12844 5.39850 5.42402 5.51004 5.52652 5.55475 6.03625 6.07077 6.58606 6.92825 7.11326 7.28994 7.48035 8.78488 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003932 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.698843 B = 7119.558409 C = 7416.291247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.036 3.964 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.309 1.309 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.033 0.967 9 C 0.219 3.781 10 O -0.571 6.571 11 C -0.128 4.128 12 C 0.110 3.890 13 N -0.631 5.631 14 C 0.718 3.282 15 O -0.639 6.639 16 N -0.697 5.697 17 C 0.086 3.914 18 H 0.111 0.889 19 C -0.144 4.144 20 C -0.163 4.163 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.102 4.102 24 C 0.123 3.877 25 H 0.269 0.731 26 H 0.377 0.623 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.604 -2.686 -9.430 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.237 1.237 6 H -0.134 1.134 7 C -0.592 4.592 8 H 0.052 0.948 9 C 0.178 3.822 10 O -0.378 6.378 11 C -0.165 4.165 12 C -0.011 4.011 13 N -0.368 5.368 14 C 0.420 3.580 15 O -0.521 6.521 16 N -0.351 5.351 17 C -0.020 4.020 18 H 0.129 0.871 19 C -0.182 4.182 20 C -0.165 4.165 21 C -0.140 4.140 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.001 4.001 25 H 0.077 0.923 26 H 0.225 0.775 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.246 0.754 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 22.564 -3.054 -9.605 24.712 hybrid contribution -1.027 0.368 0.528 1.212 sum 21.537 -2.686 -9.076 23.525 Atomic orbital electron populations 1.70069 1.08671 1.28619 1.50263 1.25819 0.95172 1.03449 0.92029 0.86066 0.80630 0.77031 0.79729 1.19030 1.23700 1.13353 1.21424 0.90918 0.93466 1.53399 0.94826 1.19775 0.90848 0.87620 0.83913 1.86435 1.78247 1.57018 1.16134 1.23015 0.95556 0.99926 0.98046 1.22463 0.97423 0.79510 1.01742 1.47676 1.27660 1.06865 1.54568 1.15541 0.80187 0.82999 0.79224 1.90852 1.74716 1.23431 1.63095 1.44201 1.25983 1.10746 1.54148 1.21384 0.88871 0.90152 1.01612 0.87077 1.23447 0.93681 1.04703 0.96393 1.23032 1.03321 1.01477 0.88667 1.22470 1.00797 0.96323 0.94410 1.22709 1.00249 0.95134 0.98304 1.22523 1.01316 0.96405 0.93707 1.22326 0.84796 0.99232 0.93780 0.92252 0.77475 0.90222 0.89948 0.88281 0.89731 0.75443 0.87268 0.86684 0.90262 0.90265 0.88985 0.90600 0.90365 0.90262 0.92581 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.96 21.44 0.30 -56.65 16 2 C 0.04 1.98 5.47 84.65 0.46 2.44 16 3 Si 0.94 42.30 23.89 68.60 1.64 43.94 16 4 H -0.26 -11.07 7.08 99.48 0.70 -10.36 16 5 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.21 -8.88 5.50 99.48 0.55 -8.33 16 7 C -0.55 -30.26 8.81 25.60 0.23 -30.03 16 8 H 0.03 2.08 7.82 -2.91 -0.02 2.06 16 9 C 0.22 9.55 0.67 -10.35 -0.01 9.54 16 10 O -0.57 -23.29 10.45 -148.98 -1.56 -24.85 16 11 C -0.13 -4.76 4.81 31.98 0.15 -4.61 16 12 C 0.11 3.23 6.59 86.79 0.57 3.80 16 13 N -0.63 -22.70 3.34 -828.93 -2.77 -25.47 16 14 C 0.72 26.02 8.49 179.06 1.52 27.54 16 15 O -0.64 -28.62 16.24 -4.00 -0.06 -28.69 16 16 N -0.70 -18.17 5.51 -458.48 -2.53 -20.69 16 17 C 0.09 2.00 6.43 44.85 0.29 2.29 16 18 H 0.11 3.16 7.40 -2.38 -0.02 3.14 16 19 C -0.14 -2.30 10.46 30.45 0.32 -1.98 16 20 C -0.16 -2.69 3.01 -52.37 -0.16 -2.85 16 21 C -0.10 -1.42 8.08 30.98 0.25 -1.17 16 22 C -0.13 -1.46 8.08 31.20 0.25 -1.20 16 23 C -0.10 -1.45 8.10 30.98 0.25 -1.20 16 24 C 0.12 5.19 6.20 86.73 0.54 5.72 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.38 13.65 9.08 -74.06 -0.67 12.98 16 27 H 0.08 3.10 8.04 -2.39 -0.02 3.08 16 28 H 0.08 2.98 5.00 -2.39 -0.01 2.97 16 29 H 0.10 2.16 7.31 -2.39 -0.02 2.14 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.41 8.32 7.32 -92.71 -0.68 7.65 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 2.33 8.06 -2.39 -0.02 2.31 16 41 H 0.04 2.06 7.66 -2.39 -0.02 2.04 16 Total: -1.00 -71.55 327.54 -0.77 -72.32 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.46 Total: 31.80 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.67 Total: 8.28 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.99 Total: -102.81 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.62 Total: -53.54 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.64 Total: 43.94 kcal Total: -71.55 -0.77 -72.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.657 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds