Wall clock time and date at job start Tue Mar 31 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47395 * 269.99884 * 3 2 1 5 5 H 1.48505 * 109.47136 * 30.00372 * 3 2 1 6 6 H 1.48503 * 109.46969 * 150.00171 * 3 2 1 7 7 C 1.37878 * 119.99341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00384 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88480 * 62.43260 * 9 7 2 11 11 C 1.55163 * 111.03886 * 186.33449 * 9 7 2 12 12 C 1.54339 * 103.01970 * 153.39778 * 11 9 7 13 13 N 1.47023 * 107.26577 * 338.14397 * 12 11 9 14 14 C 1.34774 * 125.64690 * 178.85388 * 13 12 11 15 15 O 1.21591 * 119.99950 * 179.68978 * 14 13 12 16 16 N 1.34782 * 120.00009 * 359.68665 * 14 13 12 17 17 C 1.46498 * 119.99746 * 180.02562 * 16 14 13 18 18 H 1.09004 * 115.58223 * 9.37632 * 17 16 14 19 19 C 1.53124 * 117.51110 * 223.60658 * 17 16 14 20 20 C 1.52463 * 59.91303 * 252.57305 * 19 17 16 21 21 C 1.53253 * 128.58661 * 242.37621 * 20 19 17 22 22 C 1.53884 * 86.88536 * 194.88792 * 21 20 19 23 23 C 1.53255 * 128.58200 * 117.57682 * 20 19 17 24 24 C 1.47424 * 108.70311 * 358.58161 * 13 12 11 25 25 H 0.97003 * 119.99493 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00411 * 297.57249 * 10 9 7 27 27 H 1.08998 * 110.71983 * 271.95876 * 11 9 7 28 28 H 1.08994 * 110.71743 * 35.05205 * 11 9 7 29 29 H 1.08997 * 109.98595 * 218.66801 * 12 11 9 30 30 H 1.08998 * 109.77448 * 97.49905 * 12 11 9 31 31 H 0.96996 * 119.99730 * 0.02562 * 16 14 13 32 32 H 1.09002 * 117.51408 * 145.10403 * 19 17 16 33 33 H 1.08998 * 117.51142 * 0.04383 * 19 17 16 34 34 H 1.09000 * 113.64538 * 309.38960 * 21 20 19 35 35 H 1.09011 * 113.64293 * 80.38953 * 21 20 19 36 36 H 1.08996 * 113.59311 * 270.39425 * 22 21 20 37 37 H 1.09004 * 113.58951 * 139.57317 * 22 21 20 38 38 H 1.08999 * 113.65298 * 279.60951 * 23 20 19 39 39 H 1.08997 * 113.64902 * 50.62025 * 23 20 19 40 40 H 1.09004 * 110.36661 * 143.19683 * 24 13 12 41 41 H 1.09002 * 110.37063 * 265.40829 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2189 -3.7013 0.1586 12 6 1.3288 -4.7805 0.8105 13 7 0.2060 -4.0870 1.4586 14 6 -0.8069 -4.6805 2.1207 15 8 -1.6828 -4.0041 2.6245 16 7 -0.8489 -6.0236 2.2243 17 6 -1.9502 -6.6687 2.9435 18 1 -2.7743 -6.0141 3.2274 19 6 -1.5981 -7.8158 3.8948 20 6 -2.2898 -8.1081 2.5679 21 6 -3.6677 -8.7338 2.3258 22 6 -3.2249 -8.9393 0.8664 23 6 -1.7754 -8.9335 1.3834 24 6 0.3751 -2.6347 1.2701 25 1 -0.4849 0.8401 0.0004 26 1 -0.2253 -1.9558 -1.2760 27 1 2.5835 -4.0341 -0.8132 28 1 3.0511 -3.4422 0.8130 29 1 1.9005 -5.3358 1.5540 30 1 0.9529 -5.4600 0.0455 31 1 -0.1500 -6.5631 1.8227 32 1 -2.1905 -7.9156 4.8042 33 1 -0.5470 -8.0897 3.9858 34 1 -3.8267 -9.6650 2.8697 35 1 -4.4929 -8.0304 2.4374 36 1 -3.4596 -8.0962 0.2166 37 1 -3.5347 -9.8966 0.4472 38 1 -1.0838 -8.3903 0.7395 39 1 -1.4078 -9.9202 1.6649 40 1 -0.5925 -2.1569 1.1166 41 1 0.8815 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876421568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:33 Heat of formation + Delta-G solvation = -27.466544 kcal Electronic energy + Delta-G solvation = -22452.667659 eV Core-core repulsion = 19141.120889 eV Total energy + Delta-G solvation = -3311.546770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10141 -39.07090 -37.25520 -34.62801 -34.21987 -32.21686 -31.76381 -29.83224 -27.73632 -25.86026 -25.11953 -23.09654 -22.77401 -21.71185 -19.67094 -19.57605 -18.61764 -17.42737 -17.00093 -16.10740 -15.38904 -15.21970 -15.13070 -15.03859 -14.36087 -14.21490 -13.50152 -13.14084 -12.92994 -12.67957 -12.58647 -12.16347 -12.00990 -11.74697 -11.67192 -11.64024 -11.41845 -11.02834 -10.83280 -10.64233 -10.60224 -10.45956 -10.39821 -10.18326 -9.78736 -9.62253 -9.35745 -8.68841 -8.56462 -8.34215 -7.68498 -6.26195 -4.36148 2.99659 3.22350 3.29695 3.31931 3.47666 3.97010 4.24540 4.32641 4.42420 4.56999 4.68431 4.73187 4.89228 5.00824 5.26533 5.40441 5.53208 5.56947 5.59133 5.64123 5.69055 5.72898 5.76525 5.86986 5.94295 6.01578 6.14746 6.18830 6.23178 6.51135 6.70966 6.79210 6.89171 6.97321 7.24206 7.33641 7.64739 7.75717 8.04605 8.52133 8.68082 9.12018 9.31322 9.39585 10.80848 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.003851 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.907386 B = 7269.215976 C = 7423.417462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.719 3.281 15 O -0.595 6.595 16 N -0.720 5.720 17 C 0.142 3.858 18 H 0.137 0.863 19 C -0.182 4.182 20 C -0.175 4.175 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.100 4.100 24 C 0.114 3.886 25 H 0.270 0.730 26 H 0.381 0.619 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.394 0.606 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -16.341 3.600 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.422 3.578 15 O -0.474 6.474 16 N -0.374 5.374 17 C 0.035 3.965 18 H 0.155 0.845 19 C -0.221 4.221 20 C -0.177 4.177 21 C -0.135 4.135 22 C -0.173 4.173 23 C -0.138 4.138 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.228 0.772 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.574 -16.202 3.901 16.863 hybrid contribution 0.488 1.028 0.020 1.138 sum -2.086 -15.174 3.922 15.811 Atomic orbital electron populations 1.69725 1.05980 1.27899 1.49384 1.25081 0.95033 0.99745 0.93344 0.86407 0.79767 0.82472 0.78273 1.20409 1.21007 1.19713 1.21451 0.93624 0.90050 1.52569 0.91540 1.19632 0.86638 0.91537 0.81420 1.86098 1.51522 1.57169 1.44333 1.22587 0.97535 0.95171 1.00068 1.21934 0.88325 0.96110 0.95511 1.47937 1.23176 1.09838 1.55411 1.15454 0.81892 0.81124 0.79356 1.90880 1.39650 1.63114 1.53721 1.44461 1.27614 1.05337 1.59959 1.21212 0.91953 0.87100 0.96257 0.84499 1.23421 1.01235 1.03596 0.93851 1.22891 0.98438 0.99182 0.97190 1.22428 0.94614 1.00089 0.96366 1.22723 0.96279 1.01933 0.96392 1.22386 0.97053 0.99047 0.95297 1.23147 1.02587 0.75502 0.99536 0.91992 0.76910 0.90779 0.90408 0.93158 0.92703 0.77209 0.88119 0.88647 0.89803 0.91252 0.89947 0.91442 0.91494 0.89873 0.89619 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 10.69 55.43 0.59 -23.30 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.99 8.27 -34.44 -0.28 -14.27 16 8 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 9 C 0.25 6.00 0.87 -89.62 -0.08 5.92 16 10 O -0.58 -14.84 13.16 -35.23 -0.46 -15.30 16 11 C -0.12 -2.27 6.13 -24.89 -0.15 -2.43 16 12 C 0.10 1.83 6.15 -3.06 -0.02 1.81 16 13 N -0.63 -13.15 3.33 -176.23 -0.59 -13.74 16 14 C 0.72 14.95 8.49 -86.92 -0.74 14.21 16 15 O -0.59 -14.64 16.17 5.29 0.09 -14.55 16 16 N -0.72 -11.32 5.51 -58.82 -0.32 -11.65 16 17 C 0.14 1.96 6.44 -68.08 -0.44 1.53 16 18 H 0.14 2.13 7.40 -51.93 -0.38 1.75 16 19 C -0.18 -1.95 10.45 -26.94 -0.28 -2.23 16 20 C -0.18 -1.89 3.02 -154.73 -0.47 -2.35 16 21 C -0.10 -0.91 8.10 -26.14 -0.21 -1.12 16 22 C -0.14 -1.27 8.08 -25.81 -0.21 -1.48 16 23 C -0.10 -0.97 8.08 -26.13 -0.21 -1.18 16 24 C 0.11 2.78 5.38 -2.53 -0.01 2.76 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.38 10.00 7.56 45.56 0.34 10.34 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 5.31 7.51 -40.82 -0.31 5.00 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.36 7.33 -51.93 -0.38 1.98 16 41 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -29.71 335.69 -9.60 -39.30 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -5.74 Total: 15.91 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.20 Total: 2.94 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.32 Total: -48.68 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.38 Total: -29.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.71 -9.60 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.835 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds