Wall clock time and date at job start Tue Mar 31 2020 02:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47395 * 269.99884 * 3 2 1 5 5 H 1.48505 * 109.47136 * 30.00372 * 3 2 1 6 6 H 1.48503 * 109.46969 * 150.00171 * 3 2 1 7 7 C 1.37878 * 119.99341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00384 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88480 * 62.43260 * 9 7 2 11 11 C 1.55163 * 111.03886 * 186.33449 * 9 7 2 12 12 C 1.54339 * 103.01970 * 153.39778 * 11 9 7 13 13 N 1.47023 * 107.26577 * 338.14397 * 12 11 9 14 14 C 1.34774 * 125.64690 * 178.85388 * 13 12 11 15 15 O 1.21591 * 119.99950 * 179.68978 * 14 13 12 16 16 N 1.34782 * 120.00009 * 359.68665 * 14 13 12 17 17 C 1.46498 * 119.99746 * 180.02562 * 16 14 13 18 18 H 1.09004 * 115.58223 * 9.37632 * 17 16 14 19 19 C 1.53124 * 117.51110 * 223.60658 * 17 16 14 20 20 C 1.52463 * 59.91303 * 252.57305 * 19 17 16 21 21 C 1.53253 * 128.58661 * 242.37621 * 20 19 17 22 22 C 1.53884 * 86.88536 * 194.88792 * 21 20 19 23 23 C 1.53255 * 128.58200 * 117.57682 * 20 19 17 24 24 C 1.47424 * 108.70311 * 358.58161 * 13 12 11 25 25 H 0.97003 * 119.99493 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00411 * 297.57249 * 10 9 7 27 27 H 1.08998 * 110.71983 * 271.95876 * 11 9 7 28 28 H 1.08994 * 110.71743 * 35.05205 * 11 9 7 29 29 H 1.08997 * 109.98595 * 218.66801 * 12 11 9 30 30 H 1.08998 * 109.77448 * 97.49905 * 12 11 9 31 31 H 0.96996 * 119.99730 * 0.02562 * 16 14 13 32 32 H 1.09002 * 117.51408 * 145.10403 * 19 17 16 33 33 H 1.08998 * 117.51142 * 0.04383 * 19 17 16 34 34 H 1.09000 * 113.64538 * 309.38960 * 21 20 19 35 35 H 1.09011 * 113.64293 * 80.38953 * 21 20 19 36 36 H 1.08996 * 113.59311 * 270.39425 * 22 21 20 37 37 H 1.09004 * 113.58951 * 139.57317 * 22 21 20 38 38 H 1.08999 * 113.65298 * 279.60951 * 23 20 19 39 39 H 1.08997 * 113.64902 * 50.62025 * 23 20 19 40 40 H 1.09004 * 110.36661 * 143.19683 * 24 13 12 41 41 H 1.09002 * 110.37063 * 265.40829 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2189 -3.7013 0.1586 12 6 1.3288 -4.7805 0.8105 13 7 0.2060 -4.0870 1.4586 14 6 -0.8069 -4.6805 2.1207 15 8 -1.6828 -4.0041 2.6245 16 7 -0.8489 -6.0236 2.2243 17 6 -1.9502 -6.6687 2.9435 18 1 -2.7743 -6.0141 3.2274 19 6 -1.5981 -7.8158 3.8948 20 6 -2.2898 -8.1081 2.5679 21 6 -3.6677 -8.7338 2.3258 22 6 -3.2249 -8.9393 0.8664 23 6 -1.7754 -8.9335 1.3834 24 6 0.3751 -2.6347 1.2701 25 1 -0.4849 0.8401 0.0004 26 1 -0.2253 -1.9558 -1.2760 27 1 2.5835 -4.0341 -0.8132 28 1 3.0511 -3.4422 0.8130 29 1 1.9005 -5.3358 1.5540 30 1 0.9529 -5.4600 0.0455 31 1 -0.1500 -6.5631 1.8227 32 1 -2.1905 -7.9156 4.8042 33 1 -0.5470 -8.0897 3.9858 34 1 -3.8267 -9.6650 2.8697 35 1 -4.4929 -8.0304 2.4374 36 1 -3.4596 -8.0962 0.2166 37 1 -3.5347 -9.8966 0.4472 38 1 -1.0838 -8.3903 0.7395 39 1 -1.4078 -9.9202 1.6649 40 1 -0.5925 -2.1569 1.1166 41 1 0.8815 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876421568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:32 Heat of formation + Delta-G solvation = -47.996314 kcal Electronic energy + Delta-G solvation = -22453.557897 eV Core-core repulsion = 19141.120889 eV Total energy + Delta-G solvation = -3312.437007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43953 -40.29353 -38.94680 -36.05955 -35.78465 -34.23217 -33.05151 -31.43873 -29.51943 -27.04026 -26.57439 -24.54610 -23.68387 -22.87361 -21.48256 -21.08500 -19.70113 -19.10096 -18.64043 -17.43368 -16.97766 -16.82721 -16.38143 -16.13455 -16.02111 -15.54193 -15.10511 -14.84940 -14.64648 -13.89160 -13.72199 -13.53298 -13.33991 -13.27003 -13.08345 -12.83369 -12.59732 -12.52356 -12.43877 -12.33086 -12.23120 -12.09802 -11.59427 -11.38782 -11.19907 -11.16271 -10.67928 -10.63188 -10.31864 -9.87567 -9.28690 -8.24189 -6.41827 1.42069 1.44462 1.54235 1.57799 2.03469 2.38640 2.88364 2.96973 3.02119 3.53602 3.67907 3.78821 3.81864 3.94757 4.02003 4.06259 4.17312 4.31759 4.47953 4.56115 4.64281 4.75741 4.85295 4.87663 4.88131 4.93715 5.06348 5.06997 5.09249 5.15841 5.27908 5.37030 5.38898 5.46002 5.51400 5.55987 5.75940 6.04578 6.15775 6.65764 7.02201 7.27161 7.35019 7.53329 8.81038 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.003851 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.907386 B = 7269.215976 C = 7423.417462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.713 3.287 15 O -0.644 6.644 16 N -0.698 5.698 17 C 0.098 3.902 18 H 0.108 0.892 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.097 4.097 24 C 0.129 3.871 25 H 0.269 0.731 26 H 0.372 0.628 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -19.047 3.836 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.415 3.585 15 O -0.527 6.527 16 N -0.352 5.352 17 C -0.008 4.008 18 H 0.126 0.874 19 C -0.197 4.197 20 C -0.166 4.166 21 C -0.133 4.133 22 C -0.176 4.176 23 C -0.134 4.134 24 C 0.006 3.994 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.061 0.939 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.078 -18.991 4.129 19.464 hybrid contribution -0.021 1.822 -0.045 1.823 sum -1.099 -17.168 4.084 17.682 Atomic orbital electron populations 1.69858 1.07257 1.28372 1.50035 1.25848 0.95720 1.02916 0.93044 0.85449 0.78722 0.78559 0.78270 1.20003 1.21258 1.18810 1.21805 0.94004 0.91182 1.52485 0.91151 1.19874 0.87173 0.93245 0.80555 1.86089 1.51419 1.56792 1.45155 1.22592 0.97158 0.93663 1.01345 1.22127 0.87152 0.95500 0.96756 1.47870 1.24420 1.08738 1.55892 1.15675 0.81235 0.82542 0.79058 1.90837 1.41458 1.64680 1.55728 1.44194 1.28307 1.03341 1.59351 1.21319 0.91529 0.88241 0.99723 0.87390 1.23480 1.02251 0.99783 0.94136 1.22969 0.99883 0.96016 0.97684 1.22532 0.93446 1.00740 0.96598 1.22720 0.96398 1.02245 0.96195 1.22480 0.96936 0.99767 0.94211 1.22666 1.00045 0.77566 0.99150 0.92215 0.77926 0.89517 0.89179 0.89176 0.90989 0.75534 0.86793 0.87328 0.87359 0.92136 0.91887 0.89430 0.92151 0.87428 0.93921 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.85 10.69 21.45 0.23 -50.63 16 2 C 0.03 1.35 5.29 84.65 0.45 1.80 16 3 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -29.08 8.27 25.60 0.21 -28.87 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 9 C 0.23 11.30 0.87 -10.15 -0.01 11.29 16 10 O -0.59 -30.46 13.16 -148.98 -1.96 -32.42 16 11 C -0.11 -4.12 6.13 31.79 0.19 -3.92 16 12 C 0.11 3.47 6.15 86.73 0.53 4.01 16 13 N -0.63 -26.64 3.33 -829.72 -2.76 -29.40 16 14 C 0.71 30.16 8.49 179.05 1.52 31.68 16 15 O -0.64 -33.37 16.17 -4.00 -0.06 -33.44 16 16 N -0.70 -21.42 5.51 -458.25 -2.53 -23.95 16 17 C 0.10 2.67 6.44 44.90 0.29 2.96 16 18 H 0.11 3.55 7.40 -2.39 -0.02 3.54 16 19 C -0.16 -2.97 10.45 30.46 0.32 -2.66 16 20 C -0.16 -3.16 3.02 -52.33 -0.16 -3.32 16 21 C -0.10 -1.56 8.10 30.98 0.25 -1.31 16 22 C -0.14 -2.27 8.08 31.19 0.25 -2.02 16 23 C -0.10 -1.55 8.08 30.98 0.25 -1.30 16 24 C 0.13 6.53 5.38 86.86 0.47 7.00 16 25 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.41 10.05 7.51 -92.71 -0.70 9.35 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.07 7.84 -2.39 -0.02 1.05 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 2.49 7.33 -2.38 -0.02 2.47 16 41 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -67.47 335.69 -0.70 -68.17 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -0.22 Total: 42.25 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 4.57 Total: 15.34 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -5.06 Total: -103.97 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -2.03 Total: -65.85 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -67.47 -0.70 -68.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876421568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds