Wall clock time and date at job start Tue Mar 31 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35966 * 116.99827 * 2 1 4 4 C 1.38637 * 120.44255 * 0.02562 * 3 2 1 5 5 N 1.31894 * 120.71222 * 180.02562 * 4 3 2 6 6 C 1.32020 * 121.74976 * 359.97438 * 5 4 3 7 7 F 1.35093 * 119.59190 * 179.97438 * 6 5 4 8 8 C 1.38519 * 120.82026 * 0.02562 * 6 5 4 9 9 C 1.50694 * 120.39989 * 180.02562 * 8 6 5 10 10 N 1.46904 * 109.46992 * 284.97238 * 9 8 6 11 11 C 1.46898 * 110.99816 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47279 * 185.35337 * 11 10 9 13 13 C 1.50702 * 115.54817 * 65.04835 * 12 11 10 14 14 H 1.08006 * 119.99651 * 265.44533 * 13 12 11 15 15 C 1.37874 * 119.99977 * 85.44749 * 13 12 11 16 16 N 1.31506 * 120.00203 * 353.59566 * 15 13 12 17 17 Si 1.86807 * 119.99646 * 173.59344 * 15 13 12 18 18 H 1.48500 * 109.47269 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46962 * 119.99997 * 17 15 13 20 20 H 1.48493 * 109.47208 * 239.99995 * 17 15 13 21 21 C 1.52993 * 117.49536 * 279.38121 * 12 11 10 22 22 C 1.52996 * 117.49748 * 210.72029 * 12 11 10 23 23 C 1.38495 * 119.19308 * 359.97438 * 8 6 5 24 24 H 1.09004 * 109.47067 * 299.99784 * 1 2 3 25 25 H 1.09003 * 109.46980 * 59.99641 * 1 2 3 26 26 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.64230 * 359.74249 * 4 3 2 28 28 H 1.08994 * 109.47218 * 44.97460 * 9 8 6 29 29 H 1.09004 * 109.46840 * 164.97470 * 9 8 6 30 30 H 1.00896 * 111.00194 * 303.95634 * 10 9 8 31 31 H 1.09000 * 109.47194 * 305.35017 * 11 10 9 32 32 H 1.08993 * 109.47620 * 65.34989 * 11 10 9 33 33 H 0.97005 * 120.00313 * 179.97438 * 16 15 13 34 34 H 1.09003 * 117.50168 * 359.97438 * 21 12 11 35 35 H 1.09001 * 117.49816 * 145.01795 * 21 12 11 36 36 H 1.09006 * 117.49388 * 214.97788 * 22 12 11 37 37 H 1.08995 * 117.50440 * 359.97251 * 22 12 11 38 38 H 1.08005 * 120.78989 * 180.02562 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3002 2.3800 0.0005 5 7 1.8934 3.5580 0.0000 6 6 3.2085 3.6735 -0.0005 7 9 3.7703 4.9021 -0.0015 8 6 4.0196 2.5506 -0.0011 9 6 5.5198 2.6935 -0.0011 10 7 5.9732 3.0968 -1.3389 11 6 7.4341 3.2456 -1.3769 12 6 7.8557 3.7931 -2.7420 13 6 7.3796 5.1876 -3.0582 14 1 6.4673 5.3328 -3.6179 15 6 8.1086 6.2779 -2.6331 16 7 9.1485 6.1074 -1.8463 17 14 7.6192 7.9974 -3.1749 18 1 6.4226 7.9186 -4.0508 19 1 7.3043 8.8218 -1.9806 20 1 8.7411 8.6186 -3.9235 21 6 7.9537 2.8001 -3.9018 22 6 9.2270 3.3764 -3.2774 23 6 3.4351 1.2951 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2216 2.3250 -0.0033 28 1 5.8126 3.4513 0.7256 29 1 5.9756 1.7398 0.2649 30 1 5.6583 2.4429 -2.0398 31 1 7.7495 3.9366 -0.5952 32 1 7.9026 2.2750 -1.2144 33 1 9.6616 6.8745 -1.5475 34 1 7.7183 1.7566 -3.6922 35 1 7.6742 3.1555 -4.8936 36 1 9.7847 4.1107 -3.8588 37 1 9.8291 2.7125 -2.6571 38 1 4.0428 0.4023 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877494849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:22 Heat of formation + Delta-G solvation = -11.864126 kcal Electronic energy + Delta-G solvation = -21540.786423 eV Core-core repulsion = 18106.455919 eV Total energy + Delta-G solvation = -3434.330503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.54337 -40.73864 -38.29860 -37.04892 -35.00638 -32.36100 -31.75384 -30.28809 -27.87584 -26.54735 -25.27476 -23.74332 -23.31876 -21.66857 -20.95089 -18.99793 -18.15793 -17.81538 -17.60517 -16.28502 -16.12338 -15.53682 -15.02918 -14.84598 -14.43905 -14.08693 -13.95505 -13.80878 -13.53800 -13.16568 -12.98248 -12.90807 -12.68527 -12.22017 -11.61354 -11.57209 -11.53393 -11.17142 -10.87718 -10.61675 -10.38784 -10.14349 -9.79139 -9.69873 -9.38212 -8.74849 -8.39275 -8.31742 -8.01927 -7.60775 -5.89777 -3.90590 0.84367 1.04887 2.86468 3.39556 3.47215 3.47738 3.53169 3.72324 4.34185 4.46910 4.54831 4.65430 4.77903 4.80925 4.87766 5.10592 5.18178 5.24192 5.40779 5.49777 5.61860 5.74426 5.90679 5.98264 6.19894 6.33767 6.44390 6.50645 6.63432 6.76276 6.87833 6.93649 7.15023 7.50180 7.56566 7.59057 7.88570 8.04084 8.09671 8.60761 9.08760 9.72898 11.20223 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.004411 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.182611 B = 6346.634858 C = 7111.464979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.059 3.941 4 C 0.048 3.952 5 N -0.484 5.484 6 C 0.302 3.698 7 F -0.094 7.094 8 C -0.108 4.108 9 C 0.101 3.899 10 N -0.661 5.661 11 C 0.108 3.892 12 C 0.053 3.947 13 C -0.468 4.468 14 H 0.059 0.941 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.287 1.287 21 C -0.216 4.216 22 C -0.157 4.157 23 C -0.078 4.078 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.332 0.668 31 H 0.079 0.921 32 H -0.003 1.003 33 H 0.256 0.744 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 -12.689 5.649 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.012 3.988 4 C -0.110 4.110 5 N -0.199 5.199 6 C 0.148 3.852 7 F -0.073 7.073 8 C -0.112 4.112 9 C -0.028 4.028 10 N -0.291 5.291 11 C -0.020 4.020 12 C 0.052 3.948 13 C -0.506 4.506 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.253 4.253 22 C -0.195 4.195 23 C -0.105 4.105 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.181 0.819 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.374 -11.303 5.862 19.202 hybrid contribution 0.402 -0.321 -0.234 0.565 sum -13.972 -11.624 5.628 19.026 Atomic orbital electron populations 1.23131 0.78043 1.04360 1.01647 1.86094 1.21569 1.25671 1.88889 1.19918 0.92972 0.85771 1.00160 1.22533 1.00196 0.85694 1.02548 1.66893 1.10798 1.28448 1.13755 1.17842 0.86968 0.81170 0.99261 1.91710 1.83167 1.39551 1.92835 1.20615 0.98222 0.91314 1.01030 1.20802 0.87210 0.99967 0.94856 1.60311 1.14316 1.52482 1.02024 1.21585 0.83863 0.95987 1.00564 1.18810 0.94883 0.93253 0.87867 1.20337 1.07973 0.88053 1.34197 0.92240 1.24913 0.95065 0.98616 0.94757 1.70009 1.18842 1.29993 1.33586 0.86617 0.78311 0.85047 0.78522 1.19772 1.21153 1.21338 1.22996 1.05554 0.96977 0.99815 1.22517 0.91187 1.01908 1.03934 1.20731 0.91564 0.97805 1.00399 0.92384 0.92293 0.87906 0.81858 0.89326 0.94413 0.85140 0.90253 0.98511 0.93421 0.92240 0.90530 0.90039 0.92155 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.06 10.51 -19.63 -0.21 -3.26 16 3 C 0.06 0.68 6.71 -39.10 -0.26 0.42 16 4 C 0.05 0.58 10.22 -17.38 -0.18 0.40 16 5 N -0.48 -7.55 10.37 -13.48 -0.14 -7.69 16 6 C 0.30 5.10 8.36 -17.37 -0.15 4.95 16 7 F -0.09 -1.84 16.78 2.25 0.04 -1.80 16 8 C -0.11 -1.59 5.41 -104.43 -0.57 -2.16 16 9 C 0.10 1.60 5.51 -4.98 -0.03 1.58 16 10 N -0.66 -12.78 6.37 -115.06 -0.73 -13.51 16 11 C 0.11 2.37 5.51 -3.82 -0.02 2.34 16 12 C 0.05 1.28 1.55 -155.66 -0.24 1.04 16 13 C -0.47 -12.91 8.74 -34.44 -0.30 -13.21 16 14 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 15 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 16 N -0.89 -25.36 12.92 55.43 0.72 -24.65 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.22 -4.68 9.96 -26.70 -0.27 -4.94 16 22 C -0.16 -3.69 9.41 -26.69 -0.25 -3.94 16 23 C -0.08 -0.96 9.76 -39.16 -0.38 -1.34 16 24 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 25 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.16 1.39 6.31 -52.49 -0.33 1.06 16 28 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 29 H 0.04 0.52 8.00 -51.93 -0.42 0.10 16 30 H 0.33 6.02 8.78 -39.29 -0.34 5.68 16 31 H 0.08 1.95 8.13 -51.93 -0.42 1.52 16 32 H 0.00 -0.06 8.09 -51.93 -0.42 -0.48 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.15 1.52 8.05 -52.48 -0.42 1.10 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.99 331.78 -7.32 -38.32 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.23 Total: 2.56 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.74 Total: -11.93 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.16 Total: -45.85 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.21 Total: -3.26 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.99 -7.32 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877494849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.453 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds