Wall clock time and date at job start Tue Mar 31 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35966 * 116.99827 * 2 1 4 4 C 1.38637 * 120.44255 * 0.02562 * 3 2 1 5 5 N 1.31894 * 120.71222 * 180.02562 * 4 3 2 6 6 C 1.32020 * 121.74976 * 359.97438 * 5 4 3 7 7 F 1.35093 * 119.59190 * 179.97438 * 6 5 4 8 8 C 1.38519 * 120.82026 * 0.02562 * 6 5 4 9 9 C 1.50694 * 120.39989 * 180.02562 * 8 6 5 10 10 N 1.46904 * 109.46992 * 284.97238 * 9 8 6 11 11 C 1.46898 * 110.99816 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47279 * 185.35337 * 11 10 9 13 13 C 1.50702 * 115.54817 * 65.04835 * 12 11 10 14 14 H 1.08006 * 119.99651 * 265.44533 * 13 12 11 15 15 C 1.37874 * 119.99977 * 85.44749 * 13 12 11 16 16 N 1.31506 * 120.00203 * 353.59566 * 15 13 12 17 17 Si 1.86807 * 119.99646 * 173.59344 * 15 13 12 18 18 H 1.48500 * 109.47269 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46962 * 119.99997 * 17 15 13 20 20 H 1.48493 * 109.47208 * 239.99995 * 17 15 13 21 21 C 1.52993 * 117.49536 * 279.38121 * 12 11 10 22 22 C 1.52996 * 117.49748 * 210.72029 * 12 11 10 23 23 C 1.38495 * 119.19308 * 359.97438 * 8 6 5 24 24 H 1.09004 * 109.47067 * 299.99784 * 1 2 3 25 25 H 1.09003 * 109.46980 * 59.99641 * 1 2 3 26 26 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.64230 * 359.74249 * 4 3 2 28 28 H 1.08994 * 109.47218 * 44.97460 * 9 8 6 29 29 H 1.09004 * 109.46840 * 164.97470 * 9 8 6 30 30 H 1.00896 * 111.00194 * 303.95634 * 10 9 8 31 31 H 1.09000 * 109.47194 * 305.35017 * 11 10 9 32 32 H 1.08993 * 109.47620 * 65.34989 * 11 10 9 33 33 H 0.97005 * 120.00313 * 179.97438 * 16 15 13 34 34 H 1.09003 * 117.50168 * 359.97438 * 21 12 11 35 35 H 1.09001 * 117.49816 * 145.01795 * 21 12 11 36 36 H 1.09006 * 117.49388 * 214.97788 * 22 12 11 37 37 H 1.08995 * 117.50440 * 359.97251 * 22 12 11 38 38 H 1.08005 * 120.78989 * 180.02562 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3002 2.3800 0.0005 5 7 1.8934 3.5580 0.0000 6 6 3.2085 3.6735 -0.0005 7 9 3.7703 4.9021 -0.0015 8 6 4.0196 2.5506 -0.0011 9 6 5.5198 2.6935 -0.0011 10 7 5.9732 3.0968 -1.3389 11 6 7.4341 3.2456 -1.3769 12 6 7.8557 3.7931 -2.7420 13 6 7.3796 5.1876 -3.0582 14 1 6.4673 5.3328 -3.6179 15 6 8.1086 6.2779 -2.6331 16 7 9.1485 6.1074 -1.8463 17 14 7.6192 7.9974 -3.1749 18 1 6.4226 7.9186 -4.0508 19 1 7.3043 8.8218 -1.9806 20 1 8.7411 8.6186 -3.9235 21 6 7.9537 2.8001 -3.9018 22 6 9.2270 3.3764 -3.2774 23 6 3.4351 1.2951 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2216 2.3250 -0.0033 28 1 5.8126 3.4513 0.7256 29 1 5.9756 1.7398 0.2649 30 1 5.6583 2.4429 -2.0398 31 1 7.7495 3.9366 -0.5952 32 1 7.9026 2.2750 -1.2144 33 1 9.6616 6.8745 -1.5475 34 1 7.7183 1.7566 -3.6922 35 1 7.6742 3.1555 -4.8936 36 1 9.7847 4.1107 -3.8588 37 1 9.8291 2.7125 -2.6571 38 1 4.0428 0.4023 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877494849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:21 Heat of formation + Delta-G solvation = -32.866903 kcal Electronic energy + Delta-G solvation = -21541.697171 eV Core-core repulsion = 18106.455919 eV Total energy + Delta-G solvation = -3435.241252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86677 -41.68952 -39.22989 -38.72167 -36.43367 -33.93189 -33.48073 -31.31896 -28.64096 -27.92450 -27.13900 -24.99657 -24.59765 -22.96255 -22.56558 -20.89173 -19.14212 -18.86773 -18.68263 -17.96139 -17.24404 -16.73299 -16.50655 -16.30267 -15.69840 -15.47738 -15.38167 -15.27971 -14.91049 -14.34194 -14.30054 -14.03185 -13.95220 -13.42684 -13.18724 -12.89501 -12.85462 -12.67686 -12.56485 -12.34109 -12.32524 -11.98886 -11.36842 -10.79162 -10.74405 -10.69597 -10.34996 -9.89509 -9.36803 -9.08275 -8.03173 -6.07822 -0.18303 0.02327 1.39406 1.43231 1.52952 2.11856 2.42816 2.48408 2.66161 3.27029 3.30851 3.45537 3.53634 3.66528 3.72586 4.07120 4.15502 4.40531 4.41798 4.44394 4.55427 4.63089 4.66593 4.75111 4.78435 4.81952 4.83068 4.94113 5.02154 5.09511 5.31619 5.36682 5.67354 5.76975 5.90048 6.14389 6.29611 6.50763 6.54371 6.71268 6.95018 7.57200 9.05889 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.004411 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.182611 B = 6346.634858 C = 7111.464979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.314 6.314 3 C 0.075 3.925 4 C 0.051 3.949 5 N -0.507 5.507 6 C 0.263 3.737 7 F -0.124 7.124 8 C -0.110 4.110 9 C 0.107 3.893 10 N -0.678 5.678 11 C 0.125 3.875 12 C 0.023 3.977 13 C -0.478 4.478 14 H 0.042 0.958 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.280 1.280 21 C -0.187 4.187 22 C -0.163 4.163 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.199 0.801 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.340 0.660 31 H 0.043 0.957 32 H 0.019 0.981 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 -15.253 5.596 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.027 3.973 4 C -0.107 4.107 5 N -0.221 5.221 6 C 0.109 3.891 7 F -0.104 7.104 8 C -0.114 4.114 9 C -0.022 4.022 10 N -0.309 5.309 11 C -0.004 4.004 12 C 0.022 3.978 13 C -0.516 4.516 14 H 0.060 0.940 15 C -0.174 4.174 16 N -0.549 5.549 17 Si 0.764 3.236 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.206 1.206 21 C -0.224 4.224 22 C -0.202 4.202 23 C -0.100 4.100 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.216 0.784 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.133 -13.879 5.802 22.059 hybrid contribution 0.753 0.323 -0.217 0.847 sum -15.381 -13.556 5.586 21.249 Atomic orbital electron populations 1.23527 0.75639 1.06433 1.02851 1.86115 1.23982 1.24379 1.88168 1.19929 0.92841 0.86406 0.98130 1.23128 1.01784 0.84843 1.00988 1.66868 1.10402 1.30404 1.14468 1.18131 0.87945 0.80748 1.02253 1.91619 1.83765 1.41481 1.93506 1.20435 0.97178 0.91740 1.02084 1.20722 0.88295 1.00631 0.92582 1.60123 1.12781 1.53852 1.04136 1.21197 0.85611 0.95870 0.97749 1.18914 0.95800 0.92860 0.90195 1.20542 1.07210 0.90261 1.33565 0.94008 1.25495 0.95362 1.01496 0.95090 1.70089 1.19669 1.30575 1.34524 0.85828 0.78042 0.81708 0.77985 1.19845 1.21334 1.20566 1.22977 1.02988 0.97998 0.98456 1.22434 0.91362 1.02011 1.04350 1.20949 0.92398 0.97416 0.99262 0.90968 0.91245 0.85585 0.78428 0.91286 0.91413 0.84222 0.93864 0.96325 0.93552 0.88885 0.90934 0.92624 0.90669 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.31 -4.97 10.51 -93.17 -0.98 -5.95 16 3 C 0.08 1.51 6.71 22.58 0.15 1.66 16 4 C 0.05 1.10 10.22 84.78 0.87 1.96 16 5 N -0.51 -15.56 10.37 -196.58 -2.04 -17.59 16 6 C 0.26 9.01 8.36 84.73 0.71 9.72 16 7 F -0.12 -5.17 16.78 44.97 0.75 -4.41 16 8 C -0.11 -3.18 5.41 -19.74 -0.11 -3.29 16 9 C 0.11 3.34 5.51 85.55 0.47 3.81 16 10 N -0.68 -25.98 6.37 -517.94 -3.30 -29.28 16 11 C 0.12 5.42 5.51 86.31 0.48 5.90 16 12 C 0.02 1.12 1.55 -52.93 -0.08 1.04 16 13 C -0.48 -26.88 8.74 25.60 0.22 -26.66 16 14 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 15 C 0.02 1.40 5.39 84.66 0.46 1.85 16 16 N -0.91 -53.24 12.92 21.44 0.28 -52.96 16 17 Si 0.94 46.12 29.54 68.60 2.03 48.15 16 18 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 C -0.19 -7.77 9.96 30.62 0.30 -7.47 16 22 C -0.16 -7.59 9.41 30.62 0.29 -7.31 16 23 C -0.07 -1.62 9.76 22.55 0.22 -1.40 16 24 H 0.07 0.36 7.68 -2.39 -0.02 0.34 16 25 H 0.07 0.40 7.68 -2.39 -0.02 0.38 16 26 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.20 2.66 6.31 -2.91 -0.02 2.64 16 28 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 29 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 30 H 0.34 11.87 8.78 -89.70 -0.79 11.09 16 31 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.02 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 34 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.18 2.89 8.05 -2.91 -0.02 2.86 16 Total: -1.00 -68.94 331.78 2.12 -66.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.29 Total: 14.23 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.09 Total: -19.00 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.06 Total: -99.83 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.98 Total: -5.95 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.75 Total: -4.41 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -68.94 2.12 -66.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877494849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.954 kcal (2) G-P(sol) polarization free energy of solvation -68.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds