Wall clock time and date at job start Tue Mar 31 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99986 * 2 1 4 4 N 1.46895 * 109.46980 * 124.99640 * 3 2 1 5 5 C 1.46899 * 111.00018 * 288.69511 * 4 3 2 6 6 C 1.50702 * 109.46841 * 160.25261 * 5 4 3 7 7 H 1.07992 * 120.00391 * 1.82221 * 6 5 4 8 8 C 1.37880 * 119.99949 * 181.82001 * 6 5 4 9 9 N 1.31516 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46971 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47005 * 119.99543 * 10 8 6 13 13 H 1.48490 * 109.47182 * 240.00131 * 10 8 6 14 14 C 1.46906 * 110.99859 * 164.74694 * 4 3 2 15 15 C 1.50705 * 109.46740 * 293.95375 * 14 4 3 16 16 C 1.38491 * 120.39998 * 105.00217 * 15 14 4 17 17 C 1.39138 * 118.40535 * 180.02562 * 16 15 14 18 18 O 1.35955 * 120.44465 * 180.02562 * 17 16 15 19 19 C 1.42895 * 117.00212 * 179.97438 * 18 17 16 20 20 C 1.38631 * 119.11114 * 359.97438 * 17 16 15 21 21 N 1.31892 * 120.71946 * 0.02562 * 20 17 16 22 22 C 1.32028 * 121.74224 * 0.02562 * 21 20 17 23 23 F 1.35098 * 119.58685 * 180.02562 * 22 21 20 24 24 H 1.08000 * 119.99694 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99421 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99694 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46906 * 4.99600 * 3 2 1 28 28 H 1.08993 * 109.46991 * 244.99688 * 3 2 1 29 29 H 1.08993 * 109.47743 * 280.25394 * 5 4 3 30 30 H 1.09003 * 109.47205 * 40.25750 * 5 4 3 31 31 H 0.96994 * 120.00190 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47242 * 173.95192 * 14 4 3 33 33 H 1.09004 * 109.46959 * 53.95318 * 14 4 3 34 34 H 1.08006 * 120.79771 * 0.03975 * 16 15 14 35 35 H 1.09002 * 109.47130 * 60.00188 * 19 18 17 36 36 H 1.09005 * 109.47647 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47462 * 299.99755 * 19 18 17 38 38 H 1.08000 * 119.64143 * 179.72605 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2745 1.4728 2.4062 6 6 3.1595 1.0201 3.5389 7 1 4.1683 0.6913 3.3377 8 6 2.6813 1.0258 4.8320 9 7 1.4526 1.4257 5.0770 10 14 3.7785 0.4654 6.2362 11 1 5.1047 0.0672 5.6994 12 1 3.9498 1.5779 7.2048 13 1 3.1533 -0.6948 6.9202 14 6 3.9912 2.4007 0.9729 15 6 4.8733 2.0911 -0.2092 16 6 4.7157 2.7795 -1.4005 17 6 5.5522 2.4598 -2.4654 18 8 5.4339 3.1098 -3.6536 19 6 6.3308 2.7232 -4.6967 20 6 6.5086 1.4702 -2.2982 21 7 6.6284 0.8365 -1.1477 22 6 5.8507 1.1141 -0.1175 23 9 6.0117 0.4381 1.0410 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 2.0000 2.5171 2.5546 30 1 1.3733 0.8601 2.3822 31 1 1.1163 1.4301 5.9868 32 1 4.6012 2.4685 1.8736 33 1 3.4813 3.3498 0.8072 34 1 3.9616 3.5463 -1.5006 35 1 6.1886 1.6670 -4.9253 36 1 6.1303 3.3184 -5.5876 37 1 7.3582 2.8898 -4.3728 38 1 7.1595 1.2121 -3.1205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877545241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:24 Heat of formation + Delta-G solvation = -12.259359 kcal Electronic energy + Delta-G solvation = -21906.499649 eV Core-core repulsion = 18472.152007 eV Total energy + Delta-G solvation = -3434.347642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.43658 -40.67617 -38.31521 -37.08316 -33.56253 -32.95891 -31.80756 -30.23482 -27.83601 -27.27600 -26.32421 -23.88766 -23.53656 -22.00112 -20.52379 -19.20842 -18.06867 -17.64027 -17.45826 -16.40104 -16.16665 -15.51585 -15.17293 -14.78671 -14.65938 -14.33440 -13.97333 -13.85415 -13.45541 -13.16342 -12.90553 -12.80936 -12.65712 -12.20333 -12.03583 -11.53687 -11.48789 -11.26260 -11.07106 -10.63885 -10.60471 -10.52122 -9.99742 -9.64136 -9.52897 -9.19590 -8.80718 -8.39250 -8.27534 -7.36615 -5.98648 -3.99309 0.96080 1.13868 2.78714 2.94082 3.35015 3.42735 3.49618 3.57997 3.81435 4.43042 4.47528 4.59541 4.75345 4.85644 4.88931 4.96205 5.17032 5.28946 5.33459 5.37487 5.55217 5.67033 5.76066 5.87662 5.94434 6.07895 6.18679 6.30429 6.41892 6.57225 7.01561 7.08764 7.18895 7.20640 7.33356 7.66295 7.85337 8.06303 8.14921 8.52462 9.09781 9.65037 11.11932 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.005053 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.149917 B = 5540.081457 C = 6438.377698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C 0.075 3.925 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.503 4.503 7 H 0.067 0.933 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.101 3.899 15 C -0.098 4.098 16 C -0.082 4.082 17 C 0.060 3.940 18 O -0.310 6.310 19 C 0.024 3.976 20 C 0.044 3.956 21 N -0.485 5.485 22 C 0.299 3.701 23 F -0.094 7.094 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.031 0.969 28 H 0.066 0.934 29 H -0.007 1.007 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.149 0.851 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 3.277 -18.081 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.140 4.140 3 C -0.053 4.053 4 N -0.249 5.249 5 C 0.069 3.931 6 C -0.542 4.542 7 H 0.085 0.915 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.027 4.027 15 C -0.102 4.102 16 C -0.109 4.109 17 C 0.012 3.988 18 O -0.222 6.222 19 C -0.071 4.071 20 C -0.114 4.114 21 N -0.200 5.200 22 C 0.145 3.855 23 F -0.073 7.073 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.010 0.990 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.166 0.834 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.168 2.351 -17.828 19.358 hybrid contribution -0.327 0.718 0.850 1.160 sum 6.841 3.069 -16.978 18.559 Atomic orbital electron populations 1.23686 0.95925 1.01202 1.03341 1.22813 0.95355 0.98632 0.97221 1.21245 0.94492 0.94530 0.95000 1.62168 1.15338 1.43942 1.03473 1.19803 0.94131 0.95558 0.83607 1.21236 0.99858 1.42621 0.90500 0.91500 1.24967 0.95111 0.95603 0.98858 1.69967 1.15478 1.48159 1.20371 0.86488 0.80980 0.78233 0.82076 1.19471 1.21197 1.21097 1.20929 0.93931 0.93251 0.94580 1.20768 0.96974 0.95506 0.96988 1.20762 0.99437 1.01091 0.89615 1.19917 0.97040 0.94734 0.87094 1.86089 1.57446 1.59471 1.19244 1.23112 0.93230 1.01432 0.89357 1.22479 0.98889 0.94971 0.95083 1.66877 1.25934 1.27488 0.99684 1.17829 0.93315 0.91546 0.82844 1.91701 1.94381 1.78136 1.43095 0.89120 0.88894 0.87374 0.95110 0.91618 0.98968 0.94275 0.93074 0.87866 0.94066 0.83360 0.92382 0.87982 0.92428 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 14.32 29.01 0.42 -2.89 16 2 C -0.12 -2.16 8.72 -36.03 -0.31 -2.48 16 3 C 0.08 1.35 5.28 -4.98 -0.03 1.33 16 4 N -0.52 -11.04 4.37 -238.96 -1.04 -12.09 16 5 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 6 C -0.50 -14.06 8.58 -34.44 -0.30 -14.36 16 7 H 0.07 1.89 7.74 -52.49 -0.41 1.48 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.10 1.88 4.62 -4.97 -0.02 1.85 16 15 C -0.10 -1.60 4.49 -104.43 -0.47 -2.06 16 16 C -0.08 -1.11 8.80 -39.15 -0.34 -1.46 16 17 C 0.06 0.73 6.71 -39.10 -0.26 0.47 16 18 O -0.31 -3.26 10.51 -19.60 -0.21 -3.47 16 19 C 0.02 0.15 9.82 101.05 0.99 1.14 16 20 C 0.04 0.55 10.22 -17.38 -0.18 0.37 16 21 N -0.49 -7.82 10.37 -13.49 -0.14 -7.96 16 22 C 0.30 5.30 8.36 -17.37 -0.15 5.16 16 23 F -0.09 -1.91 16.78 2.25 0.04 -1.88 16 24 H 0.09 1.41 7.84 -52.49 -0.41 1.00 16 25 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.03 0.55 7.71 -51.92 -0.40 0.15 16 28 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 29 H -0.01 -0.20 8.00 -51.93 -0.42 -0.62 16 30 H 0.04 1.08 7.09 -51.93 -0.37 0.71 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.10 2.10 7.33 -51.93 -0.38 1.72 16 33 H 0.04 0.70 7.98 -51.93 -0.41 0.29 16 34 H 0.15 1.74 8.05 -52.48 -0.42 1.32 16 35 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 38 H 0.16 1.46 6.31 -52.49 -0.33 1.12 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -31.56 328.26 -6.53 -38.09 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.07 Total: -2.07 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.77 Total: -6.54 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.45 Total: -45.98 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.21 Total: -3.47 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.56 -6.53 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877545241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.832 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds