Wall clock time and date at job start Tue Mar 31 2020 01:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99986 * 2 1 4 4 N 1.46895 * 109.46980 * 124.99640 * 3 2 1 5 5 C 1.46899 * 111.00018 * 288.69511 * 4 3 2 6 6 C 1.50702 * 109.46841 * 160.25261 * 5 4 3 7 7 H 1.07992 * 120.00391 * 1.82221 * 6 5 4 8 8 C 1.37880 * 119.99949 * 181.82001 * 6 5 4 9 9 N 1.31516 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46971 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47005 * 119.99543 * 10 8 6 13 13 H 1.48490 * 109.47182 * 240.00131 * 10 8 6 14 14 C 1.46906 * 110.99859 * 164.74694 * 4 3 2 15 15 C 1.50705 * 109.46740 * 293.95375 * 14 4 3 16 16 C 1.38491 * 120.39998 * 105.00217 * 15 14 4 17 17 C 1.39138 * 118.40535 * 180.02562 * 16 15 14 18 18 O 1.35955 * 120.44465 * 180.02562 * 17 16 15 19 19 C 1.42895 * 117.00212 * 179.97438 * 18 17 16 20 20 C 1.38631 * 119.11114 * 359.97438 * 17 16 15 21 21 N 1.31892 * 120.71946 * 0.02562 * 20 17 16 22 22 C 1.32028 * 121.74224 * 0.02562 * 21 20 17 23 23 F 1.35098 * 119.58685 * 180.02562 * 22 21 20 24 24 H 1.08000 * 119.99694 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99421 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99694 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46906 * 4.99600 * 3 2 1 28 28 H 1.08993 * 109.46991 * 244.99688 * 3 2 1 29 29 H 1.08993 * 109.47743 * 280.25394 * 5 4 3 30 30 H 1.09003 * 109.47205 * 40.25750 * 5 4 3 31 31 H 0.96994 * 120.00190 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47242 * 173.95192 * 14 4 3 33 33 H 1.09004 * 109.46959 * 53.95318 * 14 4 3 34 34 H 1.08006 * 120.79771 * 0.03975 * 16 15 14 35 35 H 1.09002 * 109.47130 * 60.00188 * 19 18 17 36 36 H 1.09005 * 109.47647 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47462 * 299.99755 * 19 18 17 38 38 H 1.08000 * 119.64143 * 179.72605 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2745 1.4728 2.4062 6 6 3.1595 1.0201 3.5389 7 1 4.1683 0.6913 3.3377 8 6 2.6813 1.0258 4.8320 9 7 1.4526 1.4257 5.0770 10 14 3.7785 0.4654 6.2362 11 1 5.1047 0.0672 5.6994 12 1 3.9498 1.5779 7.2048 13 1 3.1533 -0.6948 6.9202 14 6 3.9912 2.4007 0.9729 15 6 4.8733 2.0911 -0.2092 16 6 4.7157 2.7795 -1.4005 17 6 5.5522 2.4598 -2.4654 18 8 5.4339 3.1098 -3.6536 19 6 6.3308 2.7232 -4.6967 20 6 6.5086 1.4702 -2.2982 21 7 6.6284 0.8365 -1.1477 22 6 5.8507 1.1141 -0.1175 23 9 6.0117 0.4381 1.0410 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 2.0000 2.5171 2.5546 30 1 1.3733 0.8601 2.3822 31 1 1.1163 1.4301 5.9868 32 1 4.6012 2.4685 1.8736 33 1 3.4813 3.3498 0.8072 34 1 3.9616 3.5463 -1.5006 35 1 6.1886 1.6670 -4.9253 36 1 6.1303 3.3184 -5.5876 37 1 7.3582 2.8898 -4.3728 38 1 7.1595 1.2121 -3.1205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877545241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:23 Heat of formation + Delta-G solvation = -33.568877 kcal Electronic energy + Delta-G solvation = -21907.423699 eV Core-core repulsion = 18472.152007 eV Total energy + Delta-G solvation = -3435.271692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.83462 -41.72332 -39.39322 -38.51284 -34.96562 -34.83188 -33.30150 -31.37947 -29.28748 -28.51071 -27.53667 -25.63459 -24.69998 -23.42799 -22.05422 -20.62371 -19.10939 -18.81081 -18.61621 -18.38117 -17.33618 -16.85751 -16.48171 -16.22021 -16.03596 -15.69156 -15.45041 -15.26085 -14.79734 -14.33663 -14.14823 -14.09324 -13.97769 -13.91744 -13.31755 -12.88110 -12.86295 -12.68016 -12.54235 -12.42638 -12.30856 -12.06101 -11.82869 -11.32827 -10.78689 -10.72645 -10.54924 -10.17330 -9.35281 -9.05969 -8.16773 -6.24795 -0.16453 0.01836 1.39853 1.40987 1.43002 1.55510 2.12572 2.41660 2.45491 2.66438 3.15184 3.35324 3.46680 3.54758 3.66567 4.04620 4.09665 4.21875 4.27693 4.42945 4.45733 4.54075 4.59559 4.71024 4.75073 4.80681 4.82852 4.91014 5.05865 5.18477 5.29614 5.38984 5.68342 5.74102 5.86878 6.12086 6.15694 6.31713 6.54692 6.60317 6.90769 7.44041 8.93562 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.005053 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.149917 B = 5540.081457 C = 6438.377698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.148 4.148 3 C 0.080 3.920 4 N -0.536 5.536 5 C 0.212 3.788 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.270 1.270 12 H -0.276 1.276 13 H -0.279 1.279 14 C 0.107 3.893 15 C -0.104 4.104 16 C -0.080 4.080 17 C 0.078 3.922 18 O -0.315 6.315 19 C 0.009 3.991 20 C 0.052 3.948 21 N -0.501 5.501 22 C 0.265 3.735 23 F -0.123 7.123 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.033 0.967 28 H 0.085 0.915 29 H -0.030 1.030 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.168 0.832 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.301 3.673 -20.396 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.167 4.167 3 C -0.048 4.048 4 N -0.260 5.260 5 C 0.087 3.913 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.202 1.202 13 H -0.205 1.205 14 C -0.022 4.022 15 C -0.108 4.108 16 C -0.107 4.107 17 C 0.030 3.970 18 O -0.227 6.227 19 C -0.085 4.085 20 C -0.107 4.107 21 N -0.216 5.216 22 C 0.112 3.888 23 F -0.102 7.102 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.051 0.949 28 H 0.103 0.897 29 H -0.013 1.013 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.185 0.815 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.930 2.752 -20.166 21.843 hybrid contribution -0.535 0.654 1.309 1.558 sum 7.394 3.405 -18.857 20.539 Atomic orbital electron populations 1.23911 0.95466 1.02414 1.00855 1.22837 0.96065 0.98268 0.99527 1.21267 0.94223 0.94833 0.94432 1.62012 1.15856 1.45395 1.02707 1.19374 0.93177 0.93285 0.85493 1.21484 0.99726 1.42481 0.91759 0.92528 1.25760 0.96409 0.95630 1.01327 1.70068 1.16966 1.49123 1.21096 0.85488 0.79078 0.78044 0.78976 1.19400 1.20198 1.20463 1.20770 0.93368 0.93187 0.94832 1.20424 0.96785 0.96426 0.97168 1.20899 1.00012 1.00867 0.88905 1.19872 0.95723 0.93807 0.87585 1.86113 1.58517 1.59098 1.18981 1.23535 0.93307 1.02867 0.88754 1.23143 0.98894 0.93948 0.94673 1.66893 1.25995 1.28384 1.00306 1.18021 0.95115 0.92844 0.82859 1.91615 1.94766 1.78976 1.44829 0.88429 0.87120 0.88085 0.94885 0.89677 1.01272 0.96687 0.92796 0.90738 0.92627 0.81453 0.91076 0.85624 0.90940 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.96 14.32 67.77 0.97 -4.99 16 2 C -0.15 -5.28 8.72 25.64 0.22 -5.05 16 3 C 0.08 2.87 5.28 85.56 0.45 3.32 16 4 N -0.54 -23.23 4.37 -909.93 -3.97 -27.21 16 5 C 0.21 11.27 4.59 85.56 0.39 11.66 16 6 C -0.52 -29.86 8.58 25.60 0.22 -29.64 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 10 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.11 4.07 4.62 85.56 0.40 4.46 16 15 C -0.10 -3.38 4.49 -19.74 -0.09 -3.47 16 16 C -0.08 -2.02 8.80 22.55 0.20 -1.82 16 17 C 0.08 1.70 6.71 22.58 0.15 1.85 16 18 O -0.31 -5.39 10.51 -93.04 -0.98 -6.36 16 19 C 0.01 0.07 9.82 113.37 1.11 1.19 16 20 C 0.05 1.15 10.22 84.78 0.87 2.02 16 21 N -0.50 -15.69 10.37 -196.58 -2.04 -17.73 16 22 C 0.26 9.54 8.36 84.73 0.71 10.25 16 23 F -0.12 -5.25 16.78 44.97 0.75 -4.50 16 24 H 0.10 2.93 7.84 -2.91 -0.02 2.91 16 25 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.10 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.03 1.17 7.71 -2.38 -0.02 1.15 16 28 H 0.09 2.70 6.17 -2.39 -0.01 2.68 16 29 H -0.03 -1.71 8.00 -2.39 -0.02 -1.73 16 30 H 0.02 0.86 7.09 -2.39 -0.02 0.84 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.07 3.23 7.33 -2.39 -0.02 3.21 16 33 H 0.06 1.91 7.98 -2.38 -0.02 1.90 16 34 H 0.17 3.50 8.05 -2.91 -0.02 3.48 16 35 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 36 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.07 0.41 7.68 -2.39 -0.02 0.39 16 38 H 0.20 2.73 6.31 -2.91 -0.02 2.71 16 Total: -1.00 -70.27 328.26 3.20 -67.08 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.05 Total: 6.28 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 6.06 Total: -9.36 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -5.73 Total: -100.94 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.98 Total: -6.36 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.27 3.20 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877545241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.508 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds